Wall clock time and date at job start Wed Apr 1 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47047 * 240.00089 * 3 2 1 5 5 H 1.48502 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47369 * 119.99526 * 3 2 1 7 7 C 1.39891 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99715 * 197.93309 * 7 2 1 9 9 C 1.41214 * 120.00142 * 17.93416 * 7 2 1 10 10 C 1.40834 * 120.17649 * 24.54682 * 9 7 2 11 11 C 1.36440 * 119.80487 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.19216 * 0.02562 * 11 10 9 13 13 O 1.35665 * 119.82054 * 179.97438 * 12 11 10 14 14 C 1.42905 * 117.00059 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47095 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47089 * 54.99964 * 15 14 13 17 17 O 1.42895 * 109.47413 * 294.99637 * 15 14 13 18 18 C 1.53002 * 109.46915 * 174.99727 * 15 14 13 19 19 N 1.46907 * 109.47170 * 184.99784 * 18 15 14 20 20 C 1.46898 * 111.00117 * 180.02562 * 19 18 15 21 21 C 1.50699 * 109.47099 * 180.02562 * 20 19 18 22 22 C 1.38419 * 120.43983 * 105.00041 * 21 20 19 23 23 C 1.38791 * 118.48217 * 180.25243 * 22 21 20 24 24 C 1.38096 * 119.28510 * 359.45526 * 23 22 21 25 25 N 1.31936 * 120.83254 * 0.56186 * 24 23 22 26 26 C 1.32273 * 121.64587 * 359.71185 * 25 24 23 27 27 O 1.35683 * 119.68020 * 179.97438 * 26 25 24 28 28 C 1.39316 * 120.35827 * 0.25350 * 12 11 10 29 29 C 1.36439 * 120.18761 * 359.48341 * 28 12 11 30 30 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.09604 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.90259 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47520 * 59.99958 * 14 13 12 34 34 H 1.08998 * 109.47115 * 300.00261 * 14 13 12 35 35 H 0.96702 * 114.00109 * 300.00687 * 17 15 14 36 36 H 1.09001 * 109.46810 * 65.00260 * 18 15 14 37 37 H 1.09000 * 109.47524 * 305.00151 * 18 15 14 38 38 H 1.00900 * 110.99548 * 56.04516 * 19 18 15 39 39 H 1.08998 * 109.46771 * 59.99782 * 20 19 18 40 40 H 1.09000 * 109.47203 * 300.00637 * 20 19 18 41 41 H 1.07999 * 120.76294 * 359.97438 * 22 21 20 42 42 H 1.07999 * 120.35414 * 179.71990 * 23 22 21 43 43 H 1.08002 * 119.58202 * 180.29569 * 24 23 22 44 44 H 0.96704 * 113.99693 * 270.01838 * 27 26 25 45 45 H 1.08002 * 119.90421 * 179.72309 * 28 12 11 46 46 H 1.08004 * 120.09038 * 180.25881 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0489 -1.2340 0.2885 9 6 1.3537 -2.4049 -0.3755 10 6 0.2247 -2.3585 -1.2160 11 6 -0.4022 -3.5162 -1.5742 12 6 0.0711 -4.7416 -1.1105 13 8 -0.5584 -5.8881 -1.4709 14 6 -0.0225 -7.1105 -0.9605 15 6 -0.8577 -8.2862 -1.4715 16 1 -0.9040 -8.2530 -2.5600 17 8 -2.1795 -8.2001 -0.9355 18 6 -0.2123 -9.6008 -1.0284 19 7 -0.9452 -10.7293 -1.6182 20 6 -0.3528 -12.0110 -1.2132 21 6 -1.1290 -13.1424 -1.8365 22 6 -0.6075 -13.8425 -2.9107 23 6 -1.3593 -14.8735 -3.4567 24 6 -2.5906 -15.1751 -2.9088 25 7 -3.0612 -14.4895 -1.8845 26 6 -2.3768 -13.4968 -1.3406 27 8 -2.8992 -12.8180 -0.2883 28 6 1.1839 -4.7957 -0.2740 29 6 1.8255 -3.6478 0.0892 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1438 -1.4093 -1.5760 32 1 -1.2685 -3.4824 -2.2183 33 1 -0.0489 -7.0920 0.1290 34 1 1.0081 -7.2240 -1.2969 35 1 -2.2145 -8.2237 0.0306 36 1 -0.2463 -9.6739 0.0586 37 1 0.8250 -9.6271 -1.3622 38 1 -0.9835 -10.6497 -2.6233 39 1 -0.3880 -12.1005 -0.1274 40 1 0.6837 -12.0542 -1.5478 41 1 0.3603 -13.5893 -3.3176 42 1 -0.9836 -15.4366 -4.2981 43 1 -3.1775 -15.9795 -3.3268 44 1 -3.4335 -12.0523 -0.5404 45 1 1.5419 -5.7494 0.0847 46 1 2.6906 -3.6919 0.7344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600757915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:55 Heat of formation + Delta-G solvation = -96.924007 kcal Electronic energy + Delta-G solvation = -27960.317021 eV Core-core repulsion = 23814.171596 eV Total energy + Delta-G solvation = -4146.145425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45532 -40.63914 -39.05507 -37.91342 -37.79187 -36.50808 -35.17490 -33.66053 -32.10701 -31.63179 -31.01613 -30.46048 -27.59451 -26.55557 -25.05337 -24.31512 -23.22176 -22.83458 -22.44944 -22.11300 -19.64322 -19.25073 -18.75626 -18.09026 -17.65402 -17.32811 -17.11603 -17.00168 -16.59630 -16.01030 -15.87672 -15.73293 -15.60882 -15.36957 -14.82060 -14.80088 -14.35933 -14.09889 -14.05745 -13.98070 -13.91328 -13.65804 -13.43837 -13.14288 -12.81749 -12.78377 -12.69398 -12.62510 -12.38705 -12.34790 -11.90672 -11.70630 -11.58498 -11.21679 -10.97042 -10.86737 -10.78766 -10.36883 -9.77930 -9.56116 -9.40013 -8.92226 -8.59288 -6.22635 0.03359 0.26486 0.95692 1.02833 1.39940 1.50881 1.54940 2.22855 2.37537 2.60425 2.73085 2.93767 3.29196 3.54740 3.69750 3.71299 3.85095 3.95440 4.01053 4.05268 4.06891 4.13519 4.29365 4.35899 4.38939 4.47634 4.50257 4.54815 4.65431 4.69425 4.86097 4.87078 5.04466 5.08178 5.14365 5.21106 5.22102 5.28421 5.58814 5.62726 5.64584 5.88490 5.90470 6.05799 6.26617 6.32660 6.56821 6.65438 6.80822 6.90145 6.95212 7.00962 7.10761 8.37098 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.039602 B = 0.001484 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.859358 B =18862.307059 C =19071.838897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.001 3.999 13 O -0.331 6.331 14 C 0.028 3.972 15 C 0.125 3.875 16 H 0.096 0.904 17 O -0.561 6.561 18 C 0.044 3.956 19 N -0.680 5.680 20 C 0.114 3.886 21 C -0.159 4.159 22 C -0.057 4.057 23 C -0.178 4.178 24 C 0.109 3.891 25 N -0.545 5.545 26 C 0.311 3.689 27 O -0.493 6.493 28 C -0.165 4.165 29 C -0.207 4.207 30 H 0.287 0.713 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.384 0.616 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.345 0.655 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.181 0.819 44 H 0.414 0.586 45 H 0.130 0.870 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -26.363 -5.990 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.051 3.949 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.043 4.043 13 O -0.247 6.247 14 C -0.048 4.048 15 C 0.065 3.935 16 H 0.114 0.886 17 O -0.367 6.367 18 C -0.086 4.086 19 N -0.311 5.311 20 C -0.015 4.015 21 C -0.163 4.163 22 C -0.084 4.084 23 C -0.198 4.198 24 C -0.047 4.047 25 N -0.265 5.265 26 C 0.132 3.868 27 O -0.302 6.302 28 C -0.183 4.183 29 C -0.227 4.227 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.181 0.819 42 H 0.188 0.812 43 H 0.198 0.802 44 H 0.274 0.726 45 H 0.148 0.852 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.141 -26.783 -5.481 27.362 hybrid contribution 1.662 1.446 -0.135 2.207 sum 0.521 -25.337 -5.617 25.957 Atomic orbital electron populations 1.69889 1.08996 1.30531 1.36431 1.26740 0.95462 1.04495 0.91340 0.85258 0.78738 0.75717 0.80018 1.18545 1.19395 1.18338 1.19695 0.98403 0.92423 1.42494 0.90510 1.17959 0.92671 0.93414 0.90810 1.20895 0.99356 0.96367 1.00607 1.20012 1.01175 0.90761 1.03452 1.18680 0.96527 0.85531 1.03573 1.85877 1.55012 1.12814 1.70992 1.23525 0.98540 0.83632 0.99127 1.21771 0.82290 0.90263 0.99155 0.88606 1.86595 1.26985 1.96394 1.26745 1.22428 0.95863 0.89045 1.01250 1.60248 1.55083 1.00355 1.15430 1.20645 0.94893 0.85653 1.00298 1.20927 0.96783 1.00186 0.98415 1.21881 1.00570 0.93260 0.92647 1.22498 0.95455 0.99128 1.02687 1.23064 0.94530 0.97176 0.89979 1.67204 1.38467 1.08783 1.12021 1.19257 0.89970 0.90416 0.87120 1.84630 1.71031 1.45781 1.28740 1.20705 0.97274 0.98706 1.01648 1.20804 1.03664 0.92570 1.05671 0.90217 0.87328 0.87631 0.91841 0.91147 0.76777 0.89357 0.92425 0.83700 0.90231 0.92362 0.81903 0.81167 0.80181 0.72589 0.85197 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.15 10.96 21.82 0.24 -43.91 16 2 C 0.03 1.71 5.13 85.23 0.44 2.14 16 3 Si 0.98 38.35 29.60 68.60 2.03 40.38 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.50 -27.07 9.04 23.40 0.21 -26.86 16 8 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 10 C -0.15 -8.24 8.64 22.49 0.19 -8.05 16 11 C -0.14 -6.67 9.92 22.11 0.22 -6.45 16 12 C 0.00 0.04 6.71 22.79 0.15 0.19 16 13 O -0.33 -12.79 10.09 -85.19 -0.86 -13.65 16 14 C 0.03 0.74 4.37 71.98 0.31 1.06 16 15 C 0.13 2.60 3.43 30.59 0.10 2.70 16 16 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 17 O -0.56 -13.60 13.25 -144.35 -1.91 -15.52 16 18 C 0.04 0.61 5.32 86.30 0.46 1.07 16 19 N -0.68 -9.26 6.44 -517.92 -3.33 -12.59 16 20 C 0.11 1.42 5.45 85.56 0.47 1.88 16 21 C -0.16 -2.31 5.42 -19.67 -0.11 -2.42 16 22 C -0.06 -0.57 9.80 22.45 0.22 -0.35 16 23 C -0.18 -1.57 10.11 22.37 0.23 -1.34 16 24 C 0.11 1.44 11.18 84.64 0.95 2.39 16 25 N -0.55 -11.24 10.39 -308.93 -3.21 -14.44 16 26 C 0.31 6.13 7.72 84.78 0.65 6.79 16 27 O -0.49 -9.94 12.91 -90.01 -1.16 -11.10 16 28 C -0.16 -7.07 8.96 22.11 0.20 -6.87 16 29 C -0.21 -10.05 9.74 22.48 0.22 -9.83 16 30 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 31 H 0.11 6.10 6.16 -2.91 -0.02 6.08 16 32 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.06 1.58 7.64 -2.39 -0.02 1.56 16 34 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 35 H 0.38 7.03 9.05 -74.06 -0.67 6.36 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.34 4.56 8.72 -89.69 -0.78 3.78 16 39 H 0.08 1.17 8.02 -2.39 -0.02 1.15 16 40 H 0.06 0.53 8.00 -2.39 -0.02 0.51 16 41 H 0.16 0.68 8.04 -2.91 -0.02 0.66 16 42 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.41 6.22 9.06 -74.05 -0.67 5.55 16 45 H 0.13 4.49 6.27 -2.91 -0.02 4.47 16 46 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -71.20 392.94 -4.49 -75.69 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -1.08 Total: 36.29 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 4.80 Total: -41.14 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -6.30 Total: -70.95 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -3.93 Total: -40.27 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -71.20 -4.49 -75.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600757915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.230 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds