Wall clock time and date at job start Wed Apr 1 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48496 * 109.47019 * 240.00307 * 3 2 1 5 5 H 1.48502 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47014 * 119.99870 * 3 2 1 7 7 C 1.37870 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00575 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99735 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46887 * 185.11071 * 9 7 2 11 11 C 1.46967 * 110.99777 * 295.19576 * 10 9 7 12 12 C 1.53048 * 109.36218 * 183.19123 * 11 10 9 13 13 N 1.46963 * 109.36734 * 301.60006 * 12 11 10 14 14 C 1.38320 * 111.00192 * 183.19448 * 13 12 11 15 15 N 1.32541 * 120.63589 * 295.11218 * 14 13 12 16 16 C 1.32079 * 121.14030 * 180.02562 * 15 14 13 17 17 N 1.31296 * 122.27941 * 0.02562 * 16 15 14 18 18 C 1.34086 * 120.87481 * 359.97438 * 17 16 15 19 19 S 1.75395 * 131.29680 * 180.02562 * 18 17 16 20 20 C 1.76327 * 92.45432 * 179.97438 * 19 18 17 21 21 C 1.32530 * 111.35837 * 0.02562 * 20 19 18 22 22 C 1.39085 * 119.09961 * 0.02562 * 18 17 16 23 23 C 1.52879 * 110.19943 * 179.97438 * 21 20 19 24 24 C 1.54131 * 104.90023 * 17.59131 * 23 21 20 25 25 C 1.52608 * 138.12188 * 180.02562 * 20 19 18 26 26 C 1.46957 * 110.87824 * 59.31825 * 13 12 11 27 27 C 1.46952 * 111.00424 * 58.99440 * 10 9 7 28 28 H 0.96995 * 120.00002 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47387 * 65.11168 * 9 7 2 30 30 H 1.08997 * 109.47233 * 305.10393 * 9 7 2 31 31 H 1.08997 * 109.48399 * 63.22479 * 11 10 9 32 32 H 1.08994 * 109.48724 * 303.15910 * 11 10 9 33 33 H 1.08999 * 109.48766 * 181.63528 * 12 11 10 34 34 H 1.09000 * 109.51199 * 61.57590 * 12 11 10 35 35 H 1.08004 * 118.85962 * 180.29805 * 16 15 14 36 36 H 1.09003 * 110.35268 * 136.44990 * 23 21 20 37 37 H 1.09003 * 110.34999 * 258.63216 * 23 21 20 38 38 H 1.09000 * 111.01020 * 91.48066 * 24 23 21 39 39 H 1.08992 * 111.01388 * 215.31737 * 24 23 21 40 40 H 1.08997 * 110.36837 * 281.33420 * 25 20 19 41 41 H 1.08999 * 110.36237 * 43.64972 * 25 20 19 42 42 H 1.08994 * 109.48461 * 60.65590 * 26 13 12 43 43 H 1.09004 * 109.48353 * 180.71330 * 26 13 12 44 44 H 1.08993 * 109.49349 * 296.78098 * 27 10 9 45 45 H 1.09001 * 109.48870 * 56.84726 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 7 2.2010 -3.6129 0.1213 11 6 3.0811 -3.6867 -1.0534 12 6 3.9995 -4.9041 -0.9237 13 7 4.7852 -4.7922 0.3132 14 6 5.6797 -5.8410 0.4289 15 7 5.2465 -7.0859 0.5674 16 6 6.0916 -8.0947 0.6792 17 7 7.3934 -7.9243 0.6603 18 6 7.9253 -6.7010 0.5242 19 16 9.5941 -6.1645 0.4640 20 6 9.1237 -4.4756 0.2757 21 6 7.8054 -4.3404 0.2615 22 6 7.0780 -5.6047 0.4027 23 6 7.4274 -2.8681 0.0979 24 6 8.7049 -2.1874 -0.4315 25 6 9.8024 -3.1172 0.1236 26 6 3.9052 -4.7184 1.4878 27 6 2.9867 -3.5010 1.3581 28 1 -0.4850 0.8400 0.0004 29 1 0.6953 -2.5969 -0.9341 30 1 0.5574 -2.5189 0.8387 31 1 3.6842 -2.7808 -1.1133 32 1 2.4765 -3.7817 -1.9553 33 1 4.6730 -4.9444 -1.7799 34 1 3.3978 -5.8123 -0.8913 35 1 5.6983 -9.0949 0.7856 36 1 6.6156 -2.7628 -0.6217 37 1 7.1391 -2.4418 1.0588 38 1 8.7178 -2.1744 -1.5213 39 1 8.8060 -1.1794 -0.0295 40 1 10.1516 -2.7571 1.0912 41 1 10.6328 -3.1848 -0.5792 42 1 3.3021 -5.6243 1.5478 43 1 4.5099 -4.6233 2.3897 44 1 3.5888 -2.5930 1.3256 45 1 2.3134 -3.4607 2.2143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:44 Heat of formation + Delta-G solvation = 77.644897 kcal Electronic energy + Delta-G solvation = -28168.461753 eV Core-core repulsion = 24504.931825 eV Total energy + Delta-G solvation = -3663.529928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.44814 -40.21111 -39.57009 -37.15773 -34.82662 -34.59638 -33.30674 -31.96187 -30.25695 -29.22609 -28.72401 -27.06201 -25.46819 -24.66465 -24.55625 -23.41907 -21.86776 -20.96372 -20.43761 -19.34892 -18.87739 -18.23477 -17.60109 -16.98235 -16.86678 -16.49017 -16.31357 -15.91134 -15.86788 -15.54578 -15.52188 -14.88399 -14.67237 -14.00456 -13.84364 -13.79579 -13.62216 -13.59056 -13.40775 -13.02540 -12.83652 -12.78731 -12.59223 -12.32275 -12.23322 -12.20531 -12.04099 -12.01861 -11.97564 -11.84637 -11.80513 -11.53558 -11.32504 -10.57212 -10.54164 -9.92887 -9.85919 -9.04114 -9.03683 -8.12473 -6.31552 -0.71770 -0.40189 -0.08996 0.73373 1.03810 1.40820 1.41882 1.49836 2.27678 2.40637 2.45153 3.05306 3.12845 3.13279 3.25231 3.30576 3.47575 3.73706 3.83981 4.03884 4.09576 4.16794 4.19377 4.21759 4.39997 4.44682 4.58207 4.59578 4.71331 4.76090 4.84620 4.85694 4.94476 5.01071 5.02385 5.06811 5.16514 5.19596 5.23551 5.34670 5.35703 5.36153 5.61329 5.64425 5.76146 5.95656 6.06119 6.25781 6.47337 6.83218 6.87976 7.40026 8.90311 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003593 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.926098 B = 7790.365119 C = 9539.948472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.202 3.798 10 N -0.543 5.543 11 C 0.072 3.928 12 C 0.081 3.919 13 N -0.485 5.485 14 C 0.396 3.604 15 N -0.563 5.563 16 C 0.316 3.684 17 N -0.504 5.504 18 C 0.065 3.935 19 S 0.216 5.784 20 C -0.198 4.198 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.056 4.056 24 C -0.114 4.114 25 C -0.037 4.037 26 C 0.080 3.920 27 C 0.074 3.926 28 H 0.264 0.736 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.235 0.765 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.917 -10.276 0.484 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.267 5.267 11 C -0.057 4.057 12 C -0.046 4.046 13 N -0.210 5.210 14 C 0.151 3.849 15 N -0.282 5.282 16 C 0.024 3.976 17 N -0.221 5.221 18 C -0.185 4.185 19 S 0.478 5.522 20 C -0.313 4.313 21 C -0.101 4.101 22 C -0.166 4.166 23 C -0.095 4.095 24 C -0.152 4.152 25 C -0.076 4.076 26 C -0.047 4.047 27 C -0.055 4.055 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.859 -11.877 0.673 25.769 hybrid contribution -1.590 2.160 -0.084 2.683 sum 21.269 -9.717 0.589 23.390 Atomic orbital electron populations 1.70064 1.07658 1.27880 1.51187 1.25794 0.95510 1.02793 0.94536 0.85649 0.78434 0.78805 0.79089 1.19281 1.21130 1.19350 1.21925 0.93489 0.92629 1.51116 0.92113 1.19384 0.91074 0.86596 0.95397 1.62611 1.17456 1.44451 1.02199 1.21893 0.93830 0.96031 0.93956 1.22114 0.94390 0.98167 0.89900 1.60140 1.19231 1.36708 1.04874 1.20247 0.90003 0.87600 0.87079 1.68558 1.41978 1.00674 1.17014 1.25433 0.83484 0.99259 0.89460 1.68262 1.15754 1.21483 1.16626 1.24068 1.01270 0.92053 1.01147 1.83797 0.96445 0.95991 1.75986 1.26102 0.98498 0.99614 1.07115 1.21118 0.92420 0.94734 1.01872 1.20206 0.93880 0.94638 1.07917 1.21075 0.99250 0.87178 1.02011 1.22366 0.91996 0.99270 1.01590 1.21106 0.98080 0.84979 1.03466 1.22109 0.93215 0.98381 0.90975 1.21851 0.94621 0.95817 0.93178 0.92699 0.97720 0.97408 0.94699 0.90899 0.89961 0.93126 0.74868 0.91513 0.90467 0.90102 0.88097 0.88003 0.88241 0.92989 0.90192 0.94621 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 2 C 0.01 0.71 5.46 84.65 0.46 1.18 16 3 Si 0.96 42.65 29.54 68.60 2.03 44.67 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -29.65 7.66 25.60 0.20 -29.45 16 8 H 0.06 3.19 5.82 -2.91 -0.02 3.17 16 9 C 0.20 10.44 5.14 85.56 0.44 10.88 16 10 N -0.54 -23.08 4.92 -900.30 -4.43 -27.51 16 11 C 0.07 2.71 5.32 86.31 0.46 3.17 16 12 C 0.08 2.58 5.47 86.31 0.47 3.05 16 13 N -0.49 -15.18 4.60 -699.10 -3.22 -18.40 16 14 C 0.40 11.83 5.41 133.93 0.72 12.56 16 15 N -0.56 -16.02 9.78 -196.39 -1.92 -17.95 16 16 C 0.32 7.54 12.26 180.95 2.22 9.75 16 17 N -0.50 -13.07 10.49 -196.72 -2.06 -15.13 16 18 C 0.07 1.71 7.67 84.55 0.65 2.36 16 19 S 0.22 4.27 23.23 -56.49 -1.31 2.96 16 20 C -0.20 -3.88 7.24 25.16 0.18 -3.70 16 21 C -0.09 -2.21 6.60 -18.14 -0.12 -2.33 16 22 C -0.15 -4.23 6.07 -20.02 -0.12 -4.36 16 23 C -0.06 -1.25 6.82 30.94 0.21 -1.04 16 24 C -0.11 -1.70 7.13 31.37 0.22 -1.48 16 25 C -0.04 -0.48 6.82 30.86 0.21 -0.27 16 26 C 0.08 2.59 5.42 86.31 0.47 3.06 16 27 C 0.07 2.86 5.24 86.31 0.45 3.31 16 28 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.00 0.26 8.12 -2.39 -0.02 0.24 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.03 1.43 6.78 -2.39 -0.02 1.41 16 32 H 0.07 2.73 8.12 -2.39 -0.02 2.72 16 33 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 34 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 35 H 0.24 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 1.74 7.94 -2.39 -0.02 1.72 16 43 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 44 H 0.04 1.49 6.62 -2.39 -0.02 1.48 16 45 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -64.41 372.08 -2.50 -66.91 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.01 Total: 11.95 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 7.13 Total: 6.68 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -11.34 Total: -133.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.31 Total: 2.96 kcal Total: -64.41 -2.50 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.556 kcal (2) G-P(sol) polarization free energy of solvation -64.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds