Wall clock time and date at job start Wed Apr 1 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38228 * 119.77235 * 2 1 4 4 C 1.38610 * 120.46115 * 180.02562 * 3 2 1 5 5 C 1.38561 * 119.72012 * 0.03304 * 4 3 2 6 6 C 1.40948 * 119.81940 * 359.96667 * 5 4 3 7 7 C 1.38571 * 119.82178 * 0.02562 * 6 5 4 8 8 C 1.47818 * 105.88099 * 179.97438 * 6 5 4 9 9 O 1.21448 * 125.70889 * 180.26341 * 8 6 5 10 10 N 1.34524 * 108.58113 * 0.02562 * 8 6 5 11 11 C 1.46493 * 124.46257 * 179.97438 * 10 8 6 12 12 C 1.50709 * 109.46975 * 89.99869 * 11 10 8 13 13 O 1.21274 * 119.99911 * 354.92672 * 12 11 10 14 14 N 1.34777 * 119.99588 * 174.92982 * 12 11 10 15 15 C 1.46503 * 119.99594 * 185.39658 * 14 12 11 16 16 C 1.50701 * 109.47150 * 89.99547 * 15 14 12 17 17 H 1.07991 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99577 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00078 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99846 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47142 * 89.99275 * 20 18 16 22 22 H 1.48490 * 109.46833 * 209.99835 * 20 18 16 23 23 H 1.48500 * 109.46811 * 329.99736 * 20 18 16 24 24 C 1.46492 * 120.00299 * 5.39131 * 14 12 11 25 25 C 1.53003 * 109.47267 * 124.24977 * 24 14 12 26 26 C 1.53008 * 109.47137 * 244.24455 * 24 14 12 27 27 C 1.34529 * 111.07761 * 359.97438 * 10 8 6 28 28 O 1.21445 * 125.70816 * 179.97438 * 27 10 8 29 29 H 1.08995 * 109.47565 * 269.98294 * 1 2 3 30 30 H 1.09001 * 109.46884 * 29.97948 * 1 2 3 31 31 H 1.08998 * 109.46851 * 149.97776 * 1 2 3 32 32 H 1.08000 * 119.76937 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.14291 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.13745 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.47609 * 209.99838 * 11 10 8 36 36 H 1.08998 * 109.46948 * 330.00346 * 11 10 8 37 37 H 1.09001 * 109.46861 * 209.99925 * 15 14 12 38 38 H 1.09008 * 109.47094 * 329.99560 * 15 14 12 39 39 H 0.97004 * 119.99727 * 180.02562 * 19 18 16 40 40 H 1.08992 * 109.47359 * 4.24659 * 24 14 12 41 41 H 1.09005 * 109.46707 * 55.63762 * 25 24 14 42 42 H 1.08996 * 109.47549 * 175.63918 * 25 24 14 43 43 H 1.09002 * 109.46783 * 295.64111 * 25 24 14 44 44 H 1.09007 * 109.46612 * 64.59029 * 26 24 14 45 45 H 1.09005 * 109.47037 * 184.58314 * 26 24 14 46 46 H 1.08996 * 109.46995 * 304.58944 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1998 0.0000 4 6 3.5794 1.2165 -0.0005 5 6 4.2808 0.0215 -0.0018 6 6 3.5809 -1.2020 -0.0018 7 6 2.1952 -1.2032 -0.0011 8 6 4.6141 -2.2590 -0.0039 9 8 4.4044 -3.4552 -0.0090 10 7 5.8256 -1.6742 -0.0044 11 6 7.0972 -2.4016 -0.0059 12 6 7.5321 -2.6502 -1.4273 13 8 6.8046 -2.3408 -2.3469 14 7 8.7296 -3.2163 -1.6763 15 6 9.2038 -3.3501 -3.0560 16 6 9.9876 -2.1213 -3.4392 17 1 10.1190 -1.3207 -2.7265 18 6 10.5360 -2.0189 -4.7001 19 7 10.3755 -2.9938 -5.5681 20 14 11.5082 -0.4961 -5.1749 21 1 12.9404 -0.6985 -4.8389 22 1 11.3710 -0.2564 -6.6339 23 1 10.9858 0.6770 -4.4292 24 6 9.5571 -3.6977 -0.5674 25 6 9.8919 -5.1748 -0.7848 26 6 10.8519 -2.8849 -0.5070 27 6 5.7157 -0.3335 -0.0035 28 8 6.6406 0.4536 -0.0032 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6459 2.1308 0.0004 33 1 4.1105 2.1569 -0.0001 34 1 1.6537 -2.1377 -0.0015 35 1 7.8549 -1.8099 0.5077 36 1 6.9710 -3.3549 0.5074 37 1 9.8435 -4.2290 -3.1367 38 1 8.3499 -3.4596 -3.7247 39 1 10.7617 -2.9219 -6.4550 40 1 9.0119 -3.5828 0.3693 41 1 10.3683 -5.3000 -1.7572 42 1 10.5705 -5.5126 -0.0015 43 1 8.9755 -5.7639 -0.7506 44 1 10.6184 -1.8465 -0.2712 45 1 11.5028 -3.2952 0.2652 46 1 11.3569 -2.9337 -1.4717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:41 Heat of formation + Delta-G solvation = -74.639884 kcal Electronic energy + Delta-G solvation = -30400.265997 eV Core-core repulsion = 26255.086884 eV Total energy + Delta-G solvation = -4145.179113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.52379 -40.94937 -39.86502 -39.68185 -37.75830 -37.02146 -35.03833 -34.27607 -32.57263 -32.50241 -30.91771 -29.13642 -28.08579 -27.64787 -25.98091 -25.07758 -23.96945 -22.87194 -22.60761 -21.19328 -19.91532 -18.88202 -18.75685 -18.62714 -18.37425 -17.36577 -17.19056 -16.79024 -16.49192 -16.29751 -16.13838 -15.65987 -15.24151 -15.14309 -15.09782 -14.95101 -14.91830 -14.57190 -14.53944 -14.04928 -13.45605 -13.40414 -13.27441 -13.22548 -13.01805 -12.99572 -12.90703 -12.81250 -12.65095 -12.53234 -12.27933 -12.16470 -11.78251 -11.73072 -11.62648 -11.55828 -11.54264 -10.65404 -10.59884 -10.25576 -9.93256 -9.55860 -8.24769 -6.36758 -1.06994 -0.06370 0.90895 0.99392 1.31784 1.34931 1.44861 1.56061 1.72492 2.22451 2.38591 2.47276 2.58732 3.04878 3.13363 3.40259 3.55804 3.78057 3.83501 3.85262 3.97159 4.07709 4.10220 4.15542 4.23609 4.33682 4.35189 4.68792 4.78102 4.83083 4.84715 4.89248 4.92468 4.94204 5.00782 5.05981 5.07173 5.15835 5.27044 5.35972 5.39653 5.44368 5.54156 5.58116 5.69590 5.78707 5.99650 6.04555 6.39172 6.60456 6.71481 7.16052 7.34364 8.83006 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003168 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.273064 B = 8836.196502 C = 9740.731750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.085 4.085 4 C -0.038 4.038 5 C -0.166 4.166 6 C -0.150 4.150 7 C -0.047 4.047 8 C 0.576 3.424 9 O -0.491 6.491 10 N -0.567 5.567 11 C 0.097 3.903 12 C 0.482 3.518 13 O -0.592 6.592 14 N -0.590 5.590 15 C 0.264 3.736 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.277 1.277 24 C 0.120 3.880 25 C -0.157 4.157 26 C -0.157 4.157 27 C 0.571 3.429 28 O -0.494 6.494 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.184 0.816 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.034 0.966 38 H -0.010 1.010 39 H 0.266 0.734 40 H 0.114 0.886 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.180 5.606 19.299 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.103 4.103 4 C -0.056 4.056 5 C -0.169 4.169 6 C -0.153 4.153 7 C -0.066 4.066 8 C 0.367 3.633 9 O -0.365 6.365 10 N -0.307 5.307 11 C -0.027 4.027 12 C 0.269 3.731 13 O -0.473 6.473 14 N -0.321 5.321 15 C 0.143 3.857 16 C -0.568 4.568 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.202 1.202 24 C 0.018 3.982 25 C -0.214 4.214 26 C -0.215 4.215 27 C 0.363 3.637 28 O -0.368 6.368 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.201 0.799 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.052 0.948 38 H 0.008 0.992 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.012 5.412 18.647 25.815 hybrid contribution 1.227 0.259 -1.172 1.716 sum -15.785 5.671 17.475 24.222 Atomic orbital electron populations 1.21001 0.86910 1.04933 1.04491 1.20625 0.98735 0.91402 0.94521 1.21797 0.92164 1.00011 0.96297 1.21137 0.94834 0.96156 0.93520 1.20457 0.91247 0.96538 1.08696 1.20440 0.95434 0.92267 1.07189 1.20984 0.89691 1.00688 0.95218 1.18807 0.83209 0.88064 0.73217 1.90749 1.84229 1.15955 1.45522 1.46197 1.08339 1.08859 1.67318 1.21772 0.85113 1.01213 0.94593 1.21303 0.81942 0.77957 0.91864 1.90647 1.54749 1.53764 1.48127 1.48343 1.16999 1.57477 1.09277 1.18725 0.92921 0.96600 0.77469 1.21627 1.32760 1.03804 0.98633 0.92967 1.25801 0.97625 0.99561 0.96095 1.70054 1.46193 1.34067 1.06518 0.85502 0.79362 0.79171 0.77341 1.18518 1.20615 1.20240 1.21532 0.92763 0.95089 0.88801 1.22124 1.02377 0.94042 1.02892 1.22148 0.97008 0.99376 1.02938 1.18921 0.90347 0.81180 0.73268 1.90775 1.46548 1.53930 1.45530 0.88538 0.88863 0.90348 0.79904 0.82544 0.82735 0.83899 0.83032 0.94792 0.99222 0.92483 0.86840 0.94000 0.87996 0.92449 0.93609 0.88696 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.00 71.24 0.71 0.18 16 2 C -0.05 -0.62 5.89 -19.78 -0.12 -0.74 16 3 C -0.09 -0.94 9.68 22.36 0.22 -0.73 16 4 C -0.04 -0.69 10.09 22.44 0.23 -0.46 16 5 C -0.17 -4.48 6.41 -20.00 -0.13 -4.61 16 6 C -0.15 -4.00 6.41 -20.00 -0.13 -4.13 16 7 C -0.05 -0.87 9.74 22.44 0.22 -0.65 16 8 C 0.58 19.42 8.02 86.82 0.70 20.12 16 9 O -0.49 -18.31 17.68 -3.55 -0.06 -18.37 16 10 N -0.57 -19.82 2.12 -767.04 -1.62 -21.44 16 11 C 0.10 3.22 4.55 85.64 0.39 3.61 16 12 C 0.48 22.14 7.73 87.66 0.68 22.82 16 13 O -0.59 -33.62 15.99 -3.01 -0.05 -33.67 16 14 N -0.59 -26.37 2.39 -802.12 -1.92 -28.28 16 15 C 0.26 14.73 4.73 85.63 0.41 15.14 16 16 C -0.53 -31.30 7.71 25.60 0.20 -31.10 16 17 H 0.05 3.09 7.59 -2.92 -0.02 3.07 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 20 Si 0.96 46.60 29.54 68.60 2.03 48.62 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.12 3.83 3.12 45.00 0.14 3.98 16 25 C -0.16 -4.48 9.19 71.98 0.66 -3.82 16 26 C -0.16 -4.99 8.74 71.98 0.63 -4.36 16 27 C 0.57 19.94 8.02 86.82 0.70 20.63 16 28 O -0.49 -19.69 17.68 -3.54 -0.06 -19.75 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.15 8.08 -2.39 -0.02 0.13 16 31 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 32 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 4.06 7.68 -2.39 -0.02 4.04 16 36 H 0.15 3.97 7.55 -2.39 -0.02 3.95 16 37 H 0.03 1.91 6.13 -2.39 -0.01 1.89 16 38 H -0.01 -0.68 7.36 -2.38 -0.02 -0.70 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.11 2.67 5.85 -2.39 -0.01 2.66 16 41 H 0.04 1.46 6.34 -2.38 -0.02 1.44 16 42 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.05 1.94 6.60 -2.39 -0.02 1.92 16 Total: -1.00 -89.35 389.93 5.56 -83.79 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.01 Total: 9.61 kcal Atomic # 6 Polarization: 30.86 SS G_CDS: 5.96 Total: 36.82 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.25 Total: -107.05 kcal Atomic # 8 Polarization: -71.61 SS G_CDS: -0.17 Total: -71.79 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -89.35 5.56 -83.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.148 kcal (2) G-P(sol) polarization free energy of solvation -89.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds