Wall clock time and date at job start Wed Apr 1 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00399 * 2 1 4 4 H 1.48501 * 109.47252 * 239.99861 * 3 2 1 5 5 H 1.48505 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47617 * 119.99361 * 3 2 1 7 7 C 1.38812 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00111 * 163.08407 * 7 2 1 9 9 N 1.36940 * 120.00212 * 343.08277 * 7 2 1 10 10 C 1.46927 * 120.62703 * 331.84598 * 9 7 2 11 11 C 1.53198 * 108.77533 * 233.58560 * 10 9 7 12 12 C 1.53044 * 109.30863 * 305.36496 * 11 10 9 13 13 N 1.46898 * 109.45528 * 181.38297 * 12 11 10 14 14 C 1.46904 * 110.99806 * 155.00142 * 13 12 11 15 15 C 1.50700 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.33858 * 122.08125 * 95.00387 * 15 14 13 17 17 S 1.76250 * 108.19357 * 179.97438 * 16 15 14 18 18 C 1.76172 * 89.83144 * 359.97438 * 17 16 15 19 19 C 1.47834 * 125.47342 * 179.97438 * 18 17 16 20 20 C 1.39529 * 119.74405 * 0.02562 * 19 18 17 21 21 C 1.38364 * 119.05288 * 179.97438 * 20 19 18 22 22 C 1.38806 * 118.52898 * 359.97438 * 21 20 19 23 23 C 1.38294 * 119.40092 * 0.28240 * 22 21 20 24 24 N 1.31731 * 120.91028 * 359.41759 * 23 22 21 25 25 N 1.30233 * 109.05764 * 0.22680 * 18 17 16 26 26 C 1.53041 * 109.53841 * 61.36937 * 12 11 10 27 27 C 1.46919 * 120.63136 * 151.82395 * 9 7 2 28 28 H 0.97005 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58832 * 113.80091 * 10 9 7 30 30 H 1.09001 * 109.70527 * 353.43816 * 10 9 7 31 31 H 1.08997 * 109.49671 * 185.41513 * 11 10 9 32 32 H 1.08997 * 109.49590 * 65.31422 * 11 10 9 33 33 H 1.08996 * 109.46037 * 301.35624 * 12 11 10 34 34 H 1.00901 * 111.00591 * 31.05024 * 13 12 11 35 35 H 1.09004 * 109.47008 * 60.00135 * 14 13 12 36 36 H 1.08999 * 109.47041 * 300.00012 * 14 13 12 37 37 H 1.08003 * 125.89826 * 0.02562 * 16 15 14 38 38 H 1.08003 * 120.47453 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.73685 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.30082 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.54972 * 179.69918 * 23 22 21 42 42 H 1.09002 * 109.50092 * 58.58067 * 26 12 11 43 43 H 1.09000 * 109.49671 * 178.68542 * 26 12 11 44 44 H 1.09006 * 109.58387 * 246.20290 * 27 9 7 45 45 H 1.09000 * 109.58920 * 6.48019 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2716 9 7 1.3699 -2.3623 0.3461 10 6 0.2258 -2.3399 1.2677 11 6 0.4970 -3.3190 2.4143 12 6 0.8115 -4.7007 1.8361 13 7 1.0396 -5.6500 2.9337 14 6 0.7593 -7.0271 2.5055 15 6 1.0032 -7.9702 3.6553 16 6 0.0169 -8.3737 4.4654 17 16 0.7045 -9.4605 5.6706 18 6 2.2946 -9.2559 4.9403 19 6 3.5419 -9.8979 5.4068 20 6 3.5115 -10.7465 6.5139 21 6 4.6873 -11.3401 6.9379 22 6 5.8565 -11.0672 6.2414 23 6 5.8158 -10.2119 5.1554 24 7 4.6825 -9.6636 4.7679 25 7 2.1958 -8.4441 3.9267 26 6 2.0671 -4.6174 0.9651 27 6 1.8137 -3.6529 -0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6404 0.7365 30 1 0.0965 -1.3346 1.6687 31 1 -0.3837 -3.3839 3.0532 32 1 1.3466 -2.9675 2.9995 33 1 -0.0285 -5.0408 1.2305 34 1 0.4907 -5.4047 3.7441 35 1 1.4142 -7.2895 1.6746 36 1 -0.2803 -7.1041 2.1871 37 1 -1.0210 -8.0840 4.3924 38 1 2.5835 -10.9379 7.0321 39 1 4.6949 -12.0019 7.7915 40 1 6.7904 -11.5147 6.5478 41 1 6.7250 -9.9940 4.6147 42 1 2.9020 -4.2536 1.5641 43 1 2.3038 -5.6063 0.5726 44 1 1.0401 -4.0605 -0.8487 45 1 2.7331 -3.5131 -0.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:48 Heat of formation + Delta-G solvation = 110.494494 kcal Electronic energy + Delta-G solvation = -26182.352827 eV Core-core repulsion = 22520.247365 eV Total energy + Delta-G solvation = -3662.105462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61925 -39.73388 -37.89730 -35.12330 -33.18343 -32.75928 -31.99995 -30.48845 -29.76763 -28.89712 -26.47581 -25.51586 -24.16586 -23.93669 -22.39105 -21.93134 -21.15147 -19.58653 -19.00103 -18.44584 -17.14421 -16.69389 -16.51268 -16.20171 -15.42205 -15.28572 -14.82584 -14.80391 -14.42743 -13.98944 -13.70314 -13.60486 -13.53820 -13.42222 -13.31747 -13.08300 -12.71693 -12.37063 -12.20800 -12.02960 -11.40920 -11.29409 -10.93899 -10.68780 -10.63456 -10.45126 -10.29244 -10.15874 -10.10699 -9.87245 -9.85328 -9.81942 -9.56222 -9.52787 -9.38075 -8.64374 -8.40871 -8.11961 -6.60243 -5.73132 -3.14650 -0.15585 0.81490 0.94068 1.06744 1.37407 2.62122 3.43217 3.46453 3.48168 3.50601 3.51226 4.05766 4.40755 4.45466 4.54795 4.55672 4.60540 4.64879 4.89380 5.03448 5.09980 5.22518 5.41046 5.43924 5.45747 5.51603 5.58743 5.68482 5.76937 5.79746 5.94908 5.99516 6.18581 6.24202 6.42133 6.53817 6.64219 6.70165 6.72862 6.91331 7.13443 7.36995 7.42988 7.46700 7.63563 7.69665 7.71860 7.85859 8.51809 9.27882 9.91625 10.48789 11.35689 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.002033 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.541860 B =13766.680279 C =14741.704579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.140 4.140 12 C 0.099 3.901 13 N -0.679 5.679 14 C 0.131 3.869 15 C 0.080 3.920 16 C -0.235 4.235 17 S 0.091 5.909 18 C 0.102 3.898 19 C 0.197 3.803 20 C -0.153 4.153 21 C -0.071 4.071 22 C -0.166 4.166 23 C 0.107 3.893 24 N -0.442 5.442 25 N -0.403 5.403 26 C -0.117 4.117 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.335 0.665 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.182 0.818 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.014 0.986 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -26.273 15.905 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.010 4.010 13 N -0.311 5.311 14 C -0.001 4.001 15 C -0.054 4.054 16 C -0.375 4.375 17 S 0.346 5.654 18 C -0.174 4.174 19 C 0.057 3.943 20 C -0.176 4.176 21 C -0.097 4.097 22 C -0.186 4.186 23 C -0.052 4.052 24 N -0.152 5.152 25 N -0.116 5.116 26 C -0.157 4.157 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.199 0.801 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.032 0.968 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.056 -26.026 15.577 30.601 hybrid contribution -0.811 0.829 0.138 1.168 sum 3.244 -25.196 15.714 29.872 Atomic orbital electron populations 1.70020 1.05245 1.25492 1.54269 1.25039 0.95302 0.98390 1.01092 0.86364 0.78894 0.83341 0.78151 1.20899 1.21711 1.21043 1.19167 0.92542 0.84864 1.41255 0.91748 1.44042 1.35815 1.01630 1.49959 1.20728 0.88647 0.98039 0.87802 1.22408 1.00098 0.95263 1.00244 1.21489 0.96981 0.91530 0.90998 1.60554 1.61914 1.00171 1.08432 1.20526 0.99418 0.87050 0.93112 1.20272 0.86317 0.99548 0.99264 1.27025 1.05134 1.05347 1.00013 1.84694 1.03555 1.44964 1.32221 1.25397 0.95002 1.00659 0.96347 1.18552 0.89470 0.94103 0.92181 1.21988 1.00035 0.98271 0.97264 1.21496 0.91824 0.97481 0.98888 1.22344 0.99545 0.99663 0.97092 1.22929 0.95849 0.92324 0.94054 1.67771 0.97683 1.20976 1.28740 1.66313 1.24033 1.07311 1.13959 1.22003 0.97311 0.98577 0.97764 1.20935 0.97511 0.86837 0.92920 0.93681 0.96613 0.89353 0.93703 0.91807 0.94538 0.84713 0.89042 0.93641 0.80115 0.84580 0.84076 0.84198 0.81902 0.91693 0.93408 0.96801 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.70 11.19 55.49 0.62 -26.08 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 3 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 8 H 0.06 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.32 2.99 -172.31 -0.52 -15.83 16 10 C 0.17 4.24 5.30 -3.71 -0.02 4.22 16 11 C -0.14 -2.76 5.36 -26.61 -0.14 -2.90 16 12 C 0.10 1.75 2.46 -67.67 -0.17 1.58 16 13 N -0.68 -10.54 6.30 -107.94 -0.68 -11.22 16 14 C 0.13 1.77 5.89 -4.97 -0.03 1.74 16 15 C 0.08 1.05 6.20 -84.41 -0.52 0.53 16 16 C -0.24 -2.42 11.07 29.19 0.32 -2.09 16 17 S 0.09 0.84 22.37 -107.50 -2.40 -1.57 16 18 C 0.10 1.29 7.42 -14.30 -0.11 1.18 16 19 C 0.20 2.26 6.75 -83.04 -0.56 1.70 16 20 C -0.15 -1.21 9.64 -39.05 -0.38 -1.59 16 21 C -0.07 -0.42 10.16 -39.32 -0.40 -0.82 16 22 C -0.17 -0.99 10.11 -39.35 -0.40 -1.39 16 23 C 0.11 0.92 11.17 -17.57 -0.20 0.73 16 24 N -0.44 -5.55 10.26 -9.85 -0.10 -5.65 16 25 N -0.40 -6.03 10.48 -7.56 -0.08 -6.11 16 26 C -0.12 -2.24 5.59 -26.61 -0.15 -2.39 16 27 C 0.14 3.20 6.52 -3.71 -0.02 3.17 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 31 H 0.04 0.78 8.10 -51.93 -0.42 0.35 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.65 7.80 -51.93 -0.40 0.24 16 34 H 0.33 4.81 8.32 -39.29 -0.33 4.48 16 35 H 0.09 1.35 7.41 -51.93 -0.38 0.96 16 36 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 37 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.14 0.79 7.29 -52.48 -0.38 0.41 16 39 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.05 0.84 7.42 -51.93 -0.39 0.45 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -33.71 381.98 -11.81 -45.52 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.38 Total: 1.58 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.00 Total: -3.57 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.75 Total: -64.88 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.40 Total: -1.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.71 -11.81 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.018 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds