Wall clock time and date at job start Wed Apr 1 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00399 * 2 1 4 4 H 1.48501 * 109.47252 * 239.99861 * 3 2 1 5 5 H 1.48505 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47617 * 119.99361 * 3 2 1 7 7 C 1.38812 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00111 * 163.08407 * 7 2 1 9 9 N 1.36940 * 120.00212 * 343.08277 * 7 2 1 10 10 C 1.46927 * 120.62703 * 331.84598 * 9 7 2 11 11 C 1.53198 * 108.77533 * 233.58560 * 10 9 7 12 12 C 1.53044 * 109.30863 * 305.36496 * 11 10 9 13 13 N 1.46898 * 109.45528 * 181.38297 * 12 11 10 14 14 C 1.46904 * 110.99806 * 155.00142 * 13 12 11 15 15 C 1.50700 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.33858 * 122.08125 * 95.00387 * 15 14 13 17 17 S 1.76250 * 108.19357 * 179.97438 * 16 15 14 18 18 C 1.76172 * 89.83144 * 359.97438 * 17 16 15 19 19 C 1.47834 * 125.47342 * 179.97438 * 18 17 16 20 20 C 1.39529 * 119.74405 * 0.02562 * 19 18 17 21 21 C 1.38364 * 119.05288 * 179.97438 * 20 19 18 22 22 C 1.38806 * 118.52898 * 359.97438 * 21 20 19 23 23 C 1.38294 * 119.40092 * 0.28240 * 22 21 20 24 24 N 1.31731 * 120.91028 * 359.41759 * 23 22 21 25 25 N 1.30233 * 109.05764 * 0.22680 * 18 17 16 26 26 C 1.53041 * 109.53841 * 61.36937 * 12 11 10 27 27 C 1.46919 * 120.63136 * 151.82395 * 9 7 2 28 28 H 0.97005 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58832 * 113.80091 * 10 9 7 30 30 H 1.09001 * 109.70527 * 353.43816 * 10 9 7 31 31 H 1.08997 * 109.49671 * 185.41513 * 11 10 9 32 32 H 1.08997 * 109.49590 * 65.31422 * 11 10 9 33 33 H 1.08996 * 109.46037 * 301.35624 * 12 11 10 34 34 H 1.00901 * 111.00591 * 31.05024 * 13 12 11 35 35 H 1.09004 * 109.47008 * 60.00135 * 14 13 12 36 36 H 1.08999 * 109.47041 * 300.00012 * 14 13 12 37 37 H 1.08003 * 125.89826 * 0.02562 * 16 15 14 38 38 H 1.08003 * 120.47453 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.73685 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.30082 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.54972 * 179.69918 * 23 22 21 42 42 H 1.09002 * 109.50092 * 58.58067 * 26 12 11 43 43 H 1.09000 * 109.49671 * 178.68542 * 26 12 11 44 44 H 1.09006 * 109.58387 * 246.20290 * 27 9 7 45 45 H 1.09000 * 109.58920 * 6.48019 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2716 9 7 1.3699 -2.3623 0.3461 10 6 0.2258 -2.3399 1.2677 11 6 0.4970 -3.3190 2.4143 12 6 0.8115 -4.7007 1.8361 13 7 1.0396 -5.6500 2.9337 14 6 0.7593 -7.0271 2.5055 15 6 1.0032 -7.9702 3.6553 16 6 0.0169 -8.3737 4.4654 17 16 0.7045 -9.4605 5.6706 18 6 2.2946 -9.2559 4.9403 19 6 3.5419 -9.8979 5.4068 20 6 3.5115 -10.7465 6.5139 21 6 4.6873 -11.3401 6.9379 22 6 5.8565 -11.0672 6.2414 23 6 5.8158 -10.2119 5.1554 24 7 4.6825 -9.6636 4.7679 25 7 2.1958 -8.4441 3.9267 26 6 2.0671 -4.6174 0.9651 27 6 1.8137 -3.6529 -0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6404 0.7365 30 1 0.0965 -1.3346 1.6687 31 1 -0.3837 -3.3839 3.0532 32 1 1.3466 -2.9675 2.9995 33 1 -0.0285 -5.0408 1.2305 34 1 0.4907 -5.4047 3.7441 35 1 1.4142 -7.2895 1.6746 36 1 -0.2803 -7.1041 2.1871 37 1 -1.0210 -8.0840 4.3924 38 1 2.5835 -10.9379 7.0321 39 1 4.6949 -12.0019 7.7915 40 1 6.7904 -11.5147 6.5478 41 1 6.7250 -9.9940 4.6147 42 1 2.9020 -4.2536 1.5641 43 1 2.3038 -5.6063 0.5726 44 1 1.0401 -4.0605 -0.8487 45 1 2.7331 -3.5131 -0.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:47 Heat of formation + Delta-G solvation = 87.728219 kcal Electronic energy + Delta-G solvation = -26183.340047 eV Core-core repulsion = 22520.247365 eV Total energy + Delta-G solvation = -3663.092682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29478 -40.55100 -39.49223 -36.67388 -34.34656 -33.54686 -33.23850 -31.94787 -31.33874 -30.22242 -27.62650 -26.64088 -25.71102 -24.52959 -23.86018 -23.15759 -22.67793 -20.78891 -20.31119 -19.26565 -18.67292 -17.81294 -17.15300 -16.93081 -16.73297 -16.56015 -16.25464 -15.75108 -15.62386 -15.38136 -15.31298 -14.85629 -14.70938 -14.42215 -14.25581 -14.02984 -13.92939 -13.78898 -13.62398 -13.09073 -12.97255 -12.88744 -12.58635 -12.51514 -12.20857 -12.04650 -11.99309 -11.77845 -11.30542 -11.19162 -11.01646 -10.79737 -10.67458 -10.53686 -10.45458 -10.28088 -9.43644 -9.28372 -8.68799 -7.88181 -5.33135 -0.86319 0.18265 0.24879 0.43084 0.58093 1.45927 1.48654 1.55588 1.76357 2.51129 2.78464 2.88398 3.21271 3.32552 3.45211 3.69128 3.81246 3.97363 4.00563 4.03746 4.08094 4.14503 4.20253 4.24122 4.43928 4.48905 4.53750 4.56968 4.69273 4.70256 4.71882 4.87313 4.95512 4.99112 5.00869 5.09486 5.16924 5.19056 5.23930 5.39822 5.51736 5.64028 5.68175 5.72660 6.08074 6.39090 6.46103 6.73902 7.02381 7.14677 7.85529 8.37655 9.18333 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.002033 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.541860 B =13766.680279 C =14741.704579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.062 0.938 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.125 4.125 12 C 0.111 3.889 13 N -0.684 5.684 14 C 0.136 3.864 15 C 0.053 3.947 16 C -0.231 4.231 17 S 0.162 5.838 18 C 0.077 3.923 19 C 0.159 3.841 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.151 4.151 23 C 0.086 3.914 24 N -0.494 5.494 25 N -0.453 5.453 26 C -0.104 4.104 27 C 0.143 3.857 28 H 0.251 0.749 29 H 0.000 1.000 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.209 0.791 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.016 0.984 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -28.604 18.346 34.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.165 4.165 12 C 0.002 3.998 13 N -0.316 5.316 14 C 0.004 3.996 15 C -0.080 4.080 16 C -0.371 4.371 17 S 0.417 5.583 18 C -0.198 4.198 19 C 0.020 3.980 20 C -0.173 4.173 21 C -0.092 4.092 22 C -0.172 4.172 23 C -0.073 4.073 24 N -0.205 5.205 25 N -0.168 5.168 26 C -0.144 4.144 27 C 0.017 3.983 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.226 0.774 38 H 0.173 0.827 39 H 0.198 0.802 40 H 0.194 0.806 41 H 0.193 0.807 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.149 -28.395 18.033 33.892 hybrid contribution -0.789 1.405 -0.555 1.704 sum 3.360 -26.990 17.477 32.329 Atomic orbital electron populations 1.70167 1.06544 1.25953 1.55305 1.25796 0.96137 1.01450 1.01198 0.85338 0.77614 0.79191 0.78288 1.20091 1.21683 1.20634 1.19461 0.92746 0.86191 1.41107 0.92018 1.44312 1.36039 1.02284 1.50807 1.20555 0.87791 0.97526 0.88747 1.22159 1.00681 0.95145 0.98487 1.21210 0.96126 0.91036 0.91440 1.60396 1.62566 1.00824 1.07857 1.20455 1.00135 0.85840 0.93121 1.20169 0.86836 1.00790 1.00223 1.27395 1.05916 1.04474 0.99360 1.84330 1.00492 1.43247 1.30270 1.25815 0.97077 1.00483 0.96422 1.18821 0.89110 0.96056 0.93976 1.22241 1.01782 0.97236 0.96051 1.22014 0.90782 0.96970 0.99453 1.22739 1.01221 0.97841 0.95368 1.23318 0.95364 0.93129 0.95468 1.67647 0.99122 1.23014 1.30699 1.66269 1.25507 1.09118 1.15873 1.21813 0.97491 0.98383 0.96685 1.21041 0.97225 0.86006 0.94027 0.94013 0.98166 0.92607 0.90942 0.93259 0.93992 0.83682 0.90856 0.91464 0.77398 0.82714 0.80154 0.80629 0.80727 0.93581 0.91620 0.96572 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 11.19 21.65 0.24 -56.16 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 3 Si 0.97 46.34 29.59 68.60 2.03 48.37 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.26 -15.30 9.58 84.03 0.81 -14.49 16 8 H 0.06 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -32.41 2.99 -699.08 -2.09 -34.50 16 10 C 0.18 8.98 5.30 86.36 0.46 9.44 16 11 C -0.13 -4.90 5.36 30.68 0.16 -4.74 16 12 C 0.11 3.87 2.46 44.94 0.11 3.98 16 13 N -0.68 -20.67 6.30 -495.42 -3.12 -23.79 16 14 C 0.14 3.59 5.89 85.56 0.50 4.09 16 15 C 0.05 1.37 6.20 41.66 0.26 1.63 16 16 C -0.23 -4.28 11.07 66.82 0.74 -3.54 16 17 S 0.16 2.63 22.37 -56.49 -1.26 1.37 16 18 C 0.08 1.94 7.42 87.47 0.65 2.59 16 19 C 0.16 3.66 6.75 41.85 0.28 3.94 16 20 C -0.15 -2.10 9.64 22.61 0.22 -1.88 16 21 C -0.07 -0.57 10.16 22.44 0.23 -0.34 16 22 C -0.15 -1.42 10.11 22.42 0.23 -1.19 16 23 C 0.09 1.45 11.17 84.72 0.95 2.39 16 24 N -0.49 -12.81 10.26 -185.07 -1.90 -14.71 16 25 N -0.45 -13.82 10.48 -177.82 -1.86 -15.68 16 26 C -0.10 -4.01 5.59 30.67 0.17 -3.84 16 27 C 0.14 6.41 6.52 86.37 0.56 6.98 16 28 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 29 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 30 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 31 H 0.07 2.42 8.10 -2.39 -0.02 2.40 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.44 7.80 -2.39 -0.02 1.42 16 34 H 0.34 9.37 8.32 -89.69 -0.75 8.62 16 35 H 0.07 2.18 7.41 -2.38 -0.02 2.16 16 36 H 0.07 1.46 8.00 -2.39 -0.02 1.44 16 37 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.16 1.38 7.29 -2.91 -0.02 1.36 16 39 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.29 7.42 -2.39 -0.02 2.28 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -77.16 381.98 -0.96 -78.12 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.26 Total: 14.47 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.74 Total: 2.52 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -8.73 Total: -144.85 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.26 Total: 1.37 kcal Total: -77.16 -0.96 -78.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.853 kcal (2) G-P(sol) polarization free energy of solvation -77.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds