Wall clock time and date at job start Wed Apr 1 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99781 * 2 1 4 4 H 1.48501 * 109.47171 * 270.00150 * 3 2 1 5 5 H 1.48507 * 109.46961 * 29.99786 * 3 2 1 6 6 H 1.48495 * 109.47103 * 149.99658 * 3 2 1 7 7 C 1.37871 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00686 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99634 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00047 * 269.99458 * 10 9 7 12 12 C 1.50701 * 109.47280 * 269.99964 * 11 10 9 13 13 C 1.34522 * 125.78469 * 89.99929 * 12 11 10 14 14 C 1.41385 * 106.83774 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.83983 * 0.02562 * 14 13 12 16 16 O 1.34292 * 125.79428 * 269.69122 * 12 11 10 17 17 C 1.34776 * 120.00452 * 90.00050 * 10 9 7 18 18 O 1.21278 * 120.00497 * 180.02562 * 17 10 9 19 19 C 1.50707 * 119.99636 * 359.97438 * 17 10 9 20 20 C 1.52999 * 109.46862 * 180.02562 * 19 17 10 21 21 C 1.52999 * 109.46816 * 180.02562 * 20 19 17 22 22 N 1.46507 * 109.47241 * 180.02562 * 21 20 19 23 23 C 1.35763 * 119.62574 * 90.00014 * 22 21 20 24 24 C 1.35346 * 120.69997 * 180.27933 * 23 22 21 25 25 C 1.40202 * 119.94860 * 359.43664 * 24 23 22 26 26 C 1.36395 * 119.26120 * 0.57668 * 25 24 23 27 27 C 1.34664 * 119.61981 * 270.02413 * 22 21 20 28 28 O 1.22055 * 119.98569 * 359.97438 * 27 22 21 29 29 H 0.96996 * 120.00414 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47923 * 59.99747 * 9 7 2 31 31 H 1.09002 * 109.47128 * 299.99367 * 9 7 2 32 32 H 1.09002 * 109.47160 * 30.00186 * 11 10 9 33 33 H 1.09004 * 109.47356 * 150.00079 * 11 10 9 34 34 H 1.07996 * 126.58092 * 0.03356 * 13 12 11 35 35 H 1.07993 * 126.57727 * 179.97438 * 14 13 12 36 36 H 1.07996 * 125.79027 * 180.02562 * 15 14 13 37 37 H 1.08998 * 109.46925 * 60.00402 * 19 17 10 38 38 H 1.09001 * 109.47148 * 300.00322 * 19 17 10 39 39 H 1.09004 * 109.46770 * 60.00629 * 20 19 17 40 40 H 1.08991 * 109.47766 * 300.00411 * 20 19 17 41 41 H 1.08991 * 109.47264 * 60.00501 * 21 20 19 42 42 H 1.09001 * 109.47142 * 300.00136 * 21 20 19 43 43 H 1.08002 * 119.64669 * 359.97438 * 23 22 21 44 44 H 1.07996 * 120.02410 * 179.69320 * 24 23 22 45 45 H 1.08002 * 120.36615 * 180.31976 * 25 24 23 46 46 H 1.08002 * 120.34395 * 179.74309 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 2.6791 -4.1694 -1.2682 12 6 1.7625 -5.2837 -1.7031 13 6 0.6698 -5.1470 -2.4758 14 6 0.1151 -6.4380 -2.6327 15 6 0.9017 -7.2862 -1.9461 16 8 1.9011 -6.5822 -1.3900 17 6 2.6412 -4.1248 1.1677 18 8 3.4297 -5.0463 1.1677 19 6 2.1519 -3.5517 2.4728 20 6 2.7985 -4.3071 3.6357 21 6 2.3013 -3.7257 4.9607 22 7 2.9208 -4.4486 6.0743 23 6 4.1010 -4.0121 6.5840 24 6 4.6953 -4.6666 7.6088 25 6 4.0854 -5.8011 8.1624 26 6 2.8999 -6.2383 7.6487 27 6 2.3133 -5.5387 6.5803 28 8 1.2525 -5.9188 6.1113 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8895 31 1 0.6242 -2.5567 0.8904 32 1 2.6868 -3.3877 -2.0279 33 1 3.6886 -4.5593 -1.1379 34 1 0.2898 -4.2278 -2.8964 35 1 -0.7706 -6.6939 -3.1951 36 1 0.7571 -8.3530 -1.8609 37 1 1.0682 -3.6535 2.5308 38 1 2.4215 -2.4971 2.5304 39 1 3.8821 -4.2049 3.5775 40 1 2.5294 -5.3617 3.5784 41 1 1.2177 -3.8282 5.0187 42 1 2.5701 -2.6710 5.0183 43 1 4.5730 -3.1362 6.1639 44 1 5.6366 -4.3127 8.0026 45 1 4.5511 -6.3254 8.9837 46 1 2.4168 -7.1127 8.0590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735040280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:27 Heat of formation + Delta-G solvation = -44.248689 kcal Electronic energy + Delta-G solvation = -29560.942196 eV Core-core repulsion = 25417.080944 eV Total energy + Delta-G solvation = -4143.861252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49160 -42.29660 -40.79969 -37.96166 -37.04658 -36.44718 -34.70570 -33.93098 -33.76994 -31.82132 -30.76816 -29.15449 -28.72955 -26.68721 -25.06985 -24.70357 -24.00009 -22.66754 -22.60605 -21.54144 -20.08011 -18.80755 -18.57112 -18.26854 -18.12776 -17.77055 -17.42845 -17.19109 -16.70723 -16.62057 -16.47649 -16.20231 -15.71999 -15.45582 -15.11628 -14.85419 -14.50132 -14.26332 -13.89287 -13.84104 -13.74047 -13.60983 -13.43387 -13.28198 -13.06869 -12.95301 -12.86964 -12.71446 -12.63402 -12.55632 -12.43153 -12.02864 -11.85895 -11.71424 -11.08967 -10.97986 -10.91832 -10.80435 -10.56110 -9.68635 -9.42577 -8.94326 -8.17709 -6.32904 -0.03929 0.70708 0.95141 1.46007 1.48813 1.57393 1.60862 1.65975 1.70749 2.15986 2.38306 2.49399 2.72354 3.13715 3.58747 3.65811 3.79754 3.82117 3.97260 4.02852 4.05387 4.13178 4.17839 4.25430 4.29642 4.38571 4.44291 4.53123 4.54870 4.58075 4.69550 4.84051 4.89664 4.98697 5.00122 5.08665 5.16943 5.17501 5.23333 5.24526 5.41588 5.58697 5.64164 5.70581 5.77512 6.05814 6.14846 6.21645 6.50838 6.80455 7.01956 7.23617 7.40899 8.88448 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007533 B = 0.003461 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.864067 B = 8088.791352 C =10917.264912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.254 3.746 10 N -0.595 5.595 11 C 0.195 3.805 12 C -0.045 4.045 13 C -0.206 4.206 14 C -0.223 4.223 15 C -0.047 4.047 16 O -0.193 6.193 17 C 0.512 3.488 18 O -0.590 6.590 19 C -0.123 4.123 20 C -0.097 4.097 21 C 0.092 3.908 22 N -0.493 5.493 23 C 0.128 3.872 24 C -0.232 4.232 25 C 0.008 3.992 26 C -0.285 4.285 27 C 0.488 3.512 28 O -0.616 6.616 29 H 0.267 0.733 30 H 0.020 0.980 31 H 0.030 0.970 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.199 0.801 44 H 0.184 0.816 45 H 0.170 0.830 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -6.351 9.804 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.133 3.867 10 N -0.325 5.325 11 C 0.072 3.928 12 C -0.096 4.096 13 C -0.226 4.226 14 C -0.242 4.242 15 C -0.114 4.114 16 O -0.089 6.089 17 C 0.302 3.698 18 O -0.472 6.472 19 C -0.163 4.163 20 C -0.136 4.136 21 C -0.029 4.029 22 N -0.202 5.202 23 C 0.002 3.998 24 C -0.253 4.253 25 C -0.014 4.014 26 C -0.307 4.307 27 C 0.293 3.707 28 O -0.504 6.504 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.151 0.849 43 H 0.215 0.785 44 H 0.201 0.799 45 H 0.187 0.813 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.350 -6.999 9.654 14.557 hybrid contribution -0.519 0.740 -0.583 1.076 sum 7.831 -6.260 9.071 13.520 Atomic orbital electron populations 1.70027 1.07404 1.28215 1.50266 1.25639 0.95430 1.02272 0.94262 0.85557 0.78824 0.79065 0.78241 1.20475 1.20964 1.18816 1.21643 0.93541 0.90996 1.52117 0.92103 1.19142 0.87340 0.82584 0.97596 1.48301 1.45435 1.34193 1.04535 1.19724 0.95153 0.90791 0.87133 1.23139 1.01231 0.83192 1.02035 1.21902 0.96993 1.00015 1.03672 1.22160 1.03888 0.92160 1.05947 1.24861 0.88508 0.99554 0.98516 1.84080 1.45488 1.18933 1.60437 1.21010 0.80296 0.81780 0.86737 1.90597 1.37225 1.31033 1.88323 1.21464 1.01898 1.02499 0.90406 1.21433 1.01166 0.98783 0.92197 1.22072 0.99676 0.97557 0.83608 1.45629 1.20330 1.24847 1.29345 1.22815 0.84018 0.99237 0.93752 1.21209 1.04618 0.99135 1.00387 1.21888 0.91094 0.92798 0.95612 1.22114 1.01501 1.05601 1.01483 1.17772 0.85781 0.81309 0.85832 1.90921 1.25434 1.68788 1.65274 0.92369 0.96179 0.95248 0.86267 0.89676 0.83147 0.80850 0.74668 0.89329 0.86575 0.90286 0.94243 0.89997 0.84945 0.78454 0.79863 0.81259 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.68 13.29 21.45 0.28 -48.40 16 2 C 0.02 1.22 5.46 84.65 0.46 1.68 16 3 Si 0.96 39.12 29.54 68.60 2.03 41.14 16 4 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.54 -26.42 9.28 25.60 0.24 -26.18 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.25 11.73 4.97 85.63 0.43 12.15 16 10 N -0.59 -25.07 2.44 -830.49 -2.03 -27.09 16 11 C 0.20 7.48 5.93 85.63 0.51 7.99 16 12 C -0.04 -1.69 6.90 24.84 0.17 -1.52 16 13 C -0.21 -7.04 10.81 22.19 0.24 -6.80 16 14 C -0.22 -6.40 10.91 22.19 0.24 -6.16 16 15 C -0.05 -1.35 12.09 66.97 0.81 -0.54 16 16 O -0.19 -7.25 10.65 -2.37 -0.03 -7.27 16 17 C 0.51 21.50 7.67 87.66 0.67 22.18 16 18 O -0.59 -27.22 15.56 -3.02 -0.05 -27.27 16 19 C -0.12 -4.32 4.25 29.85 0.13 -4.19 16 20 C -0.10 -3.03 4.83 30.59 0.15 -2.88 16 21 C 0.09 2.35 5.33 86.38 0.46 2.81 16 22 N -0.49 -12.06 2.58 -650.97 -1.68 -13.75 16 23 C 0.13 1.92 10.28 83.42 0.86 2.77 16 24 C -0.23 -2.64 10.01 22.08 0.22 -2.42 16 25 C 0.01 0.11 10.10 22.32 0.23 0.34 16 26 C -0.29 -6.68 9.99 22.40 0.22 -6.46 16 27 C 0.49 15.26 7.41 84.82 0.63 15.89 16 28 O -0.62 -25.56 16.64 -5.49 -0.09 -25.65 16 29 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.03 1.42 6.44 -2.39 -0.02 1.41 16 32 H 0.12 4.23 8.07 -2.39 -0.02 4.21 16 33 H 0.08 3.27 7.42 -2.38 -0.02 3.25 16 34 H 0.15 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.24 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.09 3.20 7.40 -2.39 -0.02 3.18 16 38 H 0.12 3.91 8.00 -2.39 -0.02 3.89 16 39 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 40 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.08 2.45 7.39 -2.39 -0.02 2.44 16 42 H 0.13 2.36 8.01 -2.39 -0.02 2.34 16 43 H 0.20 1.45 8.04 -2.91 -0.02 1.42 16 44 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -76.23 397.75 6.08 -70.15 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.98 Total: 29.48 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.66 Total: 8.65 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -3.42 Total: -89.23 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -0.16 Total: -60.19 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal Total: -76.23 6.08 -70.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735040280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.899 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds