Wall clock time and date at job start Wed Apr 1 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50704 * 126.50284 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47275 * 84.97760 * 8 7 6 10 10 C 1.50696 * 109.47299 * 180.02562 * 9 8 7 11 11 O 1.20830 * 119.99621 * 359.97438 * 10 9 8 12 12 O 1.34226 * 120.00295 * 180.02562 * 10 9 8 13 13 C 1.45193 * 117.00446 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47583 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99547 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99949 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99601 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47105 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00011 * 179.97438 * 18 17 16 21 21 N 1.31523 * 120.00019 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00362 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47007 * 89.99489 * 22 20 18 24 24 H 1.48494 * 109.47502 * 209.99933 * 22 20 18 25 25 H 1.48499 * 109.46891 * 329.99852 * 22 20 18 26 26 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 27 27 N 1.36834 * 109.93838 * 359.97438 * 26 7 6 28 28 H 0.96999 * 125.06376 * 179.97438 * 27 26 7 29 29 C 1.37688 * 109.87351 * 0.02562 * 27 26 7 30 30 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 31 31 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 32 32 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 33 33 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 34 34 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 35 35 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 36 36 H 1.08998 * 109.47382 * 204.98159 * 8 7 6 37 37 H 1.09004 * 109.46880 * 324.98523 * 8 7 6 38 38 H 1.08998 * 109.47242 * 300.00485 * 9 8 7 39 39 H 1.09002 * 109.46482 * 60.00021 * 9 8 7 40 40 H 1.09003 * 109.47555 * 300.00068 * 13 12 10 41 41 H 1.09002 * 109.46985 * 59.99581 * 13 12 10 42 42 H 0.96997 * 120.00521 * 0.02562 * 16 14 13 43 43 H 1.08999 * 109.47412 * 299.99859 * 17 16 14 44 44 H 1.09002 * 109.47331 * 59.99934 * 17 16 14 45 45 H 0.96990 * 120.00124 * 180.02562 * 21 20 18 46 46 H 1.07996 * 125.02834 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0035 9 6 5.9754 -3.1467 1.4411 10 6 7.3944 -3.6539 1.4427 11 8 7.9335 -3.9441 0.4010 12 8 8.0592 -3.7842 2.6015 13 6 9.4223 -4.2790 2.5275 14 6 10.0043 -4.3577 3.9154 15 8 9.3358 -4.0296 4.8727 16 7 11.2671 -4.7937 4.0927 17 6 11.8326 -4.8708 5.4420 18 6 13.2470 -5.3854 5.3653 19 1 13.6814 -5.6301 4.4072 20 6 13.9868 -5.5427 6.5180 21 7 15.2214 -5.9914 6.4510 22 14 13.2359 -5.1188 8.1750 23 1 12.5664 -6.3194 8.7368 24 1 14.3048 -4.6687 9.1024 25 1 12.2395 -4.0313 8.0032 26 6 2.9199 -3.3334 0.0020 27 7 1.8165 -2.5243 0.0018 28 1 0.8976 -2.8351 0.0015 29 6 2.2047 -1.2033 0.0010 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6547 2.1251 -0.0004 34 1 4.1127 2.1482 -0.0101 35 1 5.3715 0.0531 0.0013 36 1 5.4829 -4.0938 -0.4301 37 1 6.0805 -2.4243 -0.5857 38 1 5.9466 -2.1471 1.8747 39 1 5.3490 -3.8165 2.0303 40 1 9.4249 -5.2708 2.0752 41 1 10.0223 -3.6013 1.9202 42 1 11.8016 -5.0565 3.3271 43 1 11.8305 -3.8790 5.8941 44 1 11.2324 -5.5482 6.0495 45 1 15.7417 -6.1024 7.2619 46 1 2.8970 -4.4131 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745135368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:33 Heat of formation + Delta-G solvation = -79.613579 kcal Electronic energy + Delta-G solvation = -27687.762254 eV Core-core repulsion = 23542.367465 eV Total energy + Delta-G solvation = -4145.394789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70326 -40.58481 -38.87192 -37.49649 -36.52012 -34.70283 -34.36636 -32.93201 -32.42835 -30.17614 -29.60428 -28.97787 -27.16151 -27.14088 -24.83679 -22.41569 -22.20544 -22.16783 -20.83420 -20.11057 -19.25926 -18.16324 -17.72533 -17.46042 -16.94270 -16.55183 -16.46447 -15.74192 -15.58616 -15.14498 -15.08663 -14.94829 -14.68502 -14.09780 -14.08294 -13.76142 -13.62156 -13.26166 -13.14545 -12.89938 -12.74245 -12.70503 -12.59347 -12.38110 -12.16238 -12.04892 -11.84896 -11.80467 -11.35317 -11.07025 -11.02889 -10.82383 -10.70733 -10.61527 -10.00116 -9.73247 -9.54159 -9.33125 -8.81706 -8.54286 -8.26384 -7.91829 -6.24166 -4.27230 0.77492 1.32064 2.12707 2.17951 2.52375 2.76689 3.04268 3.25447 3.32326 3.40320 3.56432 3.89877 4.31039 4.34013 4.37166 4.53502 4.63226 4.68726 4.79722 4.84787 4.91629 4.96311 5.10564 5.11113 5.11849 5.18269 5.21418 5.23937 5.24633 5.33201 5.35060 5.51296 5.60783 5.68055 5.83628 5.90559 6.21450 6.30241 6.33320 6.38575 6.45026 6.73627 6.83934 7.01147 7.10167 7.14574 7.31986 7.66212 8.05493 8.41686 8.68555 8.80475 9.34985 10.87613 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.001541 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.399107 B =18169.895595 C =18539.324834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.102 4.102 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.097 4.097 7 C -0.170 4.170 8 C -0.031 4.031 9 C -0.107 4.107 10 C 0.460 3.540 11 O -0.512 6.512 12 O -0.331 6.331 13 C 0.049 3.951 14 C 0.501 3.499 15 O -0.537 6.537 16 N -0.700 5.700 17 C 0.222 3.778 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 C 0.057 3.943 27 N -0.594 5.594 28 H 0.415 0.585 29 C 0.097 3.903 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.399 0.601 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.268 0.732 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.508 10.066 -17.064 36.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.102 4.102 7 C -0.177 4.177 8 C -0.069 4.069 9 C -0.144 4.144 10 C 0.303 3.697 11 O -0.401 6.401 12 O -0.246 6.246 13 C -0.029 4.029 14 C 0.285 3.715 15 O -0.415 6.415 16 N -0.350 5.350 17 C 0.100 3.900 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.069 4.069 27 N -0.197 5.197 28 H 0.251 0.749 29 C -0.009 4.009 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.233 0.767 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -30.726 10.077 -16.527 36.314 hybrid contribution -0.211 -0.242 0.461 0.561 sum -30.936 9.835 -16.066 36.220 Atomic orbital electron populations 1.20688 0.91404 1.02585 1.02067 1.18864 0.95272 0.90263 1.05796 1.20716 0.94211 0.96354 1.00850 1.20635 0.93964 0.97980 1.03546 1.20310 0.99702 0.90534 0.98745 1.19071 0.91782 0.93193 1.06142 1.20116 0.94355 0.90930 1.12313 1.19681 0.90651 1.02368 0.94181 1.21415 0.88624 1.04302 1.00106 1.23911 0.89559 0.74706 0.81483 1.90671 1.69462 1.46751 1.33172 1.86569 1.26931 1.76570 1.34528 1.22803 0.80952 1.01742 0.97367 1.19958 0.82925 0.79095 0.89550 1.90701 1.59979 1.48716 1.42057 1.46066 1.12299 1.64504 1.12153 1.19552 0.94171 0.97248 0.79000 1.21072 0.95510 1.45840 0.95982 0.90117 1.24785 0.94588 0.93949 0.99212 1.69876 1.08867 1.44790 1.29247 0.86817 0.79410 0.79899 0.83581 1.19807 1.20833 1.18462 1.21671 0.85052 0.96352 1.03810 1.41700 1.08492 1.04108 1.65353 0.74856 1.18046 0.93644 0.84572 1.04685 0.91414 0.92479 0.91136 0.85883 0.85969 0.85979 0.90151 0.90108 0.87450 0.87525 0.88350 0.88341 0.76710 0.95426 0.95894 0.92191 0.81147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.02 36.01 0.36 -0.18 16 2 C -0.10 -0.76 5.89 -104.47 -0.62 -1.38 16 3 C -0.10 -0.77 9.67 -39.54 -0.38 -1.15 16 4 C -0.14 -1.14 9.97 -39.95 -0.40 -1.54 16 5 C -0.07 -0.67 10.05 -39.65 -0.40 -1.07 16 6 C -0.10 -0.93 6.35 -105.14 -0.67 -1.60 16 7 C -0.17 -1.42 5.57 -102.71 -0.57 -2.00 16 8 C -0.03 -0.26 5.04 -27.88 -0.14 -0.40 16 9 C -0.11 -0.96 5.79 -27.89 -0.16 -1.13 16 10 C 0.46 5.77 7.96 36.00 0.29 6.06 16 11 O -0.51 -7.30 15.73 -18.75 -0.30 -7.59 16 12 O -0.33 -4.98 9.75 -45.89 -0.45 -5.43 16 13 C 0.05 0.71 5.94 36.01 0.21 0.93 16 14 C 0.50 9.59 7.91 -10.99 -0.09 9.50 16 15 O -0.54 -12.45 16.50 -14.11 -0.23 -12.68 16 16 N -0.70 -13.90 5.55 -61.47 -0.34 -14.24 16 17 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 18 C -0.55 -14.80 9.83 -34.44 -0.34 -15.14 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 22 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 C 0.06 0.37 11.73 -16.73 -0.20 0.18 16 27 N -0.59 -3.74 6.07 -10.65 -0.06 -3.80 16 28 H 0.41 1.43 8.87 -40.82 -0.36 1.07 16 29 C 0.10 0.84 6.95 -83.99 -0.58 0.25 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.23 7.99 -51.93 -0.42 -0.18 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 41 H 0.10 1.26 8.13 -51.93 -0.42 0.83 16 42 H 0.40 6.83 8.32 -40.82 -0.34 6.49 16 43 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 44 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -35.61 397.74 -9.61 -45.23 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.53 Total: 2.62 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.80 Total: -1.19 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.37 Total: -43.50 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.98 Total: -25.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.61 -9.61 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745135368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.388 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds