Wall clock time and date at job start Wed Apr 1 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37708 * 120.16035 * 2 1 4 4 C 1.38841 * 120.82366 * 179.70196 * 3 2 1 5 5 C 1.37803 * 120.56462 * 0.25986 * 4 3 2 6 6 C 1.39298 * 119.51952 * 0.02562 * 5 4 3 7 7 C 1.39603 * 120.15727 * 180.25481 * 2 1 3 8 8 N 1.35662 * 121.65825 * 359.97438 * 7 2 1 9 9 C 1.29835 * 121.61999 * 180.31908 * 8 7 2 10 10 N 1.35856 * 123.37264 * 359.97438 * 9 8 7 11 11 C 1.46496 * 119.69617 * 180.02562 * 10 9 8 12 12 C 1.50709 * 109.47057 * 90.00032 * 11 10 9 13 13 O 1.20832 * 119.99636 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00282 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00066 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47095 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47303 * 300.00167 * 16 15 14 18 18 C 1.53003 * 109.46702 * 59.99899 * 16 15 14 19 19 C 1.50694 * 109.46860 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00435 * 0.02562 * 19 16 15 21 21 C 1.37885 * 119.99797 * 179.97438 * 19 16 15 22 22 N 1.31518 * 119.99616 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 120.00095 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47111 * 90.00426 * 23 21 19 25 25 H 1.48496 * 109.46934 * 210.00785 * 23 21 19 26 26 H 1.48506 * 109.46763 * 330.00384 * 23 21 19 27 27 C 1.35343 * 120.60722 * 0.02562 * 10 9 8 28 28 O 1.21725 * 121.29614 * 180.02562 * 27 10 9 29 29 H 1.09002 * 109.47401 * 89.99108 * 1 2 3 30 30 H 1.08996 * 109.47563 * 209.99438 * 1 2 3 31 31 H 1.09003 * 109.46922 * 330.00075 * 1 2 3 32 32 H 1.08002 * 119.59081 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.71906 * 180.27842 * 4 3 2 34 34 H 1.08006 * 120.24436 * 179.97438 * 5 4 3 35 35 H 1.08000 * 118.31391 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.47266 * 209.99672 * 11 10 9 37 37 H 1.09004 * 109.47442 * 330.00393 * 11 10 9 38 38 H 1.08996 * 109.47111 * 299.99801 * 15 14 12 39 39 H 1.09004 * 109.46828 * 59.99931 * 15 14 12 40 40 H 1.09000 * 109.47217 * 60.00068 * 17 16 15 41 41 H 1.08997 * 109.47320 * 179.97438 * 17 16 15 42 42 H 1.08996 * 109.47016 * 300.00072 * 17 16 15 43 43 H 1.09001 * 109.46775 * 60.00409 * 18 16 15 44 44 H 1.08998 * 109.47043 * 179.97438 * 18 16 15 45 45 H 1.09003 * 109.47343 * 300.00258 * 18 16 15 46 46 H 0.97000 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5871 1.2067 0.0062 5 6 4.3016 0.0284 0.0071 6 6 3.6209 -1.1870 0.0012 7 6 2.2083 -1.2071 -0.0054 8 7 1.5675 -2.4028 -0.0102 9 6 2.2205 -3.5250 -0.0090 10 7 3.5770 -3.6003 -0.0035 11 6 4.2311 -4.9112 -0.0032 12 6 4.4613 -5.3581 -1.4239 13 8 4.1149 -4.6535 -2.3425 14 8 5.0510 -6.5386 -1.6690 15 6 5.2412 -6.9042 -3.0613 16 6 5.9236 -8.2712 -3.1411 17 6 7.2825 -8.2046 -2.4411 18 6 5.0468 -9.3198 -2.4536 19 6 6.1204 -8.6508 -4.5861 20 1 5.7919 -7.9836 -5.3693 21 6 6.7207 -9.8496 -4.9084 22 7 7.1211 -10.6618 -3.9546 23 14 6.9652 -10.3198 -6.6996 24 1 8.2826 -9.8191 -7.1674 25 1 6.9215 -11.7981 -6.8336 26 1 5.8858 -9.7161 -7.5217 27 6 4.3296 -2.4755 0.0017 28 8 5.5457 -2.5283 0.0062 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6548 2.1236 -0.0004 33 1 4.1116 2.1509 0.0107 34 1 5.3815 0.0469 0.0115 35 1 1.6564 -4.4459 -0.0134 36 1 5.1875 -4.8398 0.5147 37 1 3.5948 -5.6346 0.5067 38 1 4.2731 -6.9513 -3.5600 39 1 5.8662 -6.1573 -3.5509 40 1 7.1398 -7.9302 -1.3959 41 1 7.7685 -9.1786 -2.4976 42 1 7.9071 -7.4575 -2.9308 43 1 4.0787 -9.3673 -2.9523 44 1 5.5327 -10.2938 -2.5108 45 1 4.9040 -9.0454 -1.4084 46 1 7.5431 -11.5052 -4.1814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764842969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:11 Heat of formation + Delta-G solvation = -73.741465 kcal Electronic energy + Delta-G solvation = -29608.924243 eV Core-core repulsion = 25463.784088 eV Total energy + Delta-G solvation = -4145.140155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96785 -40.11709 -38.91025 -37.72589 -36.70869 -34.96715 -34.57501 -33.20217 -31.35188 -30.53418 -29.19927 -27.28112 -25.80141 -25.67221 -25.16293 -24.84240 -24.15010 -21.41030 -21.07547 -19.16164 -18.94375 -18.74707 -17.82643 -17.51920 -16.21791 -16.13532 -15.91485 -15.62496 -15.43949 -15.38478 -15.07314 -14.66915 -14.24312 -14.05587 -13.74277 -13.58415 -13.23919 -13.01204 -12.82552 -12.63563 -12.48256 -12.26447 -12.08061 -11.94976 -11.90341 -11.54236 -11.25486 -11.01474 -10.76283 -10.73240 -10.49641 -10.47414 -10.25393 -10.21951 -10.06966 -9.99424 -9.48636 -9.38331 -9.26630 -8.81420 -8.41661 -8.26235 -6.06220 -4.17935 0.25223 0.53697 1.91247 1.96594 2.31960 2.48444 3.06993 3.25533 3.32505 3.36423 3.70639 3.74405 3.93560 4.32584 4.34650 4.40689 4.53007 4.65136 4.85955 4.93067 4.95304 4.98653 5.15302 5.20410 5.27844 5.44822 5.47664 5.73817 5.79801 5.93650 5.96892 6.01782 6.02221 6.11744 6.29198 6.38662 6.50228 6.65720 6.91524 6.93092 7.06481 7.09308 7.33947 7.41597 7.56898 7.57002 7.65996 7.96690 8.00354 8.13497 8.33836 8.81739 9.47809 10.94994 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023116 B = 0.002149 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.005495 B =13025.066027 C =13089.593547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.078 4.078 3 C -0.080 4.080 4 C -0.136 4.136 5 C -0.047 4.047 6 C -0.187 4.187 7 C 0.152 3.848 8 N -0.520 5.520 9 C 0.386 3.614 10 N -0.534 5.534 11 C 0.101 3.899 12 C 0.440 3.560 13 O -0.508 6.508 14 O -0.342 6.342 15 C 0.086 3.914 16 C 0.070 3.930 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.513 4.513 20 H 0.056 0.944 21 C 0.069 3.931 22 N -0.882 5.882 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.553 3.447 28 O -0.503 6.503 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.202 0.798 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 18.338 13.097 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.154 4.154 5 C -0.066 4.066 6 C -0.193 4.193 7 C 0.043 3.957 8 N -0.239 5.239 9 C 0.099 3.901 10 N -0.258 5.258 11 C -0.023 4.023 12 C 0.281 3.719 13 O -0.397 6.397 14 O -0.257 6.257 15 C 0.013 3.987 16 C 0.070 3.930 17 C -0.188 4.188 18 C -0.187 4.187 19 C -0.551 4.551 20 H 0.075 0.925 21 C -0.133 4.133 22 N -0.520 5.520 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C 0.346 3.654 28 O -0.376 6.376 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.219 0.781 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.103 0.897 45 H 0.036 0.964 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.766 18.517 12.804 25.402 hybrid contribution 1.053 -0.286 -1.335 1.724 sum -10.713 18.231 11.469 24.056 Atomic orbital electron populations 1.20647 0.89722 1.03052 1.02662 1.19644 0.96857 0.90401 1.01059 1.21194 0.94217 0.97528 0.96942 1.21157 0.94046 0.98078 1.02110 1.21018 1.00696 0.90400 0.94513 1.20513 0.93876 0.93712 1.11190 1.18616 0.88986 0.91959 0.96099 1.68605 1.35508 0.96410 1.23411 1.24800 0.79862 0.98723 0.86683 1.46289 1.07960 1.08113 1.63398 1.21352 1.03593 0.83508 0.93844 1.23537 0.75632 0.80953 0.91816 1.90692 1.48044 1.54570 1.46408 1.86502 1.70122 1.34287 1.34773 1.23769 1.00418 0.99642 0.74832 1.18268 0.92097 0.86630 0.96031 1.21780 0.98498 1.02704 0.95836 1.21776 0.98110 1.03067 0.95762 1.20916 1.39925 1.03936 0.90329 0.92528 1.24857 0.94978 0.96063 0.97434 1.69825 1.40155 1.10620 1.31355 0.86529 0.78630 0.77592 0.84883 1.20612 1.21100 1.19907 1.18429 0.87122 0.83721 0.76121 1.90891 1.12241 1.86357 1.48124 0.91054 0.90250 0.91748 0.84953 0.84927 0.84461 0.78143 0.84212 0.84246 0.92328 0.92431 0.96403 0.89649 0.95793 0.95786 0.89658 0.96419 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.81 36.00 0.35 -0.44 16 2 C -0.08 -0.77 5.91 -104.31 -0.62 -1.39 16 3 C -0.08 -0.65 9.66 -39.55 -0.38 -1.03 16 4 C -0.14 -1.17 10.02 -39.52 -0.40 -1.56 16 5 C -0.05 -0.53 9.68 -39.35 -0.38 -0.91 16 6 C -0.19 -2.47 5.89 -104.78 -0.62 -3.09 16 7 C 0.15 1.85 6.60 -84.51 -0.56 1.29 16 8 N -0.52 -5.92 9.48 -12.01 -0.11 -6.03 16 9 C 0.39 3.83 11.40 -90.18 -1.03 2.81 16 10 N -0.53 -6.40 2.09 -120.15 -0.25 -6.65 16 11 C 0.10 1.10 5.96 -5.19 -0.03 1.07 16 12 C 0.44 7.17 8.02 36.01 0.29 7.46 16 13 O -0.51 -9.96 16.18 -18.75 -0.30 -10.27 16 14 O -0.34 -6.36 8.88 -39.24 -0.35 -6.71 16 15 C 0.09 1.86 4.26 37.16 0.16 2.02 16 16 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 17 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 18 C -0.13 -2.99 8.11 37.16 0.30 -2.69 16 19 C -0.51 -13.55 8.01 -34.44 -0.28 -13.83 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 22 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 23 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.55 8.09 7.66 -12.43 -0.10 7.99 16 28 O -0.50 -8.66 16.32 5.17 0.08 -8.58 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.65 7.58 -51.93 -0.39 0.25 16 31 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.14 1.49 7.83 -52.48 -0.41 1.08 16 35 H 0.20 1.11 7.99 -52.49 -0.42 0.69 16 36 H 0.14 1.48 7.46 -51.93 -0.39 1.10 16 37 H 0.14 0.83 7.99 -51.93 -0.41 0.42 16 38 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 40 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 41 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 45 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -33.36 385.28 -9.16 -42.52 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.37 Total: -0.86 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.16 Total: -1.80 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.15 Total: -35.79 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.57 Total: -25.56 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.36 -9.16 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764842969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.222 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds