Wall clock time and date at job start Wed Apr 1 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30831 * 125.89984 * 2 1 4 4 N 1.40088 * 108.20759 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04299 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92169 * 359.75355 * 4 3 2 7 7 C 1.50695 * 126.12601 * 180.24036 * 6 4 3 8 8 C 1.35312 * 107.74344 * 0.39511 * 6 4 3 9 9 C 1.50701 * 126.03701 * 179.87129 * 8 6 4 10 10 C 1.52996 * 109.47387 * 269.71428 * 9 8 6 11 11 O 1.45198 * 109.47606 * 180.02562 * 10 9 8 12 12 C 1.34230 * 117.00513 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99471 * 359.97438 * 12 11 10 14 14 C 1.50691 * 120.00260 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47293 * 179.97438 * 14 12 11 16 16 C 1.38315 * 119.96804 * 269.72423 * 15 14 12 17 17 C 1.38286 * 120.14046 * 179.76686 * 16 15 14 18 18 C 1.38119 * 120.06404 * 0.50761 * 17 16 15 19 19 C 1.38853 * 119.93264 * 359.74303 * 18 17 16 20 20 O 1.35756 * 120.07111 * 179.97438 * 19 18 17 21 21 C 1.34835 * 116.99552 * 354.48995 * 20 19 18 22 22 H 1.07994 * 120.00292 * 5.06004 * 21 20 19 23 23 C 1.38658 * 119.99589 * 185.05424 * 21 20 19 24 24 N 1.31558 * 120.00177 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47224 * 90.00602 * 25 23 21 27 27 H 1.48506 * 109.46756 * 210.00346 * 25 23 21 28 28 H 1.48496 * 109.47640 * 330.00117 * 25 23 21 29 29 C 1.38085 * 119.96187 * 89.99635 * 15 14 12 30 30 H 1.09002 * 109.47222 * 270.02725 * 1 2 3 31 31 H 1.09003 * 109.47175 * 30.02894 * 1 2 3 32 32 H 1.09001 * 109.47505 * 150.02496 * 1 2 3 33 33 H 1.09003 * 109.47070 * 270.18073 * 7 6 4 34 34 H 1.08998 * 109.47546 * 30.17750 * 7 6 4 35 35 H 1.09004 * 109.47225 * 150.18291 * 7 6 4 36 36 H 1.09000 * 109.47375 * 149.70982 * 9 8 6 37 37 H 1.09003 * 109.47301 * 29.71315 * 9 8 6 38 38 H 1.09003 * 109.46808 * 300.00189 * 10 9 8 39 39 H 1.09000 * 109.47227 * 59.99463 * 10 9 8 40 40 H 1.09003 * 109.46880 * 299.99346 * 14 12 11 41 41 H 1.09005 * 109.47541 * 59.99231 * 14 12 11 42 42 H 1.08003 * 119.93109 * 359.97438 * 16 15 14 43 43 H 1.07997 * 119.96783 * 180.25182 * 17 16 15 44 44 H 1.08004 * 120.03679 * 179.77019 * 18 17 16 45 45 H 0.97000 * 120.00085 * 179.97438 * 24 23 21 46 46 H 1.07997 * 120.03601 * 359.96208 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2078 0.0011 6 6 3.6141 -0.7155 0.0065 7 6 4.8349 -1.5990 0.0143 8 6 2.3271 -1.1330 0.0006 9 6 1.8598 -2.5658 0.0013 10 6 1.7024 -3.0516 -1.4409 11 8 1.2516 -4.4318 -1.4403 12 6 1.0637 -5.0122 -2.6360 13 8 1.2687 -4.3873 -3.6496 14 6 0.5960 -6.4425 -2.7141 15 6 0.4644 -6.8498 -4.1591 16 6 -0.7365 -6.6694 -4.8212 17 6 -0.8598 -7.0373 -6.1485 18 6 0.2136 -7.5962 -6.8141 19 6 1.4190 -7.7834 -6.1508 20 8 2.4757 -8.3329 -6.8022 21 6 2.2571 -8.7797 -8.0555 22 1 1.2989 -8.6185 -8.5268 23 6 3.2627 -9.4460 -8.7391 24 7 4.4299 -9.6427 -8.1649 25 14 2.9596 -10.0656 -10.4751 26 1 3.3370 -9.0110 -11.4501 27 1 3.7795 -11.2799 -10.7174 28 1 1.5217 -10.3986 -10.6380 29 6 1.5413 -7.4080 -4.8191 30 1 -0.3634 0.0005 1.0277 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3634 -0.8902 -0.5134 33 1 5.1344 -1.8139 -1.0115 34 1 5.6484 -1.0902 0.5313 35 1 4.6048 -2.5321 0.5286 36 1 0.9008 -2.6350 0.5148 37 1 2.5930 -3.1868 0.5159 38 1 0.9692 -2.4305 -1.9555 39 1 2.6614 -2.9824 -1.9543 40 1 1.3202 -7.0892 -2.2186 41 1 -0.3716 -6.5360 -2.2211 42 1 -1.5788 -6.2370 -4.3014 43 1 -1.7976 -6.8914 -6.6638 44 1 0.1157 -7.8869 -7.8497 45 1 5.1332 -10.1092 -8.6430 46 1 2.4776 -7.5521 -4.3005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788202928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:57 Heat of formation + Delta-G solvation = -31.313567 kcal Electronic energy + Delta-G solvation = -28280.910767 eV Core-core repulsion = 24137.610424 eV Total energy + Delta-G solvation = -4143.300343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73978 -40.34769 -38.95057 -36.95678 -36.15949 -34.07716 -33.67656 -32.43424 -32.04850 -30.24789 -29.23494 -28.19221 -27.54663 -26.81330 -25.25514 -23.54257 -21.81795 -21.45936 -20.52846 -20.30987 -19.57728 -17.75045 -17.65973 -17.37395 -16.97065 -16.54662 -16.15529 -15.37437 -15.12829 -14.84249 -14.44646 -14.39497 -14.00609 -13.84475 -13.67907 -13.58107 -13.41613 -13.27756 -13.17079 -12.76218 -12.73525 -12.62669 -12.44876 -12.29900 -12.01052 -11.81099 -11.70610 -11.51467 -11.26852 -10.86821 -10.84281 -10.79329 -10.62611 -10.47184 -10.43625 -10.24684 -9.58588 -9.33036 -8.82293 -8.75554 -8.09701 -7.21865 -6.42554 -4.01574 1.48152 1.97961 2.28607 2.38695 2.43371 2.48932 2.96417 3.15012 3.15212 3.19933 3.98343 4.24304 4.31033 4.55073 4.61753 4.74049 4.85342 4.92457 4.98555 5.01938 5.07241 5.12054 5.15631 5.21366 5.30203 5.33958 5.41033 5.42769 5.51162 5.62888 5.65665 5.69412 5.74630 5.79987 5.91977 5.93440 6.17352 6.32793 6.33657 6.52540 6.67298 6.91405 6.92635 7.07905 7.24487 7.34744 7.37056 7.44524 7.81678 7.96568 8.02359 9.03165 9.73488 10.75622 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.001883 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.525746 B =14868.403778 C =15779.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.089 3.911 3 N -0.296 5.296 4 N -0.476 5.476 5 H 0.438 0.562 6 C 0.100 3.900 7 C -0.099 4.099 8 C -0.238 4.238 9 C -0.035 4.035 10 C 0.071 3.929 11 O -0.364 6.364 12 C 0.459 3.541 13 O -0.490 6.490 14 C -0.064 4.064 15 C -0.043 4.043 16 C -0.195 4.195 17 C -0.075 4.075 18 C -0.228 4.228 19 C 0.154 3.846 20 O -0.179 6.179 21 C -0.391 4.391 22 H 0.092 0.908 23 C 0.038 3.962 24 N -0.864 5.864 25 Si 0.941 3.059 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.267 1.267 29 C -0.172 4.172 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.269 0.731 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 14.543 19.087 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 N -0.119 5.119 4 N -0.184 5.184 5 H 0.282 0.718 6 C -0.029 4.029 7 C -0.157 4.157 8 C -0.250 4.250 9 C -0.074 4.074 10 C -0.003 4.003 11 O -0.282 6.282 12 C 0.301 3.699 13 O -0.375 6.375 14 C -0.102 4.102 15 C -0.044 4.044 16 C -0.214 4.214 17 C -0.093 4.093 18 C -0.247 4.247 19 C 0.100 3.900 20 O -0.082 6.082 21 C -0.467 4.467 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.499 5.499 25 Si 0.766 3.234 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.192 1.192 29 C -0.192 4.192 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.079 0.921 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.045 15.890 18.776 24.928 hybrid contribution 0.401 -0.564 -1.091 1.291 sum -3.644 15.326 17.685 23.684 Atomic orbital electron populations 1.20241 0.86546 1.03675 1.03178 1.22275 0.97063 0.90093 0.98409 1.77307 0.86448 1.22292 1.25891 1.46167 1.07393 1.04832 1.60017 0.71766 1.20964 0.97030 0.85007 0.99899 1.20558 0.92680 0.98497 1.04006 1.19421 0.91279 0.95527 1.18740 1.19713 1.02684 0.90226 0.94773 1.23021 1.00250 0.79020 0.97972 1.86455 1.78714 1.28915 1.34095 1.23811 0.74767 0.90159 0.81127 1.90725 1.45885 1.64699 1.36186 1.20260 1.04140 0.89144 0.96620 1.18676 0.94059 0.99017 0.92633 1.20378 0.96991 1.08493 0.95505 1.20692 0.97458 0.97053 0.94083 1.21202 0.93913 1.08188 1.01390 1.19268 0.87527 0.91899 0.91289 1.83980 1.29981 1.66193 1.28078 1.21320 1.01023 1.36380 0.87997 0.89090 1.25283 0.94739 0.96493 1.00044 1.70040 1.03237 1.39089 1.37520 0.85714 0.78706 0.78487 0.80531 1.19918 1.20281 1.19199 1.19969 0.98773 1.07478 0.92947 0.90242 0.90701 0.90171 0.89635 0.90878 0.89120 0.89957 0.90191 0.91367 0.91430 0.87069 0.87182 0.87716 0.87336 0.85526 0.92077 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.12 36.00 0.36 -0.21 16 2 C 0.09 0.89 7.22 -82.41 -0.59 0.29 16 3 N -0.30 -3.27 12.70 33.67 0.43 -2.84 16 4 N -0.48 -4.05 7.36 33.48 0.25 -3.81 16 5 H 0.44 2.37 8.96 -182.61 -1.64 0.73 16 6 C 0.10 0.83 7.21 -82.26 -0.59 0.23 16 7 C -0.10 -0.53 10.22 36.00 0.37 -0.17 16 8 C -0.24 -2.21 5.35 -105.05 -0.56 -2.78 16 9 C -0.04 -0.30 5.54 -27.88 -0.15 -0.45 16 10 C 0.07 0.78 5.45 37.16 0.20 0.99 16 11 O -0.36 -4.48 10.22 -39.26 -0.40 -4.89 16 12 C 0.46 6.85 7.95 36.00 0.29 7.14 16 13 O -0.49 -9.31 15.78 -18.75 -0.30 -9.61 16 14 C -0.06 -0.86 5.94 -29.04 -0.17 -1.03 16 15 C -0.04 -0.78 4.37 -104.65 -0.46 -1.24 16 16 C -0.19 -3.45 9.70 -39.54 -0.38 -3.83 16 17 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 18 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 19 C 0.15 3.80 6.65 -39.11 -0.26 3.54 16 20 O -0.18 -5.18 9.76 0.02 0.00 -5.18 16 21 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 22 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 24 N -0.86 -25.52 13.67 55.48 0.76 -24.77 16 25 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 29 C -0.17 -3.72 9.65 -39.39 -0.38 -4.10 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.43 7.14 -51.93 -0.37 0.06 16 36 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 37 H 0.08 0.58 7.14 -51.93 -0.37 0.21 16 38 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 40 H 0.11 1.26 8.08 -51.93 -0.42 0.85 16 41 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 42 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -35.99 397.31 -8.75 -44.74 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.55 Total: 3.31 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.90 Total: -18.65 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 1.43 Total: -31.41 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.70 Total: -19.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.99 -8.75 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788202928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.424 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds