Wall clock time and date at job start Wed Apr 1 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30831 * 125.89984 * 2 1 4 4 N 1.40088 * 108.20759 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04299 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92169 * 359.75355 * 4 3 2 7 7 C 1.50695 * 126.12601 * 180.24036 * 6 4 3 8 8 C 1.35312 * 107.74344 * 0.39511 * 6 4 3 9 9 C 1.50701 * 126.03701 * 179.87129 * 8 6 4 10 10 C 1.52996 * 109.47387 * 269.71428 * 9 8 6 11 11 O 1.45198 * 109.47606 * 180.02562 * 10 9 8 12 12 C 1.34230 * 117.00513 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99471 * 359.97438 * 12 11 10 14 14 C 1.50691 * 120.00260 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47293 * 179.97438 * 14 12 11 16 16 C 1.38315 * 119.96804 * 269.72423 * 15 14 12 17 17 C 1.38286 * 120.14046 * 179.76686 * 16 15 14 18 18 C 1.38119 * 120.06404 * 0.50761 * 17 16 15 19 19 C 1.38853 * 119.93264 * 359.74303 * 18 17 16 20 20 O 1.35756 * 120.07111 * 179.97438 * 19 18 17 21 21 C 1.34835 * 116.99552 * 354.48995 * 20 19 18 22 22 H 1.07994 * 120.00292 * 5.06004 * 21 20 19 23 23 C 1.38658 * 119.99589 * 185.05424 * 21 20 19 24 24 N 1.31558 * 120.00177 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47224 * 90.00602 * 25 23 21 27 27 H 1.48506 * 109.46756 * 210.00346 * 25 23 21 28 28 H 1.48496 * 109.47640 * 330.00117 * 25 23 21 29 29 C 1.38085 * 119.96187 * 89.99635 * 15 14 12 30 30 H 1.09002 * 109.47222 * 270.02725 * 1 2 3 31 31 H 1.09003 * 109.47175 * 30.02894 * 1 2 3 32 32 H 1.09001 * 109.47505 * 150.02496 * 1 2 3 33 33 H 1.09003 * 109.47070 * 270.18073 * 7 6 4 34 34 H 1.08998 * 109.47546 * 30.17750 * 7 6 4 35 35 H 1.09004 * 109.47225 * 150.18291 * 7 6 4 36 36 H 1.09000 * 109.47375 * 149.70982 * 9 8 6 37 37 H 1.09003 * 109.47301 * 29.71315 * 9 8 6 38 38 H 1.09003 * 109.46808 * 300.00189 * 10 9 8 39 39 H 1.09000 * 109.47227 * 59.99463 * 10 9 8 40 40 H 1.09003 * 109.46880 * 299.99346 * 14 12 11 41 41 H 1.09005 * 109.47541 * 59.99231 * 14 12 11 42 42 H 1.08003 * 119.93109 * 359.97438 * 16 15 14 43 43 H 1.07997 * 119.96783 * 180.25182 * 17 16 15 44 44 H 1.08004 * 120.03679 * 179.77019 * 18 17 16 45 45 H 0.97000 * 120.00085 * 179.97438 * 24 23 21 46 46 H 1.07997 * 120.03601 * 359.96208 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2078 0.0011 6 6 3.6141 -0.7155 0.0065 7 6 4.8349 -1.5990 0.0143 8 6 2.3271 -1.1330 0.0006 9 6 1.8598 -2.5658 0.0013 10 6 1.7024 -3.0516 -1.4409 11 8 1.2516 -4.4318 -1.4403 12 6 1.0637 -5.0122 -2.6360 13 8 1.2687 -4.3873 -3.6496 14 6 0.5960 -6.4425 -2.7141 15 6 0.4644 -6.8498 -4.1591 16 6 -0.7365 -6.6694 -4.8212 17 6 -0.8598 -7.0373 -6.1485 18 6 0.2136 -7.5962 -6.8141 19 6 1.4190 -7.7834 -6.1508 20 8 2.4757 -8.3329 -6.8022 21 6 2.2571 -8.7797 -8.0555 22 1 1.2989 -8.6185 -8.5268 23 6 3.2627 -9.4460 -8.7391 24 7 4.4299 -9.6427 -8.1649 25 14 2.9596 -10.0656 -10.4751 26 1 3.3370 -9.0110 -11.4501 27 1 3.7795 -11.2799 -10.7174 28 1 1.5217 -10.3986 -10.6380 29 6 1.5413 -7.4080 -4.8191 30 1 -0.3634 0.0005 1.0277 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3634 -0.8902 -0.5134 33 1 5.1344 -1.8139 -1.0115 34 1 5.6484 -1.0902 0.5313 35 1 4.6048 -2.5321 0.5286 36 1 0.9008 -2.6350 0.5148 37 1 2.5930 -3.1868 0.5159 38 1 0.9692 -2.4305 -1.9555 39 1 2.6614 -2.9824 -1.9543 40 1 1.3202 -7.0892 -2.2186 41 1 -0.3716 -6.5360 -2.2211 42 1 -1.5788 -6.2370 -4.3014 43 1 -1.7976 -6.8914 -6.6638 44 1 0.1157 -7.8869 -7.8497 45 1 5.1332 -10.1092 -8.6430 46 1 2.4776 -7.5521 -4.3005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788202928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:56 Heat of formation + Delta-G solvation = -53.552293 kcal Electronic energy + Delta-G solvation = -28281.875110 eV Core-core repulsion = 24137.610424 eV Total energy + Delta-G solvation = -4144.264687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.40459 -41.54648 -40.64202 -38.48147 -37.50783 -34.82143 -34.34919 -34.29435 -33.54773 -31.04803 -30.78689 -29.02941 -28.58695 -27.65458 -27.22395 -24.43399 -23.31373 -22.94206 -21.71163 -21.16211 -20.28281 -19.48367 -18.78279 -18.69174 -18.22068 -17.60957 -17.23224 -16.72541 -16.38291 -16.13380 -16.06706 -15.49750 -15.47098 -15.09030 -14.70911 -14.47324 -14.35999 -14.19403 -14.15784 -14.02292 -13.90817 -13.59404 -13.28003 -13.24105 -12.98278 -12.96519 -12.85545 -12.65656 -12.54091 -12.47955 -12.39723 -12.22594 -12.10383 -11.65967 -11.49566 -11.33714 -11.20147 -10.80157 -10.25996 -9.68494 -9.42957 -8.98771 -8.46537 -6.14902 0.44714 0.74968 0.82827 1.27124 1.34754 1.43567 1.51138 1.52505 1.86748 1.98747 2.18081 2.85003 3.17725 3.42244 3.67072 3.69279 3.76224 3.96267 4.03877 4.10993 4.15187 4.20114 4.31801 4.33437 4.41446 4.43475 4.55247 4.60163 4.65947 4.66155 4.72034 4.74456 4.80544 4.96677 5.01640 5.07098 5.09414 5.12955 5.13860 5.27784 5.29746 5.49241 5.63984 5.70433 5.71766 5.74287 6.03094 6.22869 6.37748 6.67923 6.82710 6.98085 7.79276 8.76863 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.001883 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.525746 B =14868.403778 C =15779.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.334 5.334 4 N -0.475 5.475 5 H 0.449 0.551 6 C 0.102 3.898 7 C -0.098 4.098 8 C -0.258 4.258 9 C -0.023 4.023 10 C 0.071 3.929 11 O -0.350 6.350 12 C 0.466 3.534 13 O -0.539 6.539 14 C -0.062 4.062 15 C -0.036 4.036 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.243 4.243 19 C 0.110 3.890 20 O -0.233 6.233 21 C -0.413 4.413 22 H 0.101 0.899 23 C -0.025 4.025 24 N -0.921 5.921 25 Si 1.019 2.981 26 H -0.265 1.265 27 H -0.270 1.270 28 H -0.252 1.252 29 C -0.189 4.189 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.272 0.728 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 14.898 20.736 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.158 5.158 4 N -0.184 5.184 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.157 4.157 8 C -0.270 4.270 9 C -0.062 4.062 10 C -0.003 4.003 11 O -0.266 6.266 12 C 0.310 3.690 13 O -0.428 6.428 14 C -0.099 4.099 15 C -0.037 4.037 16 C -0.195 4.195 17 C -0.092 4.092 18 C -0.262 4.262 19 C 0.060 3.940 20 O -0.140 6.140 21 C -0.489 4.489 22 H 0.118 0.882 23 C -0.222 4.222 24 N -0.560 5.560 25 Si 0.838 3.162 26 H -0.190 1.190 27 H -0.194 1.194 28 H -0.176 1.176 29 C -0.209 4.209 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.515 16.280 20.486 26.966 hybrid contribution 0.995 -0.472 -1.329 1.726 sum -5.520 15.808 19.157 25.443 Atomic orbital electron populations 1.20331 0.85142 1.03912 1.04225 1.22747 0.98246 0.90186 0.97832 1.77243 0.87596 1.23406 1.27510 1.46233 1.07218 1.05298 1.59634 0.70528 1.21445 0.97861 0.85115 0.98341 1.20666 0.92132 0.98551 1.04309 1.19619 0.91682 0.95806 1.19864 1.19654 1.03850 0.89739 0.92917 1.23155 0.99274 0.78090 0.99750 1.86451 1.78079 1.29562 1.32552 1.24046 0.73521 0.90438 0.80991 1.90729 1.48285 1.65987 1.37841 1.20400 1.07410 0.88325 0.93726 1.19159 0.92855 0.96670 0.94991 1.21027 0.97980 1.05486 0.94992 1.21151 0.97691 0.95471 0.94881 1.21331 0.94350 1.09184 1.01361 1.19878 0.88043 0.93294 0.92775 1.83939 1.32379 1.68888 1.28831 1.21818 1.01793 1.36849 0.88489 0.88195 1.26603 0.94208 0.96434 1.04929 1.70186 1.04593 1.41267 1.39913 0.84580 0.79374 0.78018 0.74187 1.19005 1.19435 1.17566 1.20257 1.00119 1.08275 0.92207 0.88728 0.90889 0.89456 0.89789 0.88858 0.88190 0.88631 0.88807 0.92144 0.92704 0.84803 0.82552 0.83087 0.83560 0.86413 0.91862 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.12 71.23 0.72 -0.32 16 2 C 0.08 1.47 7.22 43.10 0.31 1.78 16 3 N -0.33 -7.27 12.70 -47.39 -0.60 -7.87 16 4 N -0.47 -7.77 7.36 -48.01 -0.35 -8.12 16 5 H 0.45 4.59 8.96 -213.33 -1.91 2.68 16 6 C 0.10 1.57 7.21 41.40 0.30 1.86 16 7 C -0.10 -0.89 10.22 71.23 0.73 -0.16 16 8 C -0.26 -4.46 5.35 -20.14 -0.11 -4.56 16 9 C -0.02 -0.34 5.54 29.85 0.17 -0.17 16 10 C 0.07 1.45 5.45 71.98 0.39 1.84 16 11 O -0.35 -7.62 10.22 -51.42 -0.53 -8.14 16 12 C 0.47 12.67 7.95 71.23 0.57 13.24 16 13 O -0.54 -19.91 15.78 21.97 0.35 -19.56 16 14 C -0.06 -1.40 5.94 29.10 0.17 -1.23 16 15 C -0.04 -1.22 4.37 -19.88 -0.09 -1.31 16 16 C -0.18 -5.53 9.70 22.30 0.22 -5.31 16 17 C -0.07 -2.61 10.04 22.25 0.22 -2.38 16 18 C -0.24 -10.96 9.17 22.39 0.21 -10.76 16 19 C 0.11 5.68 6.65 22.58 0.15 5.83 16 20 O -0.23 -14.46 9.76 -22.86 -0.22 -14.68 16 21 C -0.41 -24.66 9.49 67.92 0.64 -24.02 16 22 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 23 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 24 N -0.92 -57.41 13.67 21.61 0.30 -57.12 16 25 Si 1.02 43.62 29.55 68.60 2.03 45.64 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 29 C -0.19 -8.29 9.65 22.39 0.22 -8.07 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.01 7.92 -2.39 -0.02 0.99 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.73 7.14 -2.38 -0.02 0.71 16 36 H 0.10 1.13 7.92 -2.39 -0.02 1.11 16 37 H 0.09 1.09 7.14 -2.39 -0.02 1.08 16 38 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.13 2.53 8.08 -2.39 -0.02 2.51 16 41 H 0.16 2.19 8.08 -2.38 -0.02 2.17 16 42 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -84.96 397.31 5.36 -79.60 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.89 Total: 24.94 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 5.28 Total: -34.70 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -0.66 Total: -73.10 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.40 Total: -42.38 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -84.96 5.36 -79.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788202928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.049 kcal (2) G-P(sol) polarization free energy of solvation -84.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds