Wall clock time and date at job start Wed Apr 1 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46964 * 266.02238 * 3 2 1 5 5 H 1.48492 * 109.47396 * 26.01734 * 3 2 1 6 6 H 1.48500 * 109.47475 * 146.02055 * 3 2 1 7 7 C 1.37879 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99527 * 4.31720 * 7 2 1 9 9 C 1.50697 * 120.00253 * 184.31611 * 7 2 1 10 10 O 1.45202 * 112.84982 * 65.38092 * 9 7 2 11 11 C 1.34234 * 116.99987 * 63.89722 * 10 9 7 12 12 O 1.20823 * 120.00092 * 4.81945 * 11 10 9 13 13 C 1.50697 * 119.99948 * 184.81640 * 11 10 9 14 14 H 1.09001 * 110.85818 * 29.00465 * 13 11 10 15 15 C 1.54631 * 110.96585 * 265.21817 * 13 11 10 16 16 C 1.51287 * 104.19436 * 217.04394 * 15 13 11 17 17 O 1.21277 * 124.94321 * 196.27439 * 16 15 13 18 18 N 1.34424 * 110.11277 * 16.25481 * 16 15 13 19 19 C 1.46499 * 124.34757 * 180.40391 * 18 16 15 20 20 C 1.50705 * 109.47114 * 90.02337 * 19 18 16 21 21 C 1.38231 * 119.61379 * 94.99911 * 20 19 18 22 22 C 1.38627 * 119.15791 * 180.02562 * 21 20 19 23 23 C 1.38669 * 118.42503 * 0.02562 * 22 21 20 24 24 C 1.38192 * 119.16134 * 359.93546 * 23 22 21 25 25 N 1.31847 * 119.62086 * 274.97896 * 20 19 18 26 26 C 1.46761 * 111.30360 * 0.67380 * 18 16 15 27 27 C 1.53786 * 113.61133 * 196.57369 * 9 7 2 28 28 C 1.53951 * 87.01725 * 89.23324 * 27 9 7 29 29 C 1.53774 * 113.61449 * 294.18234 * 9 7 2 30 30 H 0.97005 * 119.99761 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.49004 * 98.37401 * 15 13 11 32 32 H 1.08992 * 110.48847 * 335.72550 * 15 13 11 33 33 H 1.09004 * 109.47302 * 330.02777 * 19 18 16 34 34 H 1.08998 * 109.47482 * 210.02602 * 19 18 16 35 35 H 1.08001 * 120.42096 * 359.72914 * 21 20 19 36 36 H 1.07999 * 120.78882 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.42294 * 180.02562 * 23 22 21 38 38 H 1.07993 * 119.61565 * 180.02562 * 24 23 22 39 39 H 1.08999 * 110.24933 * 101.71068 * 26 18 16 40 40 H 1.08999 * 110.24362 * 223.72318 * 26 18 16 41 41 H 1.09005 * 113.61187 * 203.74782 * 27 9 7 42 42 H 1.08999 * 113.61606 * 334.65566 * 27 9 7 43 43 H 1.09004 * 113.53698 * 270.81001 * 28 27 9 44 44 H 1.08996 * 113.74512 * 139.94187 * 28 27 9 45 45 H 1.08994 * 113.61761 * 25.35297 * 29 9 7 46 46 H 1.09005 * 113.61335 * 156.25387 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5808 1.9978 -1.3968 5 1 1.4071 2.6755 0.6141 6 1 3.5021 1.4660 0.7825 7 6 2.0045 -1.1940 0.0005 8 1 1.4668 -2.1281 -0.0695 9 6 3.5083 -1.1958 0.0988 10 8 3.9910 -0.6847 1.3692 11 6 3.6695 -1.3838 2.4691 12 8 3.0820 -2.4346 2.3668 13 6 4.0414 -0.8581 3.8316 14 1 4.0789 0.2312 3.8302 15 6 5.3848 -1.4575 4.3081 16 6 5.1935 -1.6613 5.7949 17 8 6.0888 -1.8473 6.5915 18 7 3.8866 -1.6057 6.1047 19 6 3.3513 -1.7550 7.4602 20 6 3.2735 -0.4029 8.1213 21 6 2.0887 0.3082 8.0845 22 6 2.0278 1.5512 8.6952 23 6 3.1660 2.0350 9.3224 24 6 4.3147 1.2668 9.3190 25 7 4.3361 0.0879 8.7283 26 6 3.0644 -1.3827 4.9097 27 6 4.1508 -2.5313 -0.3121 28 6 4.1942 -1.9765 -1.7476 29 6 4.2061 -0.5720 -1.1213 30 1 -0.4850 0.8401 -0.0004 31 1 6.2015 -0.7603 4.1208 32 1 5.5742 -2.4102 3.8137 33 1 4.0062 -2.4056 8.0399 34 1 2.3546 -2.1933 7.4111 35 1 1.2228 -0.0973 7.5823 36 1 1.1155 2.1292 8.6828 37 1 3.1545 2.9993 9.8086 38 1 5.2052 1.6363 9.8056 39 1 2.6079 -2.3181 4.5858 40 1 2.2954 -0.6378 5.1146 41 1 5.1369 -2.6936 0.1232 42 1 3.4886 -3.3890 -0.1944 43 1 3.2940 -2.1899 -2.3241 44 1 5.1096 -2.2224 -2.2857 45 1 3.5885 0.1497 -1.6559 46 1 5.2073 -0.1977 -0.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:59 Heat of formation + Delta-G solvation = -45.395011 kcal Electronic energy + Delta-G solvation = -30505.445804 eV Core-core repulsion = 26361.534843 eV Total energy + Delta-G solvation = -4143.910960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89075 -40.14268 -39.39738 -37.54413 -36.13317 -34.59201 -33.86024 -32.59504 -32.44949 -31.09026 -27.74919 -27.17438 -26.60878 -25.00715 -24.10663 -23.64604 -22.52723 -22.21053 -19.94252 -19.43795 -18.66408 -17.69356 -17.17281 -16.78480 -16.66362 -16.35290 -15.76298 -15.52289 -15.37343 -15.30128 -14.67871 -14.50321 -14.22999 -13.86957 -13.69037 -13.50857 -13.30401 -13.22623 -12.96630 -12.89733 -12.73715 -12.17802 -11.97274 -11.84604 -11.74974 -11.37962 -11.26386 -11.10419 -11.00124 -10.71794 -10.28385 -10.11494 -10.05096 -9.92988 -9.86817 -9.66035 -9.51953 -9.27629 -9.08890 -8.86323 -8.75192 -8.66335 -6.30868 -4.38844 0.80326 1.06837 2.60150 2.80917 3.06731 3.17461 3.28326 3.41181 3.57491 3.71490 4.05057 4.28377 4.32464 4.47026 4.54702 4.62771 4.80210 4.87629 4.94224 4.94890 5.07436 5.14872 5.25178 5.41713 5.45255 5.45333 5.49509 5.53505 5.60612 5.65855 5.75785 5.78035 5.87479 5.93269 5.97748 6.12301 6.32529 6.33195 6.40765 6.45330 6.59850 6.78674 6.89507 7.04569 7.17204 7.40572 7.67643 7.82131 8.18237 8.28296 8.74651 8.84351 9.30498 10.79008 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003307 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.847057 B = 8463.738671 C = 9529.286689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.085 3.915 3 Si 0.863 3.137 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.236 1.236 7 C -0.508 4.508 8 H 0.086 0.914 9 C 0.198 3.802 10 O -0.364 6.364 11 C 0.475 3.525 12 O -0.490 6.490 13 C -0.102 4.102 14 H 0.113 0.887 15 C -0.139 4.139 16 C 0.525 3.475 17 O -0.517 6.517 18 N -0.614 5.614 19 C 0.178 3.822 20 C 0.106 3.894 21 C -0.158 4.158 22 C -0.077 4.077 23 C -0.173 4.173 24 C 0.098 3.902 25 N -0.461 5.461 26 C 0.113 3.887 27 C -0.143 4.143 28 C -0.125 4.125 29 C -0.136 4.136 30 H 0.268 0.732 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 2.731 13.821 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.120 4.120 3 Si 0.690 3.310 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.159 1.159 7 C -0.545 4.545 8 H 0.104 0.896 9 C 0.164 3.836 10 O -0.282 6.282 11 C 0.315 3.685 12 O -0.377 6.377 13 C -0.123 4.123 14 H 0.131 0.869 15 C -0.179 4.179 16 C 0.312 3.688 17 O -0.392 6.392 18 N -0.349 5.349 19 C 0.055 3.945 20 C -0.033 4.033 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.060 4.060 25 N -0.170 5.170 26 C -0.009 4.009 27 C -0.181 4.181 28 C -0.162 4.162 29 C -0.173 4.173 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.290 1.881 14.229 15.671 hybrid contribution -0.766 1.728 -0.113 1.893 sum 5.525 3.608 14.116 15.582 Atomic orbital electron populations 1.69918 1.06485 1.27580 1.47362 1.25022 0.94676 0.99412 0.92926 0.87119 0.81830 0.82855 0.79244 1.20115 1.21904 1.15893 1.20811 0.86956 0.95193 1.51529 0.89604 1.21723 0.94457 0.90856 0.76524 1.86582 1.70351 1.54349 1.16880 1.22227 0.76865 0.83181 0.86187 1.90601 1.36892 1.22855 1.87369 1.21929 0.95985 1.02953 0.91389 0.86886 1.22283 0.97619 1.04404 0.93582 1.20754 0.82224 0.75379 0.90395 1.90732 1.44446 1.48809 1.55258 1.48207 1.07544 1.72501 1.06610 1.20151 1.01143 0.91889 0.81319 1.21689 0.89187 0.97406 0.95064 1.22063 0.99337 0.95807 1.00666 1.21609 0.98705 0.95192 0.94784 1.22194 0.94394 1.01466 1.01224 1.22811 0.97697 0.89961 0.95526 1.67576 1.29258 1.13159 1.07017 1.22157 0.92961 1.03205 0.82594 1.23335 0.99557 0.99218 0.95984 1.22520 1.01148 0.96339 0.96220 1.23288 0.99670 0.97503 0.96871 0.92231 0.87150 0.87120 0.88089 0.88299 0.84521 0.84695 0.84828 0.82800 0.88178 0.89795 0.91834 0.91070 0.89561 0.92397 0.91100 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.43 0.77 -24.52 16 2 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.86 20.27 24.62 -169.99 -4.19 16.09 16 4 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.24 -5.31 5.83 56.52 0.33 -4.98 16 7 C -0.51 -13.58 7.80 -34.44 -0.27 -13.85 16 8 H 0.09 2.57 8.05 -52.48 -0.42 2.15 16 9 C 0.20 4.48 0.24 -90.96 -0.02 4.46 16 10 O -0.36 -7.90 8.06 -39.27 -0.32 -8.22 16 11 C 0.47 9.40 6.58 36.00 0.24 9.64 16 12 O -0.49 -10.89 14.19 -18.75 -0.27 -11.15 16 13 C -0.10 -1.55 3.67 -90.04 -0.33 -1.88 16 14 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 15 C -0.14 -1.91 6.41 -26.74 -0.17 -2.09 16 16 C 0.52 8.02 8.02 -10.86 -0.09 7.93 16 17 O -0.52 -9.45 17.59 5.56 0.10 -9.36 16 18 N -0.61 -8.17 2.92 -173.67 -0.51 -8.68 16 19 C 0.18 2.02 6.24 -5.19 -0.03 1.99 16 20 C 0.11 1.26 6.36 -82.59 -0.53 0.73 16 21 C -0.16 -1.56 9.72 -39.44 -0.38 -1.94 16 22 C -0.08 -0.67 10.18 -39.28 -0.40 -1.07 16 23 C -0.17 -1.49 10.11 -39.44 -0.40 -1.89 16 24 C 0.10 1.03 11.18 -17.54 -0.20 0.83 16 25 N -0.46 -6.14 10.27 -9.47 -0.10 -6.24 16 26 C 0.11 1.54 6.86 -3.02 -0.02 1.52 16 27 C -0.14 -2.87 6.48 -25.83 -0.17 -3.04 16 28 C -0.12 -2.28 7.81 -25.83 -0.20 -2.48 16 29 C -0.14 -2.73 6.20 -25.92 -0.16 -2.90 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 33 H 0.10 1.23 7.92 -51.93 -0.41 0.82 16 34 H 0.10 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.10 1.46 6.93 -51.93 -0.36 1.10 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.50 5.59 -51.93 -0.29 1.21 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -33.92 380.79 -8.59 -42.51 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.60 Total: 5.65 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.23 Total: -1.82 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.17 Total: -39.44 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.48 Total: -28.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.19 Total: 16.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.92 -8.59 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.881 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds