Wall clock time and date at job start Wed Apr 1 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46964 * 266.02238 * 3 2 1 5 5 H 1.48492 * 109.47396 * 26.01734 * 3 2 1 6 6 H 1.48500 * 109.47475 * 146.02055 * 3 2 1 7 7 C 1.37879 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99527 * 4.31720 * 7 2 1 9 9 C 1.50697 * 120.00253 * 184.31611 * 7 2 1 10 10 O 1.45202 * 112.84982 * 65.38092 * 9 7 2 11 11 C 1.34234 * 116.99987 * 63.89722 * 10 9 7 12 12 O 1.20823 * 120.00092 * 4.81945 * 11 10 9 13 13 C 1.50697 * 119.99948 * 184.81640 * 11 10 9 14 14 H 1.09001 * 110.85818 * 29.00465 * 13 11 10 15 15 C 1.54631 * 110.96585 * 265.21817 * 13 11 10 16 16 C 1.51287 * 104.19436 * 217.04394 * 15 13 11 17 17 O 1.21277 * 124.94321 * 196.27439 * 16 15 13 18 18 N 1.34424 * 110.11277 * 16.25481 * 16 15 13 19 19 C 1.46499 * 124.34757 * 180.40391 * 18 16 15 20 20 C 1.50705 * 109.47114 * 90.02337 * 19 18 16 21 21 C 1.38231 * 119.61379 * 94.99911 * 20 19 18 22 22 C 1.38627 * 119.15791 * 180.02562 * 21 20 19 23 23 C 1.38669 * 118.42503 * 0.02562 * 22 21 20 24 24 C 1.38192 * 119.16134 * 359.93546 * 23 22 21 25 25 N 1.31847 * 119.62086 * 274.97896 * 20 19 18 26 26 C 1.46761 * 111.30360 * 0.67380 * 18 16 15 27 27 C 1.53786 * 113.61133 * 196.57369 * 9 7 2 28 28 C 1.53951 * 87.01725 * 89.23324 * 27 9 7 29 29 C 1.53774 * 113.61449 * 294.18234 * 9 7 2 30 30 H 0.97005 * 119.99761 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.49004 * 98.37401 * 15 13 11 32 32 H 1.08992 * 110.48847 * 335.72550 * 15 13 11 33 33 H 1.09004 * 109.47302 * 330.02777 * 19 18 16 34 34 H 1.08998 * 109.47482 * 210.02602 * 19 18 16 35 35 H 1.08001 * 120.42096 * 359.72914 * 21 20 19 36 36 H 1.07999 * 120.78882 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.42294 * 180.02562 * 23 22 21 38 38 H 1.07993 * 119.61565 * 180.02562 * 24 23 22 39 39 H 1.08999 * 110.24933 * 101.71068 * 26 18 16 40 40 H 1.08999 * 110.24362 * 223.72318 * 26 18 16 41 41 H 1.09005 * 113.61187 * 203.74782 * 27 9 7 42 42 H 1.08999 * 113.61606 * 334.65566 * 27 9 7 43 43 H 1.09004 * 113.53698 * 270.81001 * 28 27 9 44 44 H 1.08996 * 113.74512 * 139.94187 * 28 27 9 45 45 H 1.08994 * 113.61761 * 25.35297 * 29 9 7 46 46 H 1.09005 * 113.61335 * 156.25387 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5808 1.9978 -1.3968 5 1 1.4071 2.6755 0.6141 6 1 3.5021 1.4660 0.7825 7 6 2.0045 -1.1940 0.0005 8 1 1.4668 -2.1281 -0.0695 9 6 3.5083 -1.1958 0.0988 10 8 3.9910 -0.6847 1.3692 11 6 3.6695 -1.3838 2.4691 12 8 3.0820 -2.4346 2.3668 13 6 4.0414 -0.8581 3.8316 14 1 4.0789 0.2312 3.8302 15 6 5.3848 -1.4575 4.3081 16 6 5.1935 -1.6613 5.7949 17 8 6.0888 -1.8473 6.5915 18 7 3.8866 -1.6057 6.1047 19 6 3.3513 -1.7550 7.4602 20 6 3.2735 -0.4029 8.1213 21 6 2.0887 0.3082 8.0845 22 6 2.0278 1.5512 8.6952 23 6 3.1660 2.0350 9.3224 24 6 4.3147 1.2668 9.3190 25 7 4.3361 0.0879 8.7283 26 6 3.0644 -1.3827 4.9097 27 6 4.1508 -2.5313 -0.3121 28 6 4.1942 -1.9765 -1.7476 29 6 4.2061 -0.5720 -1.1213 30 1 -0.4850 0.8401 -0.0004 31 1 6.2015 -0.7603 4.1208 32 1 5.5742 -2.4102 3.8137 33 1 4.0062 -2.4056 8.0399 34 1 2.3546 -2.1933 7.4111 35 1 1.2228 -0.0973 7.5823 36 1 1.1155 2.1292 8.6828 37 1 3.1545 2.9993 9.8086 38 1 5.2052 1.6363 9.8056 39 1 2.6079 -2.3181 4.5858 40 1 2.2954 -0.6378 5.1146 41 1 5.1369 -2.6936 0.1232 42 1 3.4886 -3.3890 -0.1944 43 1 3.2940 -2.1899 -2.3241 44 1 5.1096 -2.2224 -2.2857 45 1 3.5885 0.1497 -1.6559 46 1 5.2073 -0.1977 -0.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:59 Heat of formation + Delta-G solvation = -66.432632 kcal Electronic energy + Delta-G solvation = -30506.358064 eV Core-core repulsion = 26361.534843 eV Total energy + Delta-G solvation = -4144.823220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07112 -41.24658 -40.70182 -39.11962 -37.40725 -36.25818 -34.85677 -34.50851 -33.34547 -32.01767 -29.00473 -28.64797 -27.92497 -26.61455 -25.52367 -24.45882 -23.86836 -23.17156 -21.33457 -20.61881 -20.44819 -19.23176 -18.26863 -18.05175 -17.62050 -17.30830 -17.29633 -17.07953 -16.59788 -16.49289 -16.10250 -15.85277 -15.56098 -15.16838 -14.86951 -14.73692 -14.58314 -14.45509 -14.26443 -14.03401 -13.76695 -13.51901 -13.37607 -13.09846 -12.93182 -12.81877 -12.70086 -12.54647 -12.39962 -12.33106 -12.01044 -11.78276 -11.63463 -11.36754 -11.05121 -10.91896 -10.82889 -10.61717 -10.51551 -10.47232 -10.04825 -9.81834 -8.38563 -6.51697 0.05955 0.35484 1.28925 1.34289 1.41524 1.51686 1.57763 1.84452 2.11004 2.33563 2.92005 2.98590 3.17519 3.26762 3.35044 3.70056 3.72365 3.79281 3.88145 3.96272 4.00445 4.10439 4.14407 4.16814 4.21985 4.35639 4.39487 4.43832 4.48175 4.56365 4.67741 4.71766 4.80977 4.81554 4.83413 4.87804 5.05661 5.16122 5.17158 5.25352 5.25480 5.36543 5.55978 5.64797 5.76268 5.87209 5.93669 6.33275 6.60627 7.01751 7.06521 7.13437 7.23606 8.75712 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003307 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.847057 B = 8463.738671 C = 9529.286689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.035 3.965 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.216 1.216 7 C -0.511 4.511 8 H 0.032 0.968 9 C 0.182 3.818 10 O -0.365 6.365 11 C 0.470 3.530 12 O -0.521 6.521 13 C -0.094 4.094 14 H 0.131 0.869 15 C -0.130 4.130 16 C 0.521 3.479 17 O -0.553 6.553 18 N -0.606 5.606 19 C 0.174 3.826 20 C 0.085 3.915 21 C -0.161 4.161 22 C -0.080 4.080 23 C -0.165 4.165 24 C 0.079 3.921 25 N -0.502 5.502 26 C 0.119 3.881 27 C -0.140 4.140 28 C -0.113 4.113 29 C -0.132 4.132 30 H 0.270 0.730 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.059 0.941 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 4.963 14.243 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.165 4.165 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.138 1.138 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.147 3.853 10 O -0.283 6.283 11 C 0.313 3.687 12 O -0.410 6.410 13 C -0.114 4.114 14 H 0.149 0.851 15 C -0.170 4.170 16 C 0.309 3.691 17 O -0.431 6.431 18 N -0.339 5.339 19 C 0.052 3.948 20 C -0.054 4.054 21 C -0.181 4.181 22 C -0.106 4.106 23 C -0.185 4.185 24 C -0.078 4.078 25 N -0.212 5.212 26 C -0.004 4.004 27 C -0.178 4.178 28 C -0.150 4.150 29 C -0.169 4.169 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.752 4.102 14.654 17.078 hybrid contribution -1.297 0.933 -0.164 1.606 sum 6.455 5.034 14.490 16.642 Atomic orbital electron populations 1.70056 1.08378 1.28562 1.49647 1.25820 0.95269 1.03010 0.92443 0.86203 0.81099 0.78106 0.80177 1.18735 1.22092 1.13762 1.20817 0.89504 0.93111 1.51375 0.94990 1.21712 0.92327 0.93512 0.77712 1.86540 1.70190 1.54505 1.17045 1.23047 0.75827 0.82645 0.87212 1.90603 1.38219 1.24298 1.87866 1.21925 0.97047 1.03803 0.88635 0.85143 1.22273 0.97389 1.04889 0.92453 1.20957 0.82465 0.74964 0.90672 1.90714 1.45487 1.50704 1.56174 1.48247 1.06937 1.71417 1.07317 1.20340 1.02134 0.92281 0.80032 1.21697 0.89912 0.97675 0.96107 1.22289 0.99074 0.96174 1.00586 1.22019 0.99793 0.94924 0.93895 1.22529 0.93508 1.02188 1.00234 1.23182 0.99233 0.89669 0.95748 1.67509 1.30539 1.14732 1.08398 1.22099 0.92917 1.03121 0.82236 1.23319 0.99797 0.97095 0.97566 1.22472 1.02516 0.94802 0.95201 1.23324 1.00601 0.98034 0.94933 0.92111 0.85254 0.87035 0.89522 0.85471 0.82785 0.81976 0.81851 0.81424 0.89383 0.87939 0.89529 0.93613 0.91147 0.88178 0.92224 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 2 C 0.04 1.95 5.47 84.66 0.46 2.42 16 3 Si 0.92 40.97 24.62 68.60 1.69 42.66 16 4 H -0.26 -11.06 6.87 99.48 0.68 -10.38 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.22 -8.80 5.83 99.48 0.58 -8.22 16 7 C -0.51 -28.07 7.80 25.60 0.20 -27.87 16 8 H 0.03 2.04 8.05 -2.91 -0.02 2.02 16 9 C 0.18 8.04 0.24 -11.02 0.00 8.04 16 10 O -0.37 -15.14 8.06 -51.46 -0.41 -15.56 16 11 C 0.47 18.16 6.58 71.23 0.47 18.63 16 12 O -0.52 -23.46 14.19 21.97 0.31 -23.15 16 13 C -0.09 -2.68 3.67 -10.42 -0.04 -2.72 16 14 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 15 C -0.13 -3.37 6.41 30.59 0.20 -3.18 16 16 C 0.52 15.55 8.02 87.90 0.71 16.26 16 17 O -0.55 -20.24 17.59 -3.02 -0.05 -20.29 16 18 N -0.61 -15.58 2.92 -821.94 -2.40 -17.98 16 19 C 0.17 3.86 6.24 85.63 0.53 4.39 16 20 C 0.08 1.93 6.36 42.56 0.27 2.20 16 21 C -0.16 -2.83 9.72 22.36 0.22 -2.61 16 22 C -0.08 -1.18 10.18 22.47 0.23 -0.95 16 23 C -0.16 -2.42 10.11 22.36 0.23 -2.19 16 24 C 0.08 1.56 11.18 84.67 0.95 2.51 16 25 N -0.50 -13.14 10.27 -183.88 -1.89 -15.03 16 26 C 0.12 3.07 6.86 86.90 0.60 3.67 16 27 C -0.14 -5.47 6.48 31.18 0.20 -5.27 16 28 C -0.11 -3.85 7.81 31.18 0.24 -3.61 16 29 C -0.13 -4.91 6.20 31.12 0.19 -4.72 16 30 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 31 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.11 2.90 7.89 -2.39 -0.02 2.88 16 33 H 0.09 2.16 7.92 -2.38 -0.02 2.14 16 34 H 0.13 1.98 8.04 -2.39 -0.02 1.96 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.09 2.54 6.93 -2.39 -0.02 2.53 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 42 H 0.04 1.98 8.09 -2.39 -0.02 1.96 16 43 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.06 2.36 5.59 -2.39 -0.01 2.35 16 46 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -77.26 380.79 4.04 -73.22 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.84 Total: 26.04 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.65 Total: 4.99 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -3.99 Total: -87.92 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.16 Total: -58.99 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.69 Total: 42.66 kcal Total: -77.26 4.04 -73.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.792 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds