Wall clock time and date at job start Wed Apr 1 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47048 * 240.00152 * 3 2 1 5 5 H 1.48508 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99803 * 3 2 1 7 7 C 1.37874 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 173.76214 * 7 2 1 9 9 C 1.50700 * 119.99623 * 353.76302 * 7 2 1 10 10 O 1.45205 * 112.85103 * 62.68522 * 9 7 2 11 11 C 1.34234 * 117.00024 * 65.19671 * 10 9 7 12 12 O 1.20832 * 119.99925 * 357.64120 * 11 10 9 13 13 C 1.50700 * 120.00100 * 177.64626 * 11 10 9 14 14 H 1.09003 * 110.88369 * 303.81143 * 13 11 10 15 15 C 1.54626 * 110.97135 * 67.61729 * 13 11 10 16 16 C 1.51292 * 104.25424 * 142.70191 * 15 13 11 17 17 O 1.21279 * 124.94112 * 164.01430 * 16 15 13 18 18 N 1.34420 * 110.11285 * 344.14244 * 16 15 13 19 19 C 1.46500 * 124.34974 * 179.43263 * 18 16 15 20 20 C 1.50697 * 109.47415 * 269.70742 * 19 18 16 21 21 C 1.38231 * 119.61791 * 94.99896 * 20 19 18 22 22 C 1.38621 * 119.16120 * 180.02562 * 21 20 19 23 23 C 1.38673 * 118.42283 * 0.24611 * 22 21 20 24 24 C 1.38179 * 119.15969 * 359.53307 * 23 22 21 25 25 N 1.31854 * 119.61854 * 275.02151 * 20 19 18 26 26 C 1.46761 * 111.30219 * 359.17850 * 18 16 15 27 27 C 1.53788 * 113.61467 * 193.87582 * 9 7 2 28 28 C 1.53953 * 87.01483 * 89.23190 * 27 9 7 29 29 C 1.53777 * 113.61872 * 291.48757 * 9 7 2 30 30 H 0.96996 * 120.00231 * 5.01525 * 1 2 3 31 31 H 1.08996 * 110.49007 * 261.59515 * 15 13 11 32 32 H 1.09004 * 110.48518 * 24.11089 * 15 13 11 33 33 H 1.09004 * 109.47013 * 149.70649 * 19 18 16 34 34 H 1.08998 * 109.46876 * 29.71033 * 19 18 16 35 35 H 1.08003 * 120.41718 * 0.02562 * 21 20 19 36 36 H 1.08002 * 120.78942 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.42106 * 179.74964 * 23 22 21 38 38 H 1.08008 * 119.61764 * 180.25055 * 24 23 22 39 39 H 1.08997 * 110.25304 * 136.27839 * 26 18 16 40 40 H 1.08999 * 110.24438 * 258.19304 * 26 18 16 41 41 H 1.08994 * 113.61278 * 203.75512 * 27 9 7 42 42 H 1.09001 * 113.61170 * 334.65431 * 27 9 7 43 43 H 1.09003 * 113.54041 * 270.80955 * 28 27 9 44 44 H 1.09000 * 113.66163 * 139.93640 * 28 27 9 45 45 H 1.08994 * 113.61657 * 25.34732 * 29 9 7 46 46 H 1.09003 * 113.61639 * 156.25584 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1967 -0.1011 9 6 1.2578 -2.4952 0.1429 10 8 0.3363 -2.7392 -0.9524 11 6 0.8713 -2.9181 -2.1705 12 8 2.0666 -2.8301 -2.3243 13 6 -0.0188 -3.2287 -3.3462 14 1 -0.6212 -4.1165 -3.1536 15 6 -0.9142 -2.0180 -3.6975 16 6 -0.9830 -2.0316 -5.2088 17 8 -1.7961 -1.4241 -5.8726 18 7 -0.0136 -2.8173 -5.7086 19 6 0.1972 -3.0627 -7.1374 20 6 -0.5988 -4.2695 -7.5627 21 6 -1.8559 -4.0998 -8.1120 22 6 -2.5801 -5.2165 -8.4995 23 6 -2.0125 -6.4681 -8.3144 24 6 -0.7488 -6.5595 -7.7629 25 7 -0.0883 -5.4751 -7.4062 26 6 0.8104 -3.3931 -4.6392 27 6 2.1655 -3.6946 0.4630 28 6 1.9567 -3.3530 1.9496 29 6 0.6302 -2.6965 1.5323 30 1 -0.4850 0.8368 -0.0734 31 1 -1.9078 -2.1405 -3.2665 32 1 -0.4586 -1.0920 -3.3465 33 1 1.2562 -3.2421 -7.3229 34 1 -0.1292 -2.1928 -7.7074 35 1 -2.2687 -3.1097 -8.2377 36 1 -3.5649 -5.1144 -8.9311 37 1 -2.5498 -7.3601 -8.6010 38 1 -0.2980 -7.5304 -7.6193 39 1 0.9988 -4.4487 -4.8349 40 1 1.7526 -2.8515 -4.5560 41 1 1.7395 -4.6545 0.1715 42 1 3.1938 -3.5665 0.1248 43 1 2.6892 -2.6471 2.3411 44 1 1.8293 -4.2288 2.5860 45 1 0.4208 -1.7639 2.0561 46 1 -0.2163 -3.3832 1.5337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:02 Heat of formation + Delta-G solvation = -52.948580 kcal Electronic energy + Delta-G solvation = -30449.069660 eV Core-core repulsion = 26304.831152 eV Total energy + Delta-G solvation = -4144.238508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80229 -40.04046 -39.12619 -37.28411 -36.01662 -34.24465 -33.79189 -32.59939 -32.33133 -30.99964 -27.54419 -27.01484 -26.17960 -24.60979 -23.94001 -23.68024 -22.51966 -22.20766 -19.72735 -19.24181 -18.60377 -17.42387 -17.02253 -16.81804 -16.44251 -16.37084 -15.70373 -15.25668 -15.13540 -14.84063 -14.58648 -14.37360 -14.16513 -13.93052 -13.60877 -13.39335 -13.31483 -13.07647 -13.01257 -12.57463 -12.18859 -12.07005 -11.92821 -11.64958 -11.31998 -11.20437 -11.06895 -10.92628 -10.91618 -10.48060 -10.32451 -10.11315 -9.94920 -9.87331 -9.84839 -9.72266 -9.33355 -9.23293 -8.85440 -8.69335 -8.57854 -8.56986 -6.14842 -4.27243 0.81684 1.05968 2.68372 2.95241 3.25408 3.30926 3.31916 3.35030 3.68170 3.84459 4.05051 4.32153 4.47681 4.53438 4.62150 4.71846 4.85219 4.91398 5.10173 5.12531 5.21560 5.24402 5.33147 5.49178 5.53641 5.65039 5.71741 5.73315 5.84525 5.88638 5.89961 5.95865 6.05262 6.16729 6.22799 6.39557 6.44679 6.47459 6.51427 6.60037 6.87761 7.07196 7.12186 7.25459 7.50089 7.74223 7.76958 7.88169 8.23869 8.28954 8.76413 9.11956 9.43092 10.89055 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003005 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.249067 B = 9315.124114 C =10223.339042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.241 3.759 10 O -0.338 6.338 11 C 0.474 3.526 12 O -0.506 6.506 13 C -0.099 4.099 14 H 0.112 0.888 15 C -0.135 4.135 16 C 0.523 3.477 17 O -0.534 6.534 18 N -0.613 5.613 19 C 0.177 3.823 20 C 0.107 3.893 21 C -0.150 4.150 22 C -0.078 4.078 23 C -0.173 4.173 24 C 0.096 3.904 25 N -0.471 5.471 26 C 0.117 3.883 27 C -0.159 4.159 28 C -0.132 4.132 29 C -0.108 4.108 30 H 0.264 0.736 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -11.255 -12.920 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.254 6.254 11 C 0.315 3.685 12 O -0.395 6.395 13 C -0.119 4.119 14 H 0.130 0.870 15 C -0.175 4.175 16 C 0.312 3.688 17 O -0.411 6.411 18 N -0.347 5.347 19 C 0.055 3.945 20 C -0.032 4.032 21 C -0.170 4.170 22 C -0.104 4.104 23 C -0.193 4.193 24 C -0.061 4.061 25 N -0.181 5.181 26 C -0.006 4.006 27 C -0.197 4.197 28 C -0.170 4.170 29 C -0.146 4.146 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.288 -10.851 -12.881 17.161 hybrid contribution -0.447 0.835 -0.429 1.040 sum -3.735 -10.016 -13.310 17.071 Atomic orbital electron populations 1.70013 1.05754 1.27263 1.46501 1.25056 0.94878 0.99230 0.93737 0.86670 0.79826 0.82722 0.79004 1.20022 1.21076 1.19879 1.20901 0.93621 0.88706 1.52041 0.91439 1.21210 0.85216 0.92233 0.80544 1.86494 1.44151 1.78687 1.16063 1.22221 0.87237 0.74199 0.84813 1.90570 1.16539 1.46889 1.85503 1.21860 0.97149 1.00436 0.92501 0.87033 1.22229 1.02858 1.00264 0.92142 1.21050 0.79487 0.77397 0.90876 1.90676 1.38856 1.45465 1.66114 1.48239 1.32506 1.48303 1.05626 1.20141 1.00127 0.93590 0.80686 1.21690 0.93094 0.93441 0.94960 1.22110 0.95207 1.00492 0.99203 1.21617 0.99762 0.92404 0.96636 1.22167 0.97314 0.98492 1.01314 1.22767 0.91791 0.97186 0.94364 1.67503 1.36594 0.98382 1.15590 1.22069 0.94440 1.00411 0.83640 1.23558 1.01269 0.98473 0.96369 1.22571 0.99252 0.99433 0.95715 1.22904 0.95065 0.99919 0.96679 0.92587 0.87009 0.86389 0.88318 0.88261 0.84373 0.84814 0.84848 0.82685 0.89522 0.88606 0.92251 0.91765 0.90227 0.92988 0.90715 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.16 12.77 55.43 0.71 -22.46 16 2 C 0.08 2.05 5.29 -17.82 -0.09 1.95 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.68 7.08 -34.44 -0.24 -13.93 16 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.24 5.81 0.47 -90.96 -0.04 5.76 16 10 O -0.34 -8.00 9.77 -39.27 -0.38 -8.38 16 11 C 0.47 10.06 6.75 36.01 0.24 10.30 16 12 O -0.51 -11.83 13.95 -18.75 -0.26 -12.09 16 13 C -0.10 -1.62 3.66 -90.14 -0.33 -1.95 16 14 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 15 C -0.13 -2.26 6.41 -26.74 -0.17 -2.43 16 16 C 0.52 8.61 8.02 -10.85 -0.09 8.52 16 17 O -0.53 -9.95 17.59 5.56 0.10 -9.85 16 18 N -0.61 -8.73 2.92 -173.78 -0.51 -9.24 16 19 C 0.18 2.11 6.24 -5.20 -0.03 2.08 16 20 C 0.11 1.28 6.36 -82.59 -0.53 0.75 16 21 C -0.15 -1.63 9.72 -39.44 -0.38 -2.02 16 22 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 23 C -0.17 -1.43 10.11 -39.44 -0.40 -1.83 16 24 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 25 N -0.47 -5.66 10.27 -9.47 -0.10 -5.75 16 26 C 0.12 1.71 6.71 -3.12 -0.02 1.69 16 27 C -0.16 -3.36 6.57 -25.82 -0.17 -3.53 16 28 C -0.13 -2.56 7.81 -25.83 -0.20 -2.76 16 29 C -0.11 -2.38 7.28 -25.92 -0.19 -2.56 16 30 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 31 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.12 2.26 7.89 -51.93 -0.41 1.85 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.11 7.82 -51.93 -0.41 0.71 16 35 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.53 6.97 -51.93 -0.36 1.17 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.40 8.09 -51.93 -0.42 0.98 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.77 7.96 -51.93 -0.41 1.36 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -31.70 390.18 -9.46 -41.16 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.63 Total: 5.28 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.24 Total: -0.33 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.10 Total: -37.44 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.55 Total: -30.32 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.70 -9.46 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.793 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds