Wall clock time and date at job start Wed Apr 1 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47048 * 240.00152 * 3 2 1 5 5 H 1.48508 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99803 * 3 2 1 7 7 C 1.37874 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 173.76214 * 7 2 1 9 9 C 1.50700 * 119.99623 * 353.76302 * 7 2 1 10 10 O 1.45205 * 112.85103 * 62.68522 * 9 7 2 11 11 C 1.34234 * 117.00024 * 65.19671 * 10 9 7 12 12 O 1.20832 * 119.99925 * 357.64120 * 11 10 9 13 13 C 1.50700 * 120.00100 * 177.64626 * 11 10 9 14 14 H 1.09003 * 110.88369 * 303.81143 * 13 11 10 15 15 C 1.54626 * 110.97135 * 67.61729 * 13 11 10 16 16 C 1.51292 * 104.25424 * 142.70191 * 15 13 11 17 17 O 1.21279 * 124.94112 * 164.01430 * 16 15 13 18 18 N 1.34420 * 110.11285 * 344.14244 * 16 15 13 19 19 C 1.46500 * 124.34974 * 179.43263 * 18 16 15 20 20 C 1.50697 * 109.47415 * 269.70742 * 19 18 16 21 21 C 1.38231 * 119.61791 * 94.99896 * 20 19 18 22 22 C 1.38621 * 119.16120 * 180.02562 * 21 20 19 23 23 C 1.38673 * 118.42283 * 0.24611 * 22 21 20 24 24 C 1.38179 * 119.15969 * 359.53307 * 23 22 21 25 25 N 1.31854 * 119.61854 * 275.02151 * 20 19 18 26 26 C 1.46761 * 111.30219 * 359.17850 * 18 16 15 27 27 C 1.53788 * 113.61467 * 193.87582 * 9 7 2 28 28 C 1.53953 * 87.01483 * 89.23190 * 27 9 7 29 29 C 1.53777 * 113.61872 * 291.48757 * 9 7 2 30 30 H 0.96996 * 120.00231 * 5.01525 * 1 2 3 31 31 H 1.08996 * 110.49007 * 261.59515 * 15 13 11 32 32 H 1.09004 * 110.48518 * 24.11089 * 15 13 11 33 33 H 1.09004 * 109.47013 * 149.70649 * 19 18 16 34 34 H 1.08998 * 109.46876 * 29.71033 * 19 18 16 35 35 H 1.08003 * 120.41718 * 0.02562 * 21 20 19 36 36 H 1.08002 * 120.78942 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.42106 * 179.74964 * 23 22 21 38 38 H 1.08008 * 119.61764 * 180.25055 * 24 23 22 39 39 H 1.08997 * 110.25304 * 136.27839 * 26 18 16 40 40 H 1.08999 * 110.24438 * 258.19304 * 26 18 16 41 41 H 1.08994 * 113.61278 * 203.75512 * 27 9 7 42 42 H 1.09001 * 113.61170 * 334.65431 * 27 9 7 43 43 H 1.09003 * 113.54041 * 270.80955 * 28 27 9 44 44 H 1.09000 * 113.66163 * 139.93640 * 28 27 9 45 45 H 1.08994 * 113.61657 * 25.34732 * 29 9 7 46 46 H 1.09003 * 113.61639 * 156.25584 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1967 -0.1011 9 6 1.2578 -2.4952 0.1429 10 8 0.3363 -2.7392 -0.9524 11 6 0.8713 -2.9181 -2.1705 12 8 2.0666 -2.8301 -2.3243 13 6 -0.0188 -3.2287 -3.3462 14 1 -0.6212 -4.1165 -3.1536 15 6 -0.9142 -2.0180 -3.6975 16 6 -0.9830 -2.0316 -5.2088 17 8 -1.7961 -1.4241 -5.8726 18 7 -0.0136 -2.8173 -5.7086 19 6 0.1972 -3.0627 -7.1374 20 6 -0.5988 -4.2695 -7.5627 21 6 -1.8559 -4.0998 -8.1120 22 6 -2.5801 -5.2165 -8.4995 23 6 -2.0125 -6.4681 -8.3144 24 6 -0.7488 -6.5595 -7.7629 25 7 -0.0883 -5.4751 -7.4062 26 6 0.8104 -3.3931 -4.6392 27 6 2.1655 -3.6946 0.4630 28 6 1.9567 -3.3530 1.9496 29 6 0.6302 -2.6965 1.5323 30 1 -0.4850 0.8368 -0.0734 31 1 -1.9078 -2.1405 -3.2665 32 1 -0.4586 -1.0920 -3.3465 33 1 1.2562 -3.2421 -7.3229 34 1 -0.1292 -2.1928 -7.7074 35 1 -2.2687 -3.1097 -8.2377 36 1 -3.5649 -5.1144 -8.9311 37 1 -2.5498 -7.3601 -8.6010 38 1 -0.2980 -7.5304 -7.6193 39 1 0.9988 -4.4487 -4.8349 40 1 1.7526 -2.8515 -4.5560 41 1 1.7395 -4.6545 0.1715 42 1 3.1938 -3.5665 0.1248 43 1 2.6892 -2.6471 2.3411 44 1 1.8293 -4.2288 2.5860 45 1 0.4208 -1.7639 2.0561 46 1 -0.2163 -3.3832 1.5337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:01 Heat of formation + Delta-G solvation = -70.054562 kcal Electronic energy + Delta-G solvation = -30449.811431 eV Core-core repulsion = 26304.831152 eV Total energy + Delta-G solvation = -4144.980279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01511 -41.11990 -40.62581 -38.95161 -37.39287 -36.02268 -34.85808 -34.34601 -33.34981 -31.98865 -28.89667 -28.27500 -27.84429 -26.33205 -25.47752 -24.46166 -23.93995 -23.18796 -21.20534 -20.55295 -20.43029 -18.92585 -18.23443 -18.12383 -17.59412 -17.23309 -17.01953 -16.80035 -16.59460 -16.45154 -16.06716 -15.83107 -15.62438 -15.17340 -14.71497 -14.61037 -14.58309 -14.31192 -14.13341 -13.89282 -13.68812 -13.47582 -13.09753 -12.94600 -12.91238 -12.82017 -12.71326 -12.60838 -12.36938 -12.19183 -12.11292 -11.74914 -11.61743 -11.29574 -10.95808 -10.82302 -10.76329 -10.54575 -10.47896 -10.39737 -10.04817 -9.82777 -8.17038 -6.34083 0.06225 0.34123 1.36586 1.36810 1.38733 1.45421 1.64165 1.80509 2.26845 2.37475 2.91713 3.09958 3.19838 3.28831 3.40085 3.71322 3.79883 3.87536 4.01318 4.03894 4.05342 4.13222 4.22418 4.23184 4.39141 4.40847 4.42920 4.52438 4.55839 4.65095 4.69931 4.79386 4.83140 4.88541 4.90149 4.97211 5.19450 5.19823 5.26590 5.33872 5.40329 5.46810 5.66062 5.76570 5.79412 5.88138 6.04627 6.45910 6.70382 6.94971 7.01226 7.30368 7.43833 8.85634 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003005 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.249067 B = 9315.124114 C =10223.339042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.218 3.782 10 O -0.351 6.351 11 C 0.469 3.531 12 O -0.532 6.532 13 C -0.088 4.088 14 H 0.141 0.859 15 C -0.131 4.131 16 C 0.525 3.475 17 O -0.558 6.558 18 N -0.603 5.603 19 C 0.174 3.826 20 C 0.088 3.912 21 C -0.164 4.164 22 C -0.081 4.081 23 C -0.163 4.163 24 C 0.085 3.915 25 N -0.494 5.494 26 C 0.127 3.873 27 C -0.151 4.151 28 C -0.114 4.114 29 C -0.107 4.107 30 H 0.264 0.736 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.180 0.820 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -13.451 -13.603 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.208 1.208 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.184 3.816 10 O -0.267 6.267 11 C 0.311 3.689 12 O -0.423 6.423 13 C -0.108 4.108 14 H 0.159 0.841 15 C -0.172 4.172 16 C 0.314 3.686 17 O -0.438 6.438 18 N -0.335 5.335 19 C 0.053 3.947 20 C -0.050 4.050 21 C -0.185 4.185 22 C -0.107 4.107 23 C -0.183 4.183 24 C -0.072 4.072 25 N -0.204 5.204 26 C 0.005 3.995 27 C -0.189 4.189 28 C -0.151 4.151 29 C -0.145 4.145 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.197 0.803 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.904 -13.059 -13.569 19.233 hybrid contribution -0.246 1.436 -0.292 1.486 sum -4.151 -11.623 -13.861 18.559 Atomic orbital electron populations 1.70083 1.06498 1.27662 1.47309 1.25602 0.95589 1.01593 0.93644 0.85913 0.78872 0.79953 0.78765 1.20790 1.20443 1.19047 1.21020 0.92950 0.90482 1.52268 0.93364 1.21396 0.86334 0.92443 0.81439 1.86465 1.44265 1.78941 1.17030 1.23005 0.87582 0.73119 0.85152 1.90551 1.17966 1.47986 1.85801 1.21865 0.96658 1.01188 0.91040 0.84095 1.22137 1.03123 0.99130 0.92781 1.20889 0.79729 0.77540 0.90479 1.90660 1.40037 1.46641 1.66414 1.48241 1.31346 1.47260 1.06699 1.20317 1.01145 0.94307 0.78969 1.21553 0.93600 0.93384 0.96419 1.22185 0.95286 1.01107 0.99923 1.21973 1.00626 0.92106 0.95984 1.22544 0.96783 0.99380 0.99577 1.23287 0.92469 0.97469 0.93976 1.67468 1.37512 0.98853 1.16602 1.21966 0.93397 1.01256 0.82913 1.23487 0.99831 0.98062 0.97536 1.22495 0.97163 1.00321 0.95160 1.22884 0.96835 0.99403 0.95395 0.92691 0.86157 0.89244 0.87093 0.88006 0.84983 0.82382 0.81540 0.80292 0.87572 0.90087 0.90558 0.93190 0.90822 0.89156 0.93169 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.26 12.77 21.45 0.27 -47.98 16 2 C 0.04 2.14 5.29 84.65 0.45 2.59 16 3 Si 0.94 43.37 29.54 68.60 2.03 45.39 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.53 -28.72 7.08 25.60 0.18 -28.54 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.22 10.51 0.47 -11.01 -0.01 10.51 16 10 O -0.35 -16.67 9.77 -51.45 -0.50 -17.18 16 11 C 0.47 19.96 6.75 71.24 0.48 20.45 16 12 O -0.53 -25.29 13.95 21.95 0.31 -24.99 16 13 C -0.09 -2.81 3.66 -10.48 -0.04 -2.85 16 14 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 15 C -0.13 -4.44 6.41 30.59 0.20 -4.24 16 16 C 0.53 17.29 8.02 87.90 0.71 18.00 16 17 O -0.56 -20.95 17.59 -3.03 -0.05 -21.01 16 18 N -0.60 -16.87 2.92 -822.32 -2.40 -19.27 16 19 C 0.17 4.06 6.24 85.63 0.53 4.60 16 20 C 0.09 2.02 6.36 42.55 0.27 2.29 16 21 C -0.16 -3.41 9.72 22.36 0.22 -3.20 16 22 C -0.08 -1.26 10.18 22.47 0.23 -1.03 16 23 C -0.16 -2.16 10.11 22.36 0.23 -1.93 16 24 C 0.09 1.40 11.18 84.67 0.95 2.35 16 25 N -0.49 -11.02 10.27 -183.88 -1.89 -12.90 16 26 C 0.13 3.62 6.71 86.83 0.58 4.21 16 27 C -0.15 -6.27 6.57 31.18 0.20 -6.07 16 28 C -0.11 -4.23 7.81 31.18 0.24 -3.99 16 29 C -0.11 -4.66 7.28 31.12 0.23 -4.44 16 30 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 31 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.09 3.57 7.89 -2.38 -0.02 3.55 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.10 2.29 7.82 -2.39 -0.02 2.27 16 35 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.08 2.60 6.97 -2.39 -0.02 2.59 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.05 2.18 8.09 -2.39 -0.02 2.16 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.05 2.39 7.96 -2.39 -0.02 2.38 16 46 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -69.50 390.18 4.40 -65.10 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.99 Total: 24.12 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.65 Total: 8.71 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -4.01 Total: -80.16 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -0.25 Total: -63.17 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.50 4.40 -65.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.951 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds