Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30840 * 125.89799 * 2 1 4 4 N 1.40086 * 108.20059 * 180.26365 * 3 2 1 5 5 C 1.46497 * 126.03455 * 179.70199 * 4 3 2 6 6 C 1.34953 * 107.92757 * 359.71431 * 4 3 2 7 7 C 1.50698 * 126.12751 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74524 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.04047 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.46986 * 89.99759 * 9 8 6 11 11 C 1.50701 * 109.46986 * 180.02562 * 10 9 8 12 12 O 1.20832 * 120.00056 * 359.72830 * 11 10 9 13 13 O 1.34265 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.35917 * 117.00061 * 174.73710 * 13 11 10 15 15 C 1.38822 * 120.02433 * 255.02282 * 14 13 11 16 16 C 1.38193 * 120.08320 * 179.71985 * 15 14 13 17 17 C 1.38152 * 120.12348 * 0.55294 * 16 15 14 18 18 C 1.38898 * 120.03864 * 359.72393 * 17 16 15 19 19 O 1.35751 * 120.04062 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00495 * 185.61658 * 19 18 17 21 21 H 1.08001 * 119.99319 * 354.93808 * 20 19 18 22 22 C 1.38646 * 120.00064 * 174.93602 * 20 19 18 23 23 N 1.31551 * 120.00432 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47042 * 60.00409 * 24 22 20 26 26 H 1.48498 * 109.47104 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47602 * 300.00535 * 24 22 20 28 28 C 1.38575 * 120.01894 * 75.29573 * 14 13 11 29 29 H 1.09001 * 109.46697 * 270.20919 * 1 2 3 30 30 H 1.09000 * 109.47089 * 30.20760 * 1 2 3 31 31 H 1.08993 * 109.47146 * 150.21286 * 1 2 3 32 32 H 1.09002 * 109.47033 * 270.01821 * 5 4 3 33 33 H 1.09002 * 109.47320 * 30.01991 * 5 4 3 34 34 H 1.09007 * 109.47128 * 150.02231 * 5 4 3 35 35 H 1.08997 * 109.47020 * 270.03180 * 7 6 4 36 36 H 1.09009 * 109.46928 * 30.02739 * 7 6 4 37 37 H 1.08993 * 109.47239 * 150.02951 * 7 6 4 38 38 H 1.08995 * 109.46663 * 329.99749 * 9 8 6 39 39 H 1.08997 * 109.47090 * 210.00201 * 9 8 6 40 40 H 1.09001 * 109.46770 * 60.00654 * 10 9 8 41 41 H 1.08995 * 109.47063 * 300.00233 * 10 9 8 42 42 H 1.07998 * 119.95709 * 359.97438 * 15 14 13 43 43 H 1.07994 * 119.93646 * 180.25052 * 16 15 14 44 44 H 1.07993 * 119.97997 * 179.69671 * 17 16 15 45 45 H 0.97003 * 120.00351 * 180.02562 * 23 22 20 46 46 H 1.07995 * 120.06277 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0061 5 6 4.7899 1.5007 -0.0143 6 6 3.6142 -0.7155 -0.0034 7 6 4.8350 -1.5991 -0.0085 8 6 2.3272 -1.1331 0.0036 9 6 1.8599 -2.5658 0.0083 10 6 1.7089 -3.0483 1.4524 11 6 1.2423 -4.4812 1.4570 12 8 1.0454 -5.0559 0.4125 13 8 1.0395 -5.1175 2.6218 14 6 0.5146 -6.3696 2.5578 15 6 -0.8157 -6.5830 2.8922 16 6 -1.3522 -7.8546 2.8220 17 6 -0.5637 -8.9191 2.4299 18 6 0.7695 -8.7123 2.0998 19 8 1.5445 -9.7584 1.7150 20 6 2.8555 -9.5103 1.5212 21 1 3.2301 -8.4998 1.5925 22 6 3.7226 -10.5523 1.2303 23 7 3.2663 -11.7830 1.1430 24 14 5.5389 -10.2084 0.9611 25 1 6.1133 -9.5948 2.1854 26 1 6.2453 -11.4810 0.6665 27 1 5.7019 -9.2760 -0.1831 28 6 1.3086 -7.4349 2.1642 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8918 -0.5105 32 1 5.0772 1.7135 -1.0441 33 1 4.5592 2.4342 0.4989 34 1 5.6122 0.9990 0.4959 35 1 5.1238 -1.8137 -1.0374 36 1 5.6540 -1.0902 0.5001 37 1 4.6103 -2.5322 0.5080 38 1 2.5908 -3.1879 -0.5082 39 1 0.8986 -2.6361 -0.5007 40 1 0.9780 -2.4261 1.9687 41 1 2.6702 -2.9780 1.9613 42 1 -1.4333 -5.7535 3.2036 43 1 -2.3885 -8.0173 3.0787 44 1 -0.9841 -9.9126 2.3806 45 1 3.8730 -12.5121 0.9399 46 1 2.3448 -7.2714 1.9075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = -11.355227 kcal Electronic energy + Delta-G solvation = -29020.015702 eV Core-core repulsion = 24877.580818 eV Total energy + Delta-G solvation = -4142.434885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66359 -40.83670 -38.80939 -37.17501 -35.71632 -34.91885 -33.90966 -32.30881 -31.34568 -29.84693 -29.65050 -28.91662 -27.56492 -26.01214 -25.41577 -24.27291 -22.33001 -21.61231 -20.33737 -19.81772 -19.60337 -18.27088 -17.86828 -17.06125 -16.55035 -16.15745 -16.09337 -15.73992 -15.14429 -14.82321 -14.36131 -14.19449 -14.16706 -13.90028 -13.65372 -13.56315 -13.47766 -13.36740 -13.06976 -12.91775 -12.83556 -12.60496 -12.48480 -12.28634 -12.11455 -11.95047 -11.84748 -11.49551 -11.29880 -11.22529 -11.05278 -10.83541 -10.61033 -10.52334 -10.32220 -10.25832 -9.52717 -9.28839 -8.87349 -8.50429 -8.14134 -7.34506 -6.48115 -4.07517 1.58136 1.79779 2.21611 2.23007 2.38823 2.46655 3.11114 3.11449 3.15401 3.21462 3.94244 4.17615 4.33654 4.47442 4.66974 4.72502 4.78295 4.83019 4.88202 5.01407 5.01807 5.04579 5.11910 5.19456 5.20863 5.35163 5.41323 5.44194 5.47091 5.55670 5.61246 5.69510 5.79325 5.89917 6.01248 6.01529 6.08115 6.17488 6.35447 6.49100 6.57241 6.77238 6.92254 7.02013 7.10044 7.14859 7.33499 7.51083 7.61313 7.95494 8.20241 8.96824 9.63537 10.69396 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.002638 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.374476 B =10609.791000 C =12760.258659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.084 3.916 3 N -0.301 5.301 4 N -0.376 5.376 5 C 0.102 3.898 6 C 0.092 3.908 7 C -0.097 4.097 8 C -0.236 4.236 9 C -0.028 4.028 10 C -0.103 4.103 11 C 0.451 3.549 12 O -0.484 6.484 13 O -0.299 6.299 14 C 0.121 3.879 15 C -0.213 4.213 16 C -0.065 4.065 17 C -0.188 4.188 18 C 0.163 3.837 19 O -0.171 6.171 20 C -0.393 4.393 21 H 0.090 0.910 22 C 0.042 3.958 23 N -0.860 5.860 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.230 4.230 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 23.781 -0.390 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.123 5.123 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.035 4.035 7 C -0.155 4.155 8 C -0.247 4.247 9 C -0.066 4.066 10 C -0.141 4.141 11 C 0.294 3.706 12 O -0.368 6.368 13 O -0.214 6.214 14 C 0.081 3.919 15 C -0.232 4.232 16 C -0.083 4.083 17 C -0.207 4.207 18 C 0.109 3.891 19 O -0.074 6.074 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.163 4.163 23 N -0.495 5.495 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.250 4.250 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.170 24.476 -0.826 24.518 hybrid contribution 1.111 -0.578 -0.123 1.258 sum 2.281 23.898 -0.949 24.025 Atomic orbital electron populations 1.20225 0.86638 1.03466 1.03142 1.22230 0.96865 0.90205 0.98928 1.77316 0.86143 1.22513 1.26313 1.48280 1.05557 1.04140 1.57854 1.21817 0.83957 0.94884 1.03280 1.20903 0.97007 0.84499 1.01107 1.20526 0.92760 0.98500 1.03706 1.19580 0.91162 0.95847 1.18109 1.19654 1.02981 0.89996 0.94000 1.21391 1.04053 0.88381 1.00266 1.24108 0.74992 0.89592 0.81914 1.90730 1.46090 1.67389 1.32619 1.84514 1.74144 1.28187 1.34582 1.18216 0.91897 0.81027 1.00803 1.20499 0.93158 0.97894 1.11636 1.20486 0.98521 0.91455 0.97886 1.20324 0.92358 0.99632 1.08368 1.19128 0.91317 0.87169 0.91473 1.83997 1.20243 1.30213 1.72899 1.21265 0.80169 0.95375 1.50084 0.89236 1.25278 1.00205 0.94349 0.96476 1.70022 1.36078 0.99112 1.44264 0.85791 0.80353 0.78150 0.79245 1.19416 1.20149 1.19407 1.21192 1.01433 0.92402 1.09955 0.90359 0.90953 0.90117 0.90846 0.89346 0.89533 0.89891 0.91059 0.89231 0.90256 0.90018 0.87715 0.87976 0.86764 0.86015 0.85910 0.91861 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.26 36.01 0.37 -0.26 16 2 C 0.08 0.93 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -3.63 12.58 33.67 0.42 -3.21 16 4 N -0.38 -3.76 4.01 -63.88 -0.26 -4.02 16 5 C 0.10 0.58 11.27 59.85 0.67 1.25 16 6 C 0.09 0.90 6.93 -82.26 -0.57 0.33 16 7 C -0.10 -0.67 9.72 36.00 0.35 -0.32 16 8 C -0.24 -2.54 5.35 -105.05 -0.56 -3.10 16 9 C -0.03 -0.30 4.41 -27.88 -0.12 -0.43 16 10 C -0.10 -1.13 5.79 -27.88 -0.16 -1.29 16 11 C 0.45 7.22 7.82 36.01 0.28 7.50 16 12 O -0.48 -9.44 15.41 -18.75 -0.29 -9.72 16 13 O -0.30 -5.32 10.03 -23.60 -0.24 -5.55 16 14 C 0.12 2.48 5.18 -39.24 -0.20 2.27 16 15 C -0.21 -3.91 9.99 -39.38 -0.39 -4.30 16 16 C -0.07 -1.17 10.03 -39.63 -0.40 -1.57 16 17 C -0.19 -3.99 9.99 -39.37 -0.39 -4.38 16 18 C 0.16 4.06 6.65 -39.13 -0.26 3.80 16 19 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 20 C -0.39 -11.15 9.49 30.88 0.29 -10.86 16 21 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 22 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 23 N -0.86 -25.21 13.67 55.48 0.76 -24.46 16 24 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 C -0.23 -5.36 8.58 -39.25 -0.34 -5.70 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.61 7.25 -51.93 -0.38 0.24 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.30 7.05 -51.92 -0.37 -0.07 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.36 7.08 -51.92 -0.37 -0.01 16 37 H 0.09 0.64 7.77 -51.93 -0.40 0.24 16 38 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 39 H 0.08 0.91 7.20 -51.93 -0.37 0.54 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -35.66 394.92 -7.02 -42.68 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.22 Total: 3.36 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.12 Total: -15.66 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.93 Total: -31.68 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.53 Total: -20.20 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.66 -7.02 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.323 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds