Wall clock time and date at job start Wed Apr 1 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30840 * 125.89799 * 2 1 4 4 N 1.40086 * 108.20059 * 180.26365 * 3 2 1 5 5 C 1.46497 * 126.03455 * 179.70199 * 4 3 2 6 6 C 1.34953 * 107.92757 * 359.71431 * 4 3 2 7 7 C 1.50698 * 126.12751 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74524 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.04047 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.46986 * 89.99759 * 9 8 6 11 11 C 1.50701 * 109.46986 * 180.02562 * 10 9 8 12 12 O 1.20832 * 120.00056 * 359.72830 * 11 10 9 13 13 O 1.34265 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.35917 * 117.00061 * 174.73710 * 13 11 10 15 15 C 1.38822 * 120.02433 * 255.02282 * 14 13 11 16 16 C 1.38193 * 120.08320 * 179.71985 * 15 14 13 17 17 C 1.38152 * 120.12348 * 0.55294 * 16 15 14 18 18 C 1.38898 * 120.03864 * 359.72393 * 17 16 15 19 19 O 1.35751 * 120.04062 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00495 * 185.61658 * 19 18 17 21 21 H 1.08001 * 119.99319 * 354.93808 * 20 19 18 22 22 C 1.38646 * 120.00064 * 174.93602 * 20 19 18 23 23 N 1.31551 * 120.00432 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99693 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47042 * 60.00409 * 24 22 20 26 26 H 1.48498 * 109.47104 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47602 * 300.00535 * 24 22 20 28 28 C 1.38575 * 120.01894 * 75.29573 * 14 13 11 29 29 H 1.09001 * 109.46697 * 270.20919 * 1 2 3 30 30 H 1.09000 * 109.47089 * 30.20760 * 1 2 3 31 31 H 1.08993 * 109.47146 * 150.21286 * 1 2 3 32 32 H 1.09002 * 109.47033 * 270.01821 * 5 4 3 33 33 H 1.09002 * 109.47320 * 30.01991 * 5 4 3 34 34 H 1.09007 * 109.47128 * 150.02231 * 5 4 3 35 35 H 1.08997 * 109.47020 * 270.03180 * 7 6 4 36 36 H 1.09009 * 109.46928 * 30.02739 * 7 6 4 37 37 H 1.08993 * 109.47239 * 150.02951 * 7 6 4 38 38 H 1.08995 * 109.46663 * 329.99749 * 9 8 6 39 39 H 1.08997 * 109.47090 * 210.00201 * 9 8 6 40 40 H 1.09001 * 109.46770 * 60.00654 * 10 9 8 41 41 H 1.08995 * 109.47063 * 300.00233 * 10 9 8 42 42 H 1.07998 * 119.95709 * 359.97438 * 15 14 13 43 43 H 1.07994 * 119.93646 * 180.25052 * 16 15 14 44 44 H 1.07993 * 119.97997 * 179.69671 * 17 16 15 45 45 H 0.97003 * 120.00351 * 180.02562 * 23 22 20 46 46 H 1.07995 * 120.06277 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6340 -0.0061 5 6 4.7899 1.5007 -0.0143 6 6 3.6142 -0.7155 -0.0034 7 6 4.8350 -1.5991 -0.0085 8 6 2.3272 -1.1331 0.0036 9 6 1.8599 -2.5658 0.0083 10 6 1.7089 -3.0483 1.4524 11 6 1.2423 -4.4812 1.4570 12 8 1.0454 -5.0559 0.4125 13 8 1.0395 -5.1175 2.6218 14 6 0.5146 -6.3696 2.5578 15 6 -0.8157 -6.5830 2.8922 16 6 -1.3522 -7.8546 2.8220 17 6 -0.5637 -8.9191 2.4299 18 6 0.7695 -8.7123 2.0998 19 8 1.5445 -9.7584 1.7150 20 6 2.8555 -9.5103 1.5212 21 1 3.2301 -8.4998 1.5925 22 6 3.7226 -10.5523 1.2303 23 7 3.2663 -11.7830 1.1430 24 14 5.5389 -10.2084 0.9611 25 1 6.1133 -9.5948 2.1854 26 1 6.2453 -11.4810 0.6665 27 1 5.7019 -9.2760 -0.1831 28 6 1.3086 -7.4349 2.1642 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8918 -0.5105 32 1 5.0772 1.7135 -1.0441 33 1 4.5592 2.4342 0.4989 34 1 5.6122 0.9990 0.4959 35 1 5.1238 -1.8137 -1.0374 36 1 5.6540 -1.0902 0.5001 37 1 4.6103 -2.5322 0.5080 38 1 2.5908 -3.1879 -0.5082 39 1 0.8986 -2.6361 -0.5007 40 1 0.9780 -2.4261 1.9687 41 1 2.6702 -2.9780 1.9613 42 1 -1.4333 -5.7535 3.2036 43 1 -2.3885 -8.0173 3.0787 44 1 -0.9841 -9.9126 2.3806 45 1 3.8730 -12.5121 0.9399 46 1 2.3448 -7.2714 1.9075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:30 Heat of formation + Delta-G solvation = -32.329408 kcal Electronic energy + Delta-G solvation = -29020.925211 eV Core-core repulsion = 24877.580818 eV Total energy + Delta-G solvation = -4143.344393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47108 -42.20243 -40.56153 -38.72827 -37.34192 -35.72324 -34.67192 -34.33076 -32.16664 -31.27523 -30.62245 -30.36374 -28.39921 -27.44122 -26.68450 -25.26634 -23.71392 -23.25123 -21.73806 -20.54139 -20.35067 -20.09092 -19.49821 -18.40944 -17.67756 -17.49367 -17.14684 -16.85900 -16.63602 -16.20677 -16.05544 -15.61282 -15.28138 -15.10143 -14.77235 -14.65310 -14.48928 -14.26436 -14.13211 -13.99311 -13.71465 -13.60606 -13.47675 -13.25657 -13.10091 -12.98181 -12.92369 -12.75131 -12.72645 -12.63840 -12.46911 -12.18735 -12.07896 -11.86288 -11.75676 -11.44577 -11.35779 -10.84330 -10.00628 -9.78925 -9.25282 -9.13571 -8.51697 -6.21246 0.17575 0.56712 0.86354 1.10670 1.31487 1.42140 1.48327 1.57152 1.65298 1.92212 2.14585 2.75137 3.07191 3.39159 3.53227 3.66511 3.71047 4.00600 4.02867 4.06531 4.15604 4.21903 4.30187 4.33528 4.37962 4.43890 4.46553 4.55635 4.61347 4.65506 4.70802 4.73496 4.81707 4.87112 4.96684 5.01582 5.02960 5.08240 5.15082 5.22460 5.30688 5.39610 5.46298 5.53584 5.57939 5.76333 5.95030 6.02834 6.13795 6.76525 6.79860 6.91834 7.67490 8.70514 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.002638 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.374476 B =10609.791000 C =12760.258659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.073 3.927 3 N -0.335 5.335 4 N -0.380 5.380 5 C 0.092 3.908 6 C 0.093 3.907 7 C -0.097 4.097 8 C -0.255 4.255 9 C -0.019 4.019 10 C -0.090 4.090 11 C 0.453 3.547 12 O -0.523 6.523 13 O -0.296 6.296 14 C 0.114 3.886 15 C -0.192 4.192 16 C -0.048 4.048 17 C -0.197 4.197 18 C 0.126 3.874 19 O -0.221 6.221 20 C -0.419 4.419 21 H 0.093 0.907 22 C -0.017 4.017 23 N -0.914 5.914 24 Si 1.015 2.985 25 H -0.255 1.255 26 H -0.266 1.266 27 H -0.260 1.260 28 C -0.248 4.248 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.129 0.871 45 H 0.275 0.725 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 26.554 0.625 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.158 5.158 4 N -0.162 5.162 5 C -0.048 4.048 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.266 4.266 9 C -0.057 4.057 10 C -0.127 4.127 11 C 0.298 3.702 12 O -0.410 6.410 13 O -0.212 6.212 14 C 0.073 3.927 15 C -0.211 4.211 16 C -0.066 4.066 17 C -0.216 4.216 18 C 0.075 3.925 19 O -0.128 6.128 20 C -0.494 4.494 21 H 0.110 0.890 22 C -0.215 4.215 23 N -0.552 5.552 24 Si 0.833 3.167 25 H -0.179 1.179 26 H -0.190 1.190 27 H -0.184 1.184 28 C -0.268 4.268 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.175 0.825 43 H 0.192 0.808 44 H 0.147 0.853 45 H 0.084 0.916 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.007 27.316 0.212 27.335 hybrid contribution 0.932 -1.178 -0.373 1.548 sum 1.939 26.138 -0.161 26.210 Atomic orbital electron populations 1.20307 0.85301 1.03812 1.04037 1.22630 0.97973 0.90107 0.98482 1.77256 0.87376 1.23437 1.27715 1.48627 1.05800 1.04684 1.57058 1.22155 0.83276 0.94921 1.04442 1.21330 0.97660 0.84865 0.99723 1.20626 0.92351 0.98078 1.04417 1.19597 0.91787 0.95412 1.19796 1.19514 1.02364 0.90140 0.93708 1.21537 1.05473 0.84765 1.00906 1.25136 0.73567 0.90798 0.80683 1.90727 1.47944 1.68519 1.33788 1.84547 1.74241 1.26802 1.35600 1.18417 0.92623 0.81477 1.00151 1.21105 0.92325 0.99386 1.08296 1.21072 1.00379 0.90035 0.95106 1.20697 0.91291 1.01394 1.08193 1.19722 0.92585 0.87247 0.92956 1.83956 1.20737 1.32199 1.75865 1.21675 0.80810 0.95966 1.50992 0.89011 1.26560 1.05395 0.93844 0.95736 1.70154 1.38096 1.00297 1.46632 0.84715 0.73582 0.78572 0.79783 1.17937 1.18980 1.18397 1.21182 1.01159 0.93098 1.11335 0.89107 0.90696 0.89669 0.89812 0.88979 0.87043 0.89267 0.88775 0.89450 0.91354 0.90661 0.85128 0.85992 0.82463 0.80779 0.85286 0.91560 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.26 71.24 0.73 -0.43 16 2 C 0.07 1.54 7.22 43.10 0.31 1.85 16 3 N -0.33 -7.74 12.58 -47.38 -0.60 -8.33 16 4 N -0.38 -6.95 4.01 -356.02 -1.43 -8.38 16 5 C 0.09 0.84 11.27 127.77 1.44 2.28 16 6 C 0.09 1.65 6.93 41.40 0.29 1.94 16 7 C -0.10 -1.13 9.72 71.24 0.69 -0.44 16 8 C -0.25 -5.13 5.35 -20.14 -0.11 -5.24 16 9 C -0.02 -0.38 4.41 29.85 0.13 -0.25 16 10 C -0.09 -1.76 5.79 29.85 0.17 -1.58 16 11 C 0.45 13.89 7.82 71.24 0.56 14.44 16 12 O -0.52 -20.37 15.41 21.94 0.34 -20.03 16 13 O -0.30 -10.03 10.03 4.60 0.05 -9.98 16 14 C 0.11 4.53 5.18 22.49 0.12 4.65 16 15 C -0.19 -6.36 9.99 22.40 0.22 -6.14 16 16 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 17 C -0.20 -8.30 9.99 22.41 0.22 -8.07 16 18 C 0.13 6.51 6.65 22.56 0.15 6.66 16 19 O -0.22 -13.62 9.76 -22.77 -0.22 -13.84 16 20 C -0.42 -25.16 9.49 67.92 0.64 -24.52 16 21 H 0.09 5.22 5.20 -2.91 -0.02 5.21 16 22 C -0.02 -0.98 5.49 84.83 0.47 -0.51 16 23 N -0.91 -56.30 13.67 21.61 0.30 -56.01 16 24 Si 1.01 43.32 29.55 68.60 2.03 45.34 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 C -0.25 -11.89 8.58 22.49 0.19 -11.70 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.19 7.25 -2.39 -0.02 1.17 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.43 7.05 -2.38 -0.02 0.42 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.66 7.08 -2.38 -0.02 0.64 16 37 H 0.09 1.08 7.77 -2.39 -0.02 1.06 16 38 H 0.07 1.54 7.73 -2.39 -0.02 1.52 16 39 H 0.07 1.63 7.20 -2.39 -0.02 1.61 16 40 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.11 5.64 5.64 -2.91 -0.02 5.62 16 Total: -1.00 -83.64 394.92 7.92 -75.72 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.01 Total: 23.91 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 6.46 Total: -28.41 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.73 Total: -72.72 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: 0.16 Total: -43.85 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -83.64 7.92 -75.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.390 kcal (2) G-P(sol) polarization free energy of solvation -83.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds