Wall clock time and date at job start Wed Apr 1 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.86235 * 2 1 4 4 O 1.21279 * 120.00097 * 92.65143 * 3 2 1 5 5 N 1.34776 * 119.99758 * 272.65389 * 3 2 1 6 6 C 1.47020 * 125.65281 * 359.95767 * 5 3 2 7 7 C 1.54316 * 107.27568 * 178.97789 * 6 5 3 8 8 C 1.55158 * 102.94139 * 337.80546 * 7 6 5 9 9 O 1.42900 * 111.00452 * 277.42884 * 8 7 6 10 10 C 1.50703 * 111.03898 * 153.59019 * 8 7 6 11 11 H 1.07997 * 119.99656 * 247.78559 * 10 8 7 12 12 C 1.37872 * 119.99729 * 67.78583 * 10 8 7 13 13 N 1.31510 * 120.00537 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99780 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47175 * 59.99887 * 14 12 10 16 16 H 1.48499 * 109.47223 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46990 * 299.99877 * 14 12 10 18 18 C 1.47422 * 125.64527 * 180.02562 * 5 3 2 19 19 C 1.54733 * 111.00186 * 123.81984 * 2 1 3 20 20 C 1.51693 * 102.55042 * 93.90564 * 19 2 1 21 21 C 1.47645 * 125.86600 * 195.34025 * 20 19 2 22 22 C 1.39613 * 120.15010 * 359.76099 * 21 20 19 23 23 C 1.37947 * 119.84722 * 179.74061 * 22 21 20 24 24 C 1.38359 * 120.15222 * 0.55226 * 23 22 21 25 25 C 1.38357 * 120.29759 * 359.69613 * 24 23 22 26 26 C 1.37948 * 120.15337 * 0.02638 * 25 24 23 27 27 N 1.29083 * 108.26710 * 15.39264 * 20 19 2 28 28 O 1.41392 * 112.87459 * 0.31775 * 27 20 19 29 29 H 1.09004 * 109.46633 * 59.30153 * 1 2 3 30 30 H 1.08992 * 109.47528 * 179.29610 * 1 2 3 31 31 H 1.08997 * 109.47275 * 299.30611 * 1 2 3 32 32 H 1.09000 * 109.88493 * 59.55540 * 6 5 3 33 33 H 1.09005 * 110.00581 * 298.46850 * 6 5 3 34 34 H 1.09003 * 110.72312 * 219.44382 * 7 6 5 35 35 H 1.08999 * 110.87697 * 96.23821 * 7 6 5 36 36 H 0.96697 * 114.00334 * 292.19264 * 9 8 7 37 37 H 0.97000 * 120.00456 * 179.97438 * 13 12 10 38 38 H 1.08998 * 110.36873 * 85.25268 * 18 5 3 39 39 H 1.09005 * 110.36491 * 322.92676 * 18 5 3 40 40 H 1.08997 * 110.79336 * 212.16939 * 19 2 1 41 41 H 1.08999 * 110.79898 * 335.64270 * 19 2 1 42 42 H 1.08001 * 120.07072 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.92979 * 180.26839 * 23 22 21 44 44 H 1.07996 * 119.85761 * 179.72112 * 24 23 22 45 45 H 1.07998 * 119.92802 * 180.02562 * 25 24 23 46 46 H 1.08005 * 120.08184 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4082 0.0000 4 8 2.3281 1.9576 1.0492 5 7 2.2562 2.0571 -1.1660 6 6 1.9832 1.5125 -2.5040 7 6 2.3247 2.6165 -3.5266 8 6 2.2338 3.9140 -2.6806 9 8 0.8807 4.3599 -2.5704 10 6 3.1113 4.9966 -3.2543 11 1 3.9830 5.3297 -2.7108 12 6 2.8011 5.5616 -4.4731 13 7 1.7392 5.1564 -5.1347 14 14 3.8891 6.9031 -5.1846 15 1 5.2648 6.3766 -5.3730 16 1 3.3426 7.3411 -6.4940 17 1 3.9245 8.0583 -4.2521 18 6 2.7728 3.4302 -1.3109 19 6 2.0846 -0.8040 1.2001 20 6 2.2969 -2.1824 0.6035 21 6 2.5108 -3.4302 1.3632 22 6 2.5354 -3.4060 2.7589 23 6 2.7304 -4.5764 3.4626 24 6 2.9128 -5.7706 2.7881 25 6 2.8948 -5.8009 1.4050 26 6 2.6950 -4.6389 0.6890 27 7 2.2594 -2.0769 -0.6824 28 8 2.0461 -0.7491 -1.1189 29 1 -0.3633 0.5247 -0.8837 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3634 0.5030 0.8961 32 1 0.9302 1.2432 -2.5869 33 1 2.6051 0.6355 -2.6837 34 1 1.5945 2.6319 -4.3358 35 1 3.3321 2.4829 -3.9206 36 1 0.5004 4.6722 -3.4028 37 1 1.5208 5.5542 -5.9920 38 1 3.8628 3.4273 -1.3115 39 1 2.3947 4.0644 -0.5090 40 1 3.0285 -0.3823 1.5454 41 1 1.3567 -0.8411 2.0106 42 1 2.3974 -2.4738 3.2865 43 1 2.7454 -4.5598 4.5423 44 1 3.0696 -6.6833 3.3437 45 1 3.0373 -6.7365 0.8847 46 1 2.6807 -4.6639 -0.3907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857296321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:06 Heat of formation + Delta-G solvation = -31.581873 kcal Electronic energy + Delta-G solvation = -30201.096733 eV Core-core repulsion = 26057.784755 eV Total energy + Delta-G solvation = -4143.311978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99467 -39.50391 -38.74338 -37.23857 -34.49367 -33.86212 -32.47527 -32.14791 -31.35743 -30.46688 -29.75472 -28.28240 -27.55255 -25.49417 -23.91849 -23.51886 -22.68170 -21.56666 -20.31777 -19.74424 -19.05136 -17.58948 -17.15761 -16.74684 -16.21444 -15.85917 -15.45792 -15.29744 -15.01320 -14.93755 -14.66583 -14.33618 -13.96386 -13.83341 -13.73785 -13.64042 -13.24200 -12.99874 -12.75536 -12.51001 -12.33410 -12.08837 -12.01404 -11.75414 -11.72093 -11.63849 -11.58510 -11.34708 -11.22283 -10.88203 -10.80459 -10.58005 -10.50614 -10.27337 -10.02716 -9.50729 -9.39658 -9.36154 -8.82887 -8.68936 -8.22405 -8.02614 -6.30535 -4.38408 0.38849 1.00525 1.98366 2.66042 2.91307 3.21291 3.24863 3.26297 3.31536 3.46644 3.88118 4.10262 4.25343 4.28666 4.56735 4.58586 4.66226 4.71626 4.78092 4.97474 4.99836 5.14391 5.20927 5.35832 5.39323 5.52032 5.58062 5.59867 5.61487 5.69508 5.80067 5.91157 6.01815 6.05265 6.06451 6.09271 6.10890 6.37271 6.41725 6.51332 6.61214 6.88412 6.95200 7.17555 7.31507 7.32744 7.72623 7.95614 8.02708 8.40687 8.63287 9.30281 9.46178 10.77220 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.002302 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.704741 B =12162.641341 C =12374.485799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 C 0.541 3.459 4 O -0.547 6.547 5 N -0.589 5.589 6 C 0.102 3.898 7 C -0.139 4.139 8 C 0.250 3.750 9 O -0.585 6.585 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.117 3.883 19 C -0.124 4.124 20 C 0.121 3.879 21 C -0.038 4.038 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.080 4.080 27 N -0.282 5.282 28 O -0.171 6.171 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.386 0.614 37 H 0.270 0.730 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -20.229 12.482 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 C 0.325 3.675 4 O -0.426 6.426 5 N -0.319 5.319 6 C -0.021 4.021 7 C -0.178 4.178 8 C 0.209 3.791 9 O -0.395 6.395 10 C -0.574 4.574 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.004 4.004 19 C -0.163 4.163 20 C -0.068 4.068 21 C -0.039 4.039 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.100 4.100 27 N -0.022 5.022 28 O -0.190 6.190 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.545 -20.467 12.311 23.890 hybrid contribution 0.316 1.327 -0.465 1.442 sum -0.229 -19.139 11.847 22.510 Atomic orbital electron populations 1.22076 0.91060 1.03455 1.04537 1.23111 0.96652 0.91735 0.87050 1.19263 0.78763 0.86040 0.83405 1.90696 1.53027 1.68083 1.30779 1.48542 1.61205 1.16367 1.05785 1.22269 1.00189 0.97705 0.81921 1.23221 1.02064 0.95080 0.97424 1.19573 0.81590 0.90202 0.87728 1.86082 1.28470 1.85539 1.39439 1.21424 1.11076 1.20523 1.04387 0.91680 1.24989 0.95273 0.96556 0.96182 1.69548 1.25984 1.42662 1.15494 0.86444 0.80499 0.81720 0.78134 1.20023 1.21091 1.19990 1.22485 0.97776 0.80197 0.99932 1.22813 1.04852 0.89307 0.99357 1.24268 0.95572 0.94598 0.92394 1.17824 1.04086 0.89539 0.92459 1.21300 0.97833 0.99142 0.92364 1.21102 1.00450 0.92240 1.00275 1.21362 0.98070 0.98222 0.94535 1.21141 1.00520 0.98217 0.94270 1.21395 0.96507 0.91330 1.00759 1.78383 1.12107 0.98920 1.12778 1.91409 1.82751 1.14524 1.30364 0.90183 0.91122 0.90123 0.92382 0.91274 0.89834 0.91317 0.76168 0.91979 0.90823 0.90909 0.86939 0.87214 0.85069 0.85272 0.85623 0.85358 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.95 37.16 0.33 -1.72 16 2 C 0.06 0.90 0.99 -90.86 -0.09 0.81 16 3 C 0.54 10.45 6.79 -10.98 -0.07 10.37 16 4 O -0.55 -11.64 16.50 5.56 0.09 -11.55 16 5 N -0.59 -12.15 3.33 -170.51 -0.57 -12.72 16 6 C 0.10 2.00 5.67 -3.07 -0.02 1.98 16 7 C -0.14 -3.08 5.64 -24.90 -0.14 -3.22 16 8 C 0.25 6.08 0.89 -89.61 -0.08 6.00 16 9 O -0.58 -15.04 13.18 -35.23 -0.46 -15.50 16 10 C -0.54 -13.93 8.25 -34.44 -0.28 -14.22 16 11 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 12 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 13 N -0.90 -23.12 10.79 55.43 0.60 -22.53 16 14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.12 2.66 6.08 -2.52 -0.02 2.64 16 19 C -0.12 -1.57 5.02 -26.48 -0.13 -1.70 16 20 C 0.12 1.50 7.16 -79.42 -0.57 0.93 16 21 C -0.04 -0.38 5.87 -105.03 -0.62 -1.00 16 22 C -0.09 -0.69 9.61 -39.18 -0.38 -1.07 16 23 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 24 C -0.10 -0.65 10.04 -39.49 -0.40 -1.04 16 25 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 26 C -0.08 -0.74 9.69 -39.17 -0.38 -1.12 16 27 N -0.28 -4.18 12.12 35.30 0.43 -3.75 16 28 O -0.17 -2.84 9.02 -11.37 -0.10 -2.94 16 29 H 0.08 1.15 7.60 -51.93 -0.39 0.76 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.10 7.60 -51.93 -0.39 0.71 16 33 H 0.07 1.30 6.66 -51.93 -0.35 0.95 16 34 H 0.08 1.92 7.85 -51.93 -0.41 1.51 16 35 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 36 H 0.39 10.01 6.93 45.56 0.32 10.33 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.07 1.62 8.02 -51.93 -0.42 1.20 16 39 H 0.07 1.72 8.04 -51.93 -0.42 1.31 16 40 H 0.11 1.50 7.62 -51.93 -0.40 1.10 16 41 H 0.11 1.10 7.74 -51.93 -0.40 0.70 16 42 H 0.13 0.86 7.38 -52.49 -0.39 0.48 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 1.25 7.84 -52.48 -0.41 0.84 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -29.77 379.62 -8.78 -38.54 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.73 Total: 12.63 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.73 Total: -3.07 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.46 Total: -38.99 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.48 Total: -30.00 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.77 -8.78 -38.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857296321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.963 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds