Wall clock time and date at job start Wed Apr 1 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 110.86068 * 2 1 4 4 O 1.21286 * 119.99730 * 266.10834 * 3 2 1 5 5 N 1.34776 * 120.00107 * 86.10247 * 3 2 1 6 6 C 1.47423 * 125.64724 * 185.17665 * 5 3 2 7 7 C 1.54913 * 104.83088 * 155.90702 * 6 5 3 8 8 C 1.55162 * 101.57874 * 37.00992 * 7 6 5 9 9 O 1.42901 * 110.72102 * 83.03893 * 8 7 6 10 10 C 1.50700 * 110.71582 * 206.13290 * 8 7 6 11 11 H 1.08001 * 119.99866 * 122.27059 * 10 8 7 12 12 C 1.37876 * 120.00325 * 302.26245 * 10 8 7 13 13 N 1.31524 * 119.99775 * 4.70003 * 12 10 8 14 14 Si 1.86798 * 120.00521 * 184.69291 * 12 10 8 15 15 H 1.48506 * 109.46989 * 84.99686 * 14 12 10 16 16 H 1.48506 * 109.46789 * 325.00401 * 14 12 10 17 17 H 1.48497 * 109.47512 * 205.00268 * 14 12 10 18 18 C 1.47017 * 125.64798 * 5.21945 * 5 3 2 19 19 C 1.54738 * 111.00276 * 236.18029 * 2 1 3 20 20 C 1.51691 * 102.54859 * 217.64585 * 19 2 1 21 21 C 1.47645 * 125.86605 * 195.34440 * 20 19 2 22 22 C 1.39608 * 120.14956 * 359.75049 * 21 20 19 23 23 C 1.37956 * 119.84627 * 179.74221 * 22 21 20 24 24 C 1.38353 * 120.15162 * 0.56254 * 23 22 21 25 25 C 1.38356 * 120.30037 * 359.69554 * 24 23 22 26 26 C 1.37954 * 120.15012 * 0.02562 * 25 24 23 27 27 N 1.29087 * 108.26835 * 15.39568 * 20 19 2 28 28 O 1.41389 * 112.87382 * 0.31233 * 27 20 19 29 29 H 1.08998 * 109.47163 * 60.70399 * 1 2 3 30 30 H 1.08998 * 109.46967 * 180.70164 * 1 2 3 31 31 H 1.08999 * 109.46916 * 300.69968 * 1 2 3 32 32 H 1.08997 * 110.37039 * 37.06959 * 6 5 3 33 33 H 1.08999 * 110.36537 * 274.74776 * 6 5 3 34 34 H 1.08990 * 111.00747 * 278.93596 * 7 6 5 35 35 H 1.09003 * 111.03591 * 155.09526 * 7 6 5 36 36 H 0.96700 * 114.00348 * 58.75614 * 9 8 7 37 37 H 0.96995 * 119.99497 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.88442 * 61.60426 * 18 5 3 39 39 H 1.09001 * 109.88460 * 300.44189 * 18 5 3 40 40 H 1.09002 * 110.79243 * 335.90906 * 19 2 1 41 41 H 1.09000 * 110.79569 * 99.38319 * 19 2 1 42 42 H 1.08002 * 120.07562 * 0.02884 * 22 21 20 43 43 H 1.08002 * 119.92035 * 180.27668 * 23 22 21 44 44 H 1.07999 * 119.85339 * 179.71639 * 24 23 22 45 45 H 1.07996 * 119.92578 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.08015 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4082 0.0000 4 8 2.3492 1.9495 -1.0480 5 7 2.2325 2.0662 1.1645 6 6 2.6433 3.4751 1.3043 7 6 2.1012 3.9107 2.6886 8 6 2.3130 2.6216 3.5257 9 8 3.6554 2.5483 4.0103 10 6 1.3318 2.5604 4.6678 11 1 0.6621 1.7180 4.7598 12 6 1.2889 3.5796 5.5953 13 7 2.0383 4.6482 5.4332 14 14 0.1664 3.4430 7.0821 15 1 0.8579 2.6861 8.1565 16 1 -1.0791 2.7312 6.6982 17 1 -0.1720 4.8028 7.5735 18 6 2.0346 1.4975 2.5057 19 6 2.0846 -0.8040 -1.2001 20 6 3.2973 -1.4927 -0.6033 21 6 4.3877 -2.1362 -1.3628 22 6 4.3567 -2.1505 -2.7584 23 6 5.3815 -2.7488 -3.4619 24 6 6.4325 -3.3441 -2.7872 25 6 6.4668 -3.3383 -1.4041 26 6 5.4515 -2.7385 -0.6883 27 7 3.2115 -1.4205 0.6827 28 8 2.0463 -0.7490 1.1189 29 1 -0.3633 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 2.1977 4.0804 0.5149 33 1 3.7299 3.5577 1.2792 34 1 1.0441 4.1695 2.6304 35 1 2.6825 4.7393 3.0933 36 1 3.9156 3.2980 4.5628 37 1 2.0079 5.3654 6.0855 38 1 2.7288 0.6724 2.6647 39 1 1.0081 1.1466 2.6118 40 1 1.3549 -1.5362 -1.5457 41 1 2.3784 -0.1367 -2.0104 42 1 3.5346 -1.6900 -3.2863 43 1 5.3610 -2.7566 -4.5417 44 1 7.2300 -3.8151 -3.3427 45 1 7.2904 -3.8044 -0.8837 46 1 5.4796 -2.7343 0.3914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857296324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:15 Heat of formation + Delta-G solvation = -30.395997 kcal Electronic energy + Delta-G solvation = -30733.420745 eV Core-core repulsion = 26590.160191 eV Total energy + Delta-G solvation = -4143.260554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97672 -39.39022 -38.60043 -37.24273 -34.39802 -33.85971 -32.54156 -32.26596 -31.25214 -30.36101 -29.68589 -28.27127 -27.28098 -25.15694 -23.99530 -23.69612 -22.65420 -21.25536 -20.32434 -19.84721 -19.02831 -17.51749 -17.04789 -16.57901 -16.19966 -15.88237 -15.55712 -15.28923 -14.94580 -14.82216 -14.57112 -14.18770 -13.95021 -13.71410 -13.54337 -13.35442 -13.06266 -13.01965 -12.87914 -12.78228 -12.37872 -12.09262 -11.90250 -11.70860 -11.57921 -11.44978 -11.37442 -11.28970 -11.21422 -10.88280 -10.76834 -10.52086 -10.46353 -10.30850 -10.07288 -9.54572 -9.24090 -9.19032 -8.72147 -8.63926 -8.20124 -8.03165 -6.25601 -4.34578 0.51665 1.12488 2.10733 2.77498 2.93578 3.21695 3.28425 3.30016 3.35842 3.58430 3.87430 4.20154 4.26796 4.34875 4.64889 4.67895 4.70715 4.82562 4.92546 5.01181 5.11532 5.25624 5.29187 5.38746 5.42580 5.56095 5.62379 5.66132 5.72376 5.77565 5.85062 5.93845 6.04335 6.05404 6.16897 6.18654 6.22018 6.26067 6.54460 6.63275 6.71879 6.93151 6.98549 7.29528 7.32089 7.42488 7.74487 7.98245 8.08381 8.42072 8.68011 9.28391 9.37222 10.80433 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002843 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.915113 B = 9846.742037 C =10134.801009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 C 0.518 3.482 4 O -0.554 6.554 5 N -0.590 5.590 6 C 0.099 3.901 7 C -0.130 4.130 8 C 0.244 3.756 9 O -0.583 6.583 10 C -0.534 4.534 11 H 0.064 0.936 12 C 0.073 3.927 13 N -0.893 5.893 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.286 1.286 18 C 0.118 3.882 19 C -0.131 4.131 20 C 0.119 3.881 21 C -0.036 4.036 22 C -0.086 4.086 23 C -0.124 4.124 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.080 4.080 27 N -0.277 5.277 28 O -0.167 6.167 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.377 0.623 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -12.682 -15.824 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C 0.304 3.696 4 O -0.434 6.434 5 N -0.320 5.320 6 C -0.023 4.023 7 C -0.168 4.168 8 C 0.204 3.796 9 O -0.391 6.391 10 C -0.572 4.572 11 H 0.082 0.918 12 C -0.130 4.130 13 N -0.531 5.531 14 Si 0.729 3.271 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.212 1.212 18 C -0.004 4.004 19 C -0.170 4.170 20 C -0.071 4.071 21 C -0.037 4.037 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.099 4.099 27 N -0.016 5.016 28 O -0.187 6.187 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.226 0.774 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.354 -13.039 -15.455 20.496 hybrid contribution -1.047 0.937 0.532 1.502 sum 2.307 -12.102 -14.922 19.351 Atomic orbital electron populations 1.21790 0.89064 1.04076 1.04456 1.23130 0.97863 0.90538 0.87253 1.20014 0.78992 0.87347 0.83234 1.90647 1.52764 1.68959 1.31058 1.48603 1.63989 1.13135 1.06312 1.22507 0.99224 0.80724 0.99805 1.23305 1.01169 1.01046 0.91303 1.19502 0.81584 0.88463 0.90005 1.86183 1.31477 1.50286 1.71108 1.21456 1.19482 1.06481 1.09781 0.91806 1.24994 0.95475 0.94555 0.98017 1.69817 1.40247 1.07169 1.35895 0.86458 0.80782 0.77305 0.82569 1.20304 1.19805 1.21180 1.22293 1.01039 0.97660 0.79400 1.22931 0.94703 0.99129 1.00247 1.24276 0.94768 0.95700 0.92348 1.17819 0.93084 1.00354 0.92471 1.21263 0.98955 0.98065 0.92326 1.21079 0.94232 0.98686 1.00170 1.21342 0.98131 0.98291 0.94520 1.21141 0.98732 0.99967 0.94260 1.21421 0.92547 0.95100 1.00873 1.78455 1.01124 1.09253 1.12752 1.91408 1.36670 1.60311 1.30304 0.89983 0.90320 0.90064 0.91954 0.92158 0.91480 0.88977 0.77438 0.92332 0.90491 0.90990 0.87087 0.86279 0.85191 0.85341 0.85660 0.85342 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.95 37.16 0.33 -1.39 16 2 C 0.06 0.89 1.01 -90.85 -0.09 0.80 16 3 C 0.52 10.10 6.88 -10.99 -0.08 10.02 16 4 O -0.55 -11.64 16.11 5.55 0.09 -11.55 16 5 N -0.59 -12.38 3.33 -170.53 -0.57 -12.95 16 6 C 0.10 2.08 6.88 -2.53 -0.02 2.07 16 7 C -0.13 -2.94 5.22 -24.58 -0.13 -3.07 16 8 C 0.24 5.96 0.85 -89.94 -0.08 5.88 16 9 O -0.58 -14.83 13.08 -35.23 -0.46 -15.29 16 10 C -0.53 -13.91 8.21 -34.44 -0.28 -14.19 16 11 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 12 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 13 N -0.89 -23.04 10.70 55.43 0.59 -22.44 16 14 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.12 2.62 4.86 -3.07 -0.01 2.60 16 19 C -0.13 -1.68 5.32 -26.48 -0.14 -1.83 16 20 C 0.12 1.69 7.16 -79.42 -0.57 1.13 16 21 C -0.04 -0.44 5.87 -105.03 -0.62 -1.05 16 22 C -0.09 -0.83 9.61 -39.17 -0.38 -1.20 16 23 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 24 C -0.10 -0.81 10.04 -39.50 -0.40 -1.21 16 25 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 26 C -0.08 -0.91 9.69 -39.17 -0.38 -1.29 16 27 N -0.28 -4.75 12.12 35.30 0.43 -4.32 16 28 O -0.17 -3.00 9.05 -11.37 -0.10 -3.10 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 32 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 35 H 0.09 2.17 7.32 -51.93 -0.38 1.79 16 36 H 0.38 9.43 7.99 45.56 0.36 9.79 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.08 1.81 6.82 -51.93 -0.35 1.46 16 39 H 0.07 1.55 7.28 -51.93 -0.38 1.17 16 40 H 0.11 1.07 7.91 -51.93 -0.41 0.66 16 41 H 0.12 1.54 6.82 -51.93 -0.35 1.19 16 42 H 0.13 1.02 7.38 -52.49 -0.39 0.63 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 1.59 7.84 -52.48 -0.41 1.18 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -30.63 378.89 -8.68 -39.31 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.62 Total: 13.24 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.72 Total: -3.84 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.45 Total: -39.72 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.47 Total: -29.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.63 -8.68 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857296324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.915 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds