Wall clock time and date at job start Wed Apr 1 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 110.86068 * 2 1 4 4 O 1.21286 * 119.99730 * 266.10834 * 3 2 1 5 5 N 1.34776 * 120.00107 * 86.10247 * 3 2 1 6 6 C 1.47423 * 125.64724 * 185.17665 * 5 3 2 7 7 C 1.54913 * 104.83088 * 155.90702 * 6 5 3 8 8 C 1.55162 * 101.57874 * 37.00992 * 7 6 5 9 9 O 1.42901 * 110.72102 * 83.03893 * 8 7 6 10 10 C 1.50700 * 110.71582 * 206.13290 * 8 7 6 11 11 H 1.08001 * 119.99866 * 122.27059 * 10 8 7 12 12 C 1.37876 * 120.00325 * 302.26245 * 10 8 7 13 13 N 1.31524 * 119.99775 * 4.70003 * 12 10 8 14 14 Si 1.86798 * 120.00521 * 184.69291 * 12 10 8 15 15 H 1.48506 * 109.46989 * 84.99686 * 14 12 10 16 16 H 1.48506 * 109.46789 * 325.00401 * 14 12 10 17 17 H 1.48497 * 109.47512 * 205.00268 * 14 12 10 18 18 C 1.47017 * 125.64798 * 5.21945 * 5 3 2 19 19 C 1.54738 * 111.00276 * 236.18029 * 2 1 3 20 20 C 1.51691 * 102.54859 * 217.64585 * 19 2 1 21 21 C 1.47645 * 125.86605 * 195.34440 * 20 19 2 22 22 C 1.39608 * 120.14956 * 359.75049 * 21 20 19 23 23 C 1.37956 * 119.84627 * 179.74221 * 22 21 20 24 24 C 1.38353 * 120.15162 * 0.56254 * 23 22 21 25 25 C 1.38356 * 120.30037 * 359.69554 * 24 23 22 26 26 C 1.37954 * 120.15012 * 0.02562 * 25 24 23 27 27 N 1.29087 * 108.26835 * 15.39568 * 20 19 2 28 28 O 1.41389 * 112.87382 * 0.31233 * 27 20 19 29 29 H 1.08998 * 109.47163 * 60.70399 * 1 2 3 30 30 H 1.08998 * 109.46967 * 180.70164 * 1 2 3 31 31 H 1.08999 * 109.46916 * 300.69968 * 1 2 3 32 32 H 1.08997 * 110.37039 * 37.06959 * 6 5 3 33 33 H 1.08999 * 110.36537 * 274.74776 * 6 5 3 34 34 H 1.08990 * 111.00747 * 278.93596 * 7 6 5 35 35 H 1.09003 * 111.03591 * 155.09526 * 7 6 5 36 36 H 0.96700 * 114.00348 * 58.75614 * 9 8 7 37 37 H 0.96995 * 119.99497 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.88442 * 61.60426 * 18 5 3 39 39 H 1.09001 * 109.88460 * 300.44189 * 18 5 3 40 40 H 1.09002 * 110.79243 * 335.90906 * 19 2 1 41 41 H 1.09000 * 110.79569 * 99.38319 * 19 2 1 42 42 H 1.08002 * 120.07562 * 0.02884 * 22 21 20 43 43 H 1.08002 * 119.92035 * 180.27668 * 23 22 21 44 44 H 1.07999 * 119.85339 * 179.71639 * 24 23 22 45 45 H 1.07996 * 119.92578 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.08015 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4082 0.0000 4 8 2.3492 1.9495 -1.0480 5 7 2.2325 2.0662 1.1645 6 6 2.6433 3.4751 1.3043 7 6 2.1012 3.9107 2.6886 8 6 2.3130 2.6216 3.5257 9 8 3.6554 2.5483 4.0103 10 6 1.3318 2.5604 4.6678 11 1 0.6621 1.7180 4.7598 12 6 1.2889 3.5796 5.5953 13 7 2.0383 4.6482 5.4332 14 14 0.1664 3.4430 7.0821 15 1 0.8579 2.6861 8.1565 16 1 -1.0791 2.7312 6.6982 17 1 -0.1720 4.8028 7.5735 18 6 2.0346 1.4975 2.5057 19 6 2.0846 -0.8040 -1.2001 20 6 3.2973 -1.4927 -0.6033 21 6 4.3877 -2.1362 -1.3628 22 6 4.3567 -2.1505 -2.7584 23 6 5.3815 -2.7488 -3.4619 24 6 6.4325 -3.3441 -2.7872 25 6 6.4668 -3.3383 -1.4041 26 6 5.4515 -2.7385 -0.6883 27 7 3.2115 -1.4205 0.6827 28 8 2.0463 -0.7490 1.1189 29 1 -0.3633 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 2.1977 4.0804 0.5149 33 1 3.7299 3.5577 1.2792 34 1 1.0441 4.1695 2.6304 35 1 2.6825 4.7393 3.0933 36 1 3.9156 3.2980 4.5628 37 1 2.0079 5.3654 6.0855 38 1 2.7288 0.6724 2.6647 39 1 1.0081 1.1466 2.6118 40 1 1.3549 -1.5362 -1.5457 41 1 2.3784 -0.1367 -2.0104 42 1 3.5346 -1.6900 -3.2863 43 1 5.3610 -2.7566 -4.5417 44 1 7.2300 -3.8151 -3.3427 45 1 7.2904 -3.8044 -0.8837 46 1 5.4796 -2.7343 0.3914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857296324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:14 Heat of formation + Delta-G solvation = -50.142321 kcal Electronic energy + Delta-G solvation = -30734.277010 eV Core-core repulsion = 26590.160191 eV Total energy + Delta-G solvation = -4144.116819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24530 -40.56641 -39.75632 -38.94398 -36.17275 -34.99008 -34.28021 -33.68124 -31.97389 -31.55280 -31.10736 -30.11680 -28.30926 -27.03861 -25.44894 -24.58200 -23.49521 -22.69127 -21.78037 -21.31523 -20.38148 -19.18434 -18.55909 -17.65291 -17.59489 -17.10098 -16.95427 -16.80235 -16.39256 -16.07506 -15.97240 -15.59737 -14.99553 -14.91556 -14.81773 -14.40181 -14.37881 -14.33102 -14.11387 -13.95155 -13.74108 -13.43695 -13.35028 -13.28234 -13.22718 -13.03995 -12.72681 -12.48745 -12.41825 -12.29700 -12.25716 -12.18148 -12.01086 -11.79180 -11.47879 -11.26014 -10.76776 -10.61210 -10.17537 -9.93966 -9.75170 -9.60082 -8.22733 -6.38863 -0.33901 0.42958 1.16510 1.26867 1.42392 1.45192 1.53006 1.76008 1.91022 2.39016 2.82561 2.87916 3.00680 3.12459 3.21611 3.27601 3.75083 3.80735 4.00466 4.03075 4.03493 4.15108 4.20848 4.26678 4.35469 4.41859 4.43755 4.50651 4.53383 4.55210 4.61570 4.70469 4.75193 4.88601 4.95524 5.03584 5.08131 5.11486 5.16157 5.39676 5.42340 5.48056 5.50008 5.53245 5.75011 5.96758 6.06249 6.18244 6.39673 6.65700 6.83731 7.27346 7.35332 8.81953 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002843 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.915113 B = 9846.742037 C =10134.801009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.050 3.950 3 C 0.514 3.486 4 O -0.570 6.570 5 N -0.599 5.599 6 C 0.105 3.895 7 C -0.115 4.115 8 C 0.231 3.769 9 O -0.592 6.592 10 C -0.558 4.558 11 H 0.057 0.943 12 C 0.035 3.965 13 N -0.905 5.905 14 Si 0.960 3.040 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.280 1.280 18 C 0.138 3.862 19 C -0.123 4.123 20 C 0.133 3.867 21 C -0.069 4.069 22 C -0.085 4.085 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.129 4.129 26 C -0.100 4.100 27 N -0.326 5.326 28 O -0.194 6.194 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.375 0.625 37 H 0.270 0.730 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -14.014 -18.288 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.006 3.994 3 C 0.302 3.698 4 O -0.451 6.451 5 N -0.330 5.330 6 C -0.017 4.017 7 C -0.153 4.153 8 C 0.191 3.809 9 O -0.400 6.400 10 C -0.596 4.596 11 H 0.076 0.924 12 C -0.166 4.166 13 N -0.544 5.544 14 Si 0.785 3.215 15 H -0.204 1.204 16 H -0.195 1.195 17 H -0.205 1.205 18 C 0.015 3.985 19 C -0.162 4.162 20 C -0.055 4.055 21 C -0.071 4.071 22 C -0.105 4.105 23 C -0.140 4.140 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.120 4.120 27 N -0.068 5.068 28 O -0.212 6.212 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.166 0.834 43 H 0.179 0.821 44 H 0.176 0.824 45 H 0.165 0.835 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.066 -14.371 -17.931 23.182 hybrid contribution -0.815 1.296 1.168 1.926 sum 2.251 -13.075 -16.762 21.377 Atomic orbital electron populations 1.21860 0.86629 1.05876 1.04586 1.23345 0.99520 0.88208 0.88325 1.20829 0.77969 0.88784 0.82261 1.90620 1.53293 1.69930 1.31280 1.48657 1.64827 1.13030 1.06445 1.22379 0.98850 0.81388 0.99116 1.23050 1.00352 0.99926 0.92014 1.19697 0.80776 0.90024 0.90398 1.86180 1.32286 1.50359 1.71185 1.21655 1.20160 1.06715 1.11053 0.92449 1.25639 0.96700 0.94203 1.00081 1.69893 1.40714 1.07353 1.36427 0.85546 0.79159 0.77365 0.79393 1.20388 1.19456 1.20537 1.21959 1.00574 0.96240 0.79696 1.23025 0.94923 0.99454 0.98767 1.24824 0.95160 0.93715 0.91824 1.18003 0.93160 1.02261 0.93632 1.21549 1.00045 0.97748 0.91160 1.21517 0.93302 0.97327 1.01815 1.21791 0.98632 0.96868 0.93994 1.21409 0.98461 0.99576 0.95214 1.21459 0.93776 0.96443 1.00336 1.78479 1.01732 1.12081 1.14508 1.91375 1.37350 1.60717 1.31711 0.88103 0.87634 0.91692 0.90647 0.92756 0.92319 0.90122 0.77649 0.92108 0.92328 0.90672 0.83072 0.85960 0.83396 0.82086 0.82404 0.83544 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.95 71.98 0.64 -2.50 16 2 C 0.05 1.55 1.01 -10.95 -0.01 1.54 16 3 C 0.51 20.05 6.88 87.66 0.60 20.65 16 4 O -0.57 -23.66 16.11 -3.05 -0.05 -23.71 16 5 N -0.60 -25.64 3.33 -811.82 -2.70 -28.34 16 6 C 0.10 4.48 6.88 86.86 0.60 5.08 16 7 C -0.11 -5.34 5.22 31.99 0.17 -5.18 16 8 C 0.23 11.60 0.85 -10.35 -0.01 11.59 16 9 O -0.59 -31.25 13.08 -148.98 -1.95 -33.20 16 10 C -0.56 -29.68 8.21 25.60 0.21 -29.47 16 11 H 0.06 3.05 7.62 -2.91 -0.02 3.03 16 12 C 0.04 1.83 5.29 84.65 0.45 2.28 16 13 N -0.91 -47.17 10.70 21.45 0.23 -46.94 16 14 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 C 0.14 6.34 4.86 86.73 0.42 6.76 16 19 C -0.12 -2.96 5.32 30.76 0.16 -2.80 16 20 C 0.13 3.79 7.16 45.76 0.33 4.12 16 21 C -0.07 -1.63 5.87 -20.13 -0.12 -1.75 16 22 C -0.09 -1.42 9.61 22.53 0.22 -1.20 16 23 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 24 C -0.09 -1.14 10.04 22.33 0.22 -0.91 16 25 C -0.13 -2.10 10.03 22.23 0.22 -1.88 16 26 C -0.10 -2.31 9.69 22.54 0.22 -2.09 16 27 N -0.33 -11.60 12.12 -42.23 -0.51 -12.12 16 28 O -0.19 -7.15 9.05 -38.31 -0.35 -7.50 16 29 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.76 7.74 -2.39 -0.02 1.74 16 32 H 0.08 3.00 8.09 -2.39 -0.02 2.98 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.79 8.04 -2.39 -0.02 2.77 16 35 H 0.08 3.91 7.32 -2.39 -0.02 3.89 16 36 H 0.38 19.48 7.99 -74.06 -0.59 18.88 16 37 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 38 H 0.06 2.91 6.82 -2.39 -0.02 2.89 16 39 H 0.08 3.36 7.28 -2.39 -0.02 3.34 16 40 H 0.15 2.40 7.91 -2.39 -0.02 2.38 16 41 H 0.12 2.91 6.82 -2.39 -0.02 2.89 16 42 H 0.15 1.83 7.38 -2.91 -0.02 1.81 16 43 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 46 H 0.11 2.97 7.84 -2.91 -0.02 2.94 16 Total: -1.00 -68.15 378.89 1.67 -66.48 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.42 Total: 38.71 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.55 Total: 2.97 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.98 Total: -87.39 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -2.35 Total: -64.41 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -68.15 1.67 -66.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857296324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds