Wall clock time and date at job start Wed Apr 1 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39868 * 125.89517 * 2 1 4 4 C 1.35319 * 107.91905 * 179.97438 * 3 2 1 5 5 N 1.34945 * 107.74696 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.03757 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47224 * 125.00131 * 6 5 4 8 8 H 1.09002 * 109.47422 * 54.99314 * 7 6 5 9 9 C 1.53003 * 109.46891 * 295.00015 * 7 6 5 10 10 C 1.50700 * 109.47197 * 175.00144 * 7 6 5 11 11 O 1.20823 * 120.00042 * 359.97438 * 10 7 6 12 12 O 1.34231 * 119.99734 * 180.27737 * 10 7 6 13 13 C 1.45202 * 116.99658 * 179.72388 * 12 10 7 14 14 C 1.50696 * 109.46914 * 179.97438 * 13 12 10 15 15 C 1.38298 * 119.93157 * 269.72471 * 14 13 12 16 16 C 1.38104 * 120.06788 * 179.72673 * 15 14 13 17 17 C 1.38874 * 119.93359 * 0.56865 * 16 15 14 18 18 O 1.35746 * 120.07444 * 179.68207 * 17 16 15 19 19 C 1.34828 * 117.00173 * 174.48496 * 18 17 16 20 20 H 1.07997 * 120.00134 * 5.06084 * 19 18 17 21 21 C 1.38653 * 120.00034 * 185.05760 * 19 18 17 22 22 N 1.31567 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47564 * 59.99833 * 23 21 19 25 25 H 1.48507 * 109.47389 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47030 * 299.99879 * 23 21 19 27 27 C 1.38883 * 119.85818 * 359.70698 * 17 16 15 28 28 C 1.38104 * 119.93211 * 359.97438 * 27 17 16 29 29 N 1.30831 * 125.90241 * 180.29999 * 2 1 3 30 30 H 1.08997 * 109.47287 * 90.00533 * 1 2 3 31 31 H 1.09009 * 109.47076 * 210.00035 * 1 2 3 32 32 H 1.08999 * 109.47341 * 329.99838 * 1 2 3 33 33 H 1.07995 * 126.04304 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.12868 * 179.97438 * 4 3 2 35 35 H 1.08991 * 109.47240 * 4.99992 * 6 5 4 36 36 H 1.09003 * 109.46912 * 244.99620 * 6 5 4 37 37 H 1.09005 * 109.47368 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47246 * 299.99803 * 9 7 6 39 39 H 1.08994 * 109.47640 * 59.99968 * 9 7 6 40 40 H 1.08998 * 109.46710 * 299.99314 * 13 12 10 41 41 H 1.09003 * 109.47129 * 59.99328 * 13 12 10 42 42 H 1.08001 * 119.96121 * 359.97438 * 15 14 13 43 43 H 1.07999 * 120.03117 * 180.27340 * 16 15 14 44 44 H 0.96998 * 119.99673 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.03650 * 179.97438 * 27 17 16 46 46 H 1.08000 * 119.96049 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 7 3.6088 -0.6340 0.0004 6 6 4.7900 -1.5006 0.0003 7 6 4.7117 -2.4696 1.1817 8 1 3.7704 -3.0177 1.1404 9 6 4.7866 -1.6833 2.4921 10 6 5.8620 -3.4407 1.1121 11 8 6.6621 -3.3657 0.2098 12 8 5.9943 -4.3927 2.0491 13 6 7.1225 -5.2969 1.9154 14 6 7.1079 -6.2894 3.0492 15 6 7.7787 -6.0043 4.2245 16 6 7.7624 -6.9094 5.2675 17 6 7.0815 -8.1120 5.1309 18 8 7.0690 -9.0065 6.1519 19 6 6.2966 -10.1009 5.9976 20 1 5.7885 -10.2754 5.0608 21 6 6.1548 -11.0021 7.0416 22 7 6.7736 -10.7893 8.1830 23 14 5.0854 -12.5186 6.8277 24 1 5.6133 -13.3432 5.7112 25 1 5.0990 -13.3149 8.0812 26 1 3.6931 -12.1031 6.5209 27 6 6.4136 -8.3978 3.9472 28 6 6.4281 -7.4857 2.9103 29 7 2.2742 -1.0597 -0.0055 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3634 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9922 2.1598 -0.0004 34 1 4.4891 1.3486 0.0003 35 1 5.6884 -0.8902 0.0900 36 1 4.8260 -2.0656 -0.9312 37 1 4.7313 -2.3736 3.3338 38 1 5.7279 -1.1351 2.5335 39 1 3.9547 -0.9809 2.5425 40 1 7.0519 -5.8280 0.9662 41 1 8.0509 -4.7263 1.9442 42 1 8.3124 -5.0712 4.3283 43 1 8.2828 -6.6843 6.1867 44 1 6.6741 -11.4196 8.9135 45 1 5.8834 -9.3323 3.8377 46 1 5.9085 -7.7073 1.9898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869986995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:20 Heat of formation + Delta-G solvation = -34.125862 kcal Electronic energy + Delta-G solvation = -28117.326628 eV Core-core repulsion = 23973.904335 eV Total energy + Delta-G solvation = -4143.422293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23075 -41.64140 -40.80363 -38.69465 -37.55070 -36.44818 -34.38759 -33.50586 -32.10625 -31.84301 -30.89493 -29.74539 -27.89520 -27.03635 -26.59498 -24.59014 -23.71451 -22.25507 -22.04819 -21.57409 -20.39331 -19.91856 -18.97822 -18.88598 -17.95716 -17.55247 -17.39882 -16.57916 -16.36945 -16.30087 -15.86230 -15.58713 -15.42032 -15.10525 -15.02335 -14.65432 -14.46383 -14.36622 -14.20532 -13.92929 -13.79042 -13.60951 -13.52382 -13.41637 -13.21717 -13.04519 -12.86783 -12.63897 -12.48162 -12.44672 -12.38935 -12.21691 -12.16046 -11.71732 -11.53540 -11.42472 -11.23076 -10.82522 -10.17956 -9.86469 -9.46681 -9.08354 -8.50485 -6.19087 0.39170 0.53226 0.96384 1.04479 1.34620 1.35991 1.45556 1.50655 1.89040 1.93461 2.15780 2.79279 3.11073 3.28883 3.43580 3.50357 3.68207 3.84694 3.89128 3.91456 4.01565 4.04883 4.12330 4.25671 4.28719 4.40067 4.45372 4.50818 4.52377 4.67701 4.71848 4.78636 4.85378 4.86060 4.96659 4.96807 5.08804 5.09869 5.10357 5.19922 5.27590 5.34439 5.49034 5.63781 5.66109 5.80529 5.98210 6.09740 6.13005 6.60197 6.81944 6.93766 7.71308 8.71810 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.001771 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.182734 B =15804.305078 C =16778.353851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.056 3.944 3 C -0.285 4.285 4 C 0.061 3.939 5 N -0.378 5.378 6 C 0.155 3.845 7 C -0.089 4.089 8 H 0.113 0.887 9 C -0.136 4.136 10 C 0.476 3.524 11 O -0.529 6.529 12 O -0.355 6.355 13 C 0.130 3.870 14 C -0.183 4.183 15 C -0.040 4.040 16 C -0.206 4.206 17 C 0.125 3.875 18 O -0.226 6.226 19 C -0.417 4.417 20 H 0.103 0.897 21 C -0.021 4.021 22 N -0.917 5.917 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.258 1.258 27 C -0.247 4.247 28 C -0.045 4.045 29 N -0.339 5.339 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.167 0.833 34 H 0.208 0.792 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.120 0.880 44 H 0.274 0.726 45 H 0.123 0.877 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 24.188 -17.596 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.314 4.314 4 C -0.084 4.084 5 N -0.160 5.160 6 C 0.033 3.967 7 C -0.109 4.109 8 H 0.130 0.870 9 C -0.193 4.193 10 C 0.320 3.680 11 O -0.419 6.419 12 O -0.271 6.271 13 C 0.057 3.943 14 C -0.184 4.184 15 C -0.058 4.058 16 C -0.225 4.225 17 C 0.074 3.926 18 O -0.131 6.131 19 C -0.492 4.492 20 H 0.121 0.879 21 C -0.219 4.219 22 N -0.554 5.554 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.182 1.182 27 C -0.266 4.266 28 C -0.063 4.063 29 N -0.162 5.162 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.184 0.816 34 H 0.225 0.775 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.170 0.830 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.545 22.716 -17.430 29.371 hybrid contribution -0.137 -0.340 0.275 0.458 sum -6.682 22.376 -17.154 28.976 Atomic orbital electron populations 1.20269 0.85279 1.03922 1.03597 1.22941 0.98243 0.91088 0.98682 1.21742 0.91714 1.00445 1.17463 1.23196 1.00996 0.84292 0.99908 1.48584 1.04733 1.05357 1.57279 1.21529 0.84670 0.92615 0.97868 1.21211 0.96108 0.94673 0.98920 0.86952 1.21697 1.03457 1.00090 0.94050 1.23608 0.85707 0.80025 0.78687 1.90661 1.44217 1.72156 1.34898 1.86626 1.49441 1.40964 1.50116 1.21720 0.87236 0.88569 0.96739 1.19255 1.06169 0.96094 0.96856 1.20914 0.96289 0.97963 0.90614 1.20464 1.06974 0.93490 1.01574 1.20006 0.94019 0.90137 0.88418 1.83946 1.60819 1.30017 1.38362 1.21804 1.27074 0.98566 1.01802 0.87938 1.26601 0.98992 1.02519 0.93755 1.70174 1.42673 1.38252 1.04312 0.84652 0.77793 0.75270 0.78557 1.18093 1.19571 1.18222 1.21252 1.07850 1.02816 0.94656 1.20970 0.95233 0.92417 0.97644 1.77275 0.87534 1.24355 1.27055 0.89803 0.91580 0.88589 0.81555 0.77547 0.85321 0.89463 0.91281 0.90449 0.91300 0.89895 0.89168 0.83025 0.86184 0.91706 0.85890 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 71.24 0.74 -0.09 16 2 C 0.06 0.99 7.22 43.10 0.31 1.30 16 3 C -0.28 -3.86 10.74 21.99 0.24 -3.63 16 4 C 0.06 0.75 11.45 83.54 0.96 1.71 16 5 N -0.38 -6.34 3.13 -348.07 -1.09 -7.43 16 6 C 0.15 2.30 5.25 86.38 0.45 2.75 16 7 C -0.09 -1.57 2.91 -11.54 -0.03 -1.60 16 8 H 0.11 2.26 8.06 -2.39 -0.02 2.24 16 9 C -0.14 -2.10 9.01 71.98 0.65 -1.45 16 10 C 0.48 10.49 7.25 71.24 0.52 11.01 16 11 O -0.53 -13.19 15.67 21.97 0.34 -12.84 16 12 O -0.36 -9.00 10.11 -51.43 -0.52 -9.52 16 13 C 0.13 3.23 5.59 71.23 0.40 3.63 16 14 C -0.18 -5.70 5.52 -19.84 -0.11 -5.81 16 15 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 16 C -0.21 -8.51 9.99 22.39 0.22 -8.29 16 17 C 0.13 6.14 6.65 22.58 0.15 6.29 16 18 O -0.23 -13.38 9.76 -22.68 -0.22 -13.60 16 19 C -0.42 -23.94 9.49 67.92 0.64 -23.30 16 20 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 21 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 22 N -0.92 -55.57 13.67 21.61 0.30 -55.27 16 23 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.25 -10.58 9.17 22.39 0.21 -10.37 16 28 C -0.04 -1.53 9.69 22.25 0.22 -1.32 16 29 N -0.34 -7.35 12.35 -47.39 -0.59 -7.93 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.13 1.29 8.07 -2.39 -0.02 1.27 16 36 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 37 H 0.07 1.22 8.12 -2.38 -0.02 1.21 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 1.10 7.75 -2.39 -0.02 1.08 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 42 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 45 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 46 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -75.34 399.24 7.48 -67.86 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.99 Total: 25.35 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 6.24 Total: -30.92 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.38 Total: -70.64 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.40 Total: -35.97 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -75.34 7.48 -67.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869986995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.732 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds