Wall clock time and date at job start Wed Apr 1 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00188 * 2 1 4 4 C 1.50703 * 109.47062 * 270.00493 * 3 2 1 5 5 H 1.08000 * 120.00091 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99919 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99839 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99995 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47035 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46630 * 120.00097 * 8 6 4 11 11 H 1.48499 * 109.47315 * 240.00244 * 8 6 4 12 12 C 1.34774 * 119.99983 * 180.02562 * 2 1 3 13 13 O 1.21368 * 119.99776 * 174.42484 * 12 2 1 14 14 C 1.49333 * 120.00149 * 354.42084 * 12 2 1 15 15 O 1.21396 * 119.99675 * 0.73758 * 14 12 2 16 16 N 1.34775 * 120.00338 * 180.73830 * 14 12 2 17 17 C 1.39897 * 119.99956 * 185.86927 * 16 14 12 18 18 C 1.38983 * 120.16966 * 23.65319 * 17 16 14 19 19 C 1.38288 * 120.45466 * 180.02562 * 18 17 16 20 20 C 1.38206 * 120.38506 * 359.97347 * 19 18 17 21 21 C 1.39104 * 119.68676 * 0.03353 * 20 19 18 22 22 C 1.38881 * 120.15864 * 203.67344 * 17 16 14 23 23 O 1.35706 * 121.44524 * 359.95877 * 22 17 16 24 24 C 1.42825 * 117.13969 * 146.37230 * 23 22 17 25 25 C 1.52998 * 109.25366 * 287.74781 * 24 23 22 26 26 C 1.53001 * 109.25622 * 168.27509 * 24 23 22 27 27 C 1.50592 * 110.54239 * 48.01034 * 24 23 22 28 28 C 1.33119 * 120.03123 * 328.81230 * 27 24 23 29 29 H 1.08997 * 109.46932 * 263.81807 * 1 2 3 30 30 H 1.09000 * 109.47007 * 23.81493 * 1 2 3 31 31 H 1.08993 * 109.47135 * 143.81682 * 1 2 3 32 32 H 1.09003 * 109.46951 * 29.99736 * 3 2 1 33 33 H 1.08994 * 109.47276 * 150.00287 * 3 2 1 34 34 H 0.97001 * 120.00147 * 180.02562 * 7 6 4 35 35 H 0.97002 * 119.99870 * 5.86187 * 16 14 12 36 36 H 1.08003 * 119.77467 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.81018 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.15783 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47241 * 300.52077 * 25 24 23 40 40 H 1.09001 * 109.47179 * 60.52736 * 25 24 23 41 41 H 1.09001 * 109.46958 * 180.52702 * 25 24 23 42 42 H 1.09001 * 109.47067 * 179.47562 * 26 24 23 43 43 H 1.09005 * 109.47220 * 299.47641 * 26 24 23 44 44 H 1.09004 * 109.47144 * 59.47537 * 26 24 23 45 45 H 1.07998 * 119.97668 * 148.78716 * 27 24 23 46 46 H 1.08002 * 120.95643 * 180.58835 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4379 3.4170 -3.4339 9 1 2.8607 2.4166 -4.3673 10 1 2.7997 4.7374 -3.6678 11 1 4.9004 3.5258 -3.6667 12 6 2.1389 -1.1672 -0.0005 13 8 3.3483 -1.1696 -0.1026 14 6 1.3976 -2.4574 0.1246 15 8 0.1868 -2.4557 0.2134 16 7 2.0726 -3.6239 0.1391 17 6 1.3744 -4.8362 0.1324 18 6 0.0797 -4.8938 -0.3696 19 6 -0.6160 -6.0889 -0.3786 20 6 -0.0318 -7.2416 0.1113 21 6 1.2635 -7.1964 0.6165 22 6 1.9716 -5.9880 0.6278 23 8 3.2339 -5.9729 1.1260 24 6 3.5169 -6.8582 2.2105 25 6 2.8366 -6.3370 3.4779 26 6 5.0293 -6.9129 2.4357 27 6 3.0094 -8.2434 1.9081 28 6 1.9272 -8.4057 1.1501 29 1 -0.3633 -0.1107 1.0217 30 1 -0.3633 0.9402 -0.4150 31 1 -0.3633 -0.8294 -0.6067 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 4.0296 4.4444 -0.8503 35 1 3.0425 -3.6228 0.1540 36 1 -0.3866 -3.9990 -0.7546 37 1 -1.6214 -6.1219 -0.7716 38 1 -0.5783 -8.1730 0.1022 39 1 3.2085 -5.3379 3.7053 40 1 1.7587 -6.2966 3.3213 41 1 3.0581 -7.0051 4.3101 42 1 5.2486 -7.5805 3.2689 43 1 5.5176 -7.2838 1.5345 44 1 5.3990 -5.9132 2.6640 45 1 3.5239 -9.1054 2.3062 46 1 1.5448 -9.3918 0.9316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873789430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:19 Heat of formation + Delta-G solvation = -44.049359 kcal Electronic energy + Delta-G solvation = -30114.674366 eV Core-core repulsion = 25970.821757 eV Total energy + Delta-G solvation = -4143.852609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41533 -40.37149 -38.48784 -37.48740 -35.78089 -34.91077 -33.98015 -32.79149 -32.57622 -29.64183 -28.85280 -28.03977 -27.62584 -26.21636 -24.63475 -23.83352 -22.83033 -22.68069 -21.31230 -19.81802 -18.87077 -18.19865 -17.29622 -16.76872 -16.60294 -16.32987 -15.81433 -15.52572 -15.40402 -15.04781 -14.89065 -14.60867 -14.34593 -14.22624 -13.69494 -13.60415 -13.23031 -13.03329 -12.98397 -12.67560 -12.53650 -12.37876 -12.18361 -12.13636 -12.09077 -11.87126 -11.72998 -11.32364 -11.29897 -10.97767 -10.83031 -10.77411 -10.60703 -10.49606 -10.20932 -10.05963 -9.66692 -8.79362 -8.48789 -8.22998 -7.98274 -7.78572 -6.09775 -4.14814 0.62822 1.02406 1.87318 2.15805 2.66296 3.01951 3.28571 3.36021 3.40824 3.57942 3.80888 4.00652 4.22661 4.36994 4.41385 4.52815 4.62788 4.68638 4.73918 4.98177 5.05954 5.16975 5.24874 5.25242 5.28867 5.36225 5.45881 5.47342 5.65457 5.75964 5.81948 5.86567 5.94037 5.96159 6.09679 6.11172 6.15509 6.33188 6.42699 6.51743 6.68439 6.80551 7.16729 7.25887 7.27325 7.36835 7.82388 7.90617 8.13006 8.19284 8.62352 8.90091 9.50199 10.98548 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002648 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.299324 B =10573.029205 C =11367.803744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.562 5.562 3 C 0.242 3.758 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.519 6.519 14 C 0.508 3.492 15 O -0.504 6.504 16 N -0.640 5.640 17 C 0.135 3.865 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.117 4.117 22 C 0.103 3.897 23 O -0.305 6.305 24 C 0.149 3.851 25 C -0.173 4.173 26 C -0.138 4.138 27 C -0.186 4.186 28 C -0.092 4.092 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.427 0.573 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.131 0.869 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 -25.208 6.594 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.294 5.294 3 C 0.124 3.876 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.274 3.726 13 O -0.397 6.397 14 C 0.293 3.707 15 O -0.379 6.379 16 N -0.286 5.286 17 C 0.040 3.960 18 C -0.121 4.121 19 C -0.144 4.144 20 C -0.113 4.113 21 C -0.118 4.118 22 C 0.056 3.944 23 O -0.220 6.220 24 C 0.112 3.888 25 C -0.230 4.230 26 C -0.195 4.195 27 C -0.204 4.204 28 C -0.109 4.109 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.174 0.826 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.065 -24.774 6.591 26.132 hybrid contribution 0.499 0.131 -0.858 1.001 sum -4.566 -24.643 5.733 25.710 Atomic orbital electron populations 1.22046 0.79488 1.03305 1.01610 1.48119 1.07599 1.06701 1.66967 1.19525 0.92616 0.77333 0.98135 1.21419 1.36813 1.06476 0.91957 0.92164 1.24935 0.95187 0.96258 0.97660 1.69937 1.38249 1.14319 1.30758 0.86395 0.78097 0.78356 0.84318 1.19720 1.20890 1.20802 1.19498 0.87570 0.84337 0.81184 1.90759 1.13328 1.86433 1.49141 1.20977 0.87756 0.85615 0.76401 1.90627 1.13837 1.87054 1.46387 1.43140 1.11887 1.02967 1.70578 1.17225 0.92913 0.83127 1.02740 1.21506 0.92660 0.99992 0.97942 1.20984 1.00407 0.91819 1.01166 1.20965 0.93464 0.98691 0.98215 1.18893 0.95740 0.92212 1.04985 1.18489 0.85636 0.91932 0.98359 1.86000 1.25493 1.61307 1.49192 1.20649 0.96568 0.86333 0.85292 1.22410 1.01392 1.02331 0.96855 1.21819 0.91306 1.03658 1.02681 1.23878 0.97552 0.97983 1.00957 1.21749 0.95299 0.96668 0.97228 0.93159 0.91058 0.89983 0.94095 0.93542 0.92640 0.73450 0.82632 0.85170 0.85446 0.91068 0.92037 0.90841 0.90269 0.91331 0.90891 0.85152 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 9.27 59.85 0.56 1.97 16 2 N -0.56 -12.38 2.86 -183.51 -0.52 -12.91 16 3 C 0.24 6.30 5.09 -5.19 -0.03 6.27 16 4 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.49 10.58 7.72 -11.64 -0.09 10.49 16 13 O -0.52 -12.55 16.12 5.48 0.09 -12.46 16 14 C 0.51 9.05 7.58 -11.64 -0.09 8.96 16 15 O -0.50 -8.80 10.37 5.46 0.06 -8.74 16 16 N -0.64 -10.12 5.29 -10.26 -0.05 -10.17 16 17 C 0.14 1.96 6.45 -83.66 -0.54 1.42 16 18 C -0.10 -1.35 8.73 -39.29 -0.34 -1.69 16 19 C -0.13 -1.33 10.03 -39.57 -0.40 -1.73 16 20 C -0.09 -0.93 9.85 -39.27 -0.39 -1.32 16 21 C -0.12 -1.31 5.77 -104.93 -0.61 -1.92 16 22 C 0.10 1.37 5.83 -38.66 -0.23 1.14 16 23 O -0.30 -3.93 9.26 -18.82 -0.17 -4.10 16 24 C 0.15 1.46 1.08 -91.82 -0.10 1.36 16 25 C -0.17 -1.61 8.52 37.16 0.32 -1.30 16 26 C -0.14 -1.07 8.79 37.16 0.33 -0.74 16 27 C -0.19 -1.55 8.74 -36.14 -0.32 -1.87 16 28 C -0.09 -0.81 10.08 -37.41 -0.38 -1.19 16 29 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 31 H 0.08 1.41 5.83 -51.93 -0.30 1.10 16 32 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.43 6.65 7.87 -40.82 -0.32 6.33 16 36 H 0.16 2.22 5.71 -52.48 -0.30 1.92 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.66 7.75 -51.93 -0.40 0.25 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -32.46 384.38 -8.14 -40.60 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.32 Total: 4.44 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.72 Total: 6.29 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.16 Total: -48.57 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.03 Total: -25.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.46 -8.14 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873789430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.445 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds