Wall clock time and date at job start Wed Apr 1 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48496 * 109.46854 * 269.99205 * 3 2 1 5 5 H 1.48498 * 109.47204 * 29.99766 * 3 2 1 6 6 H 1.48503 * 109.47067 * 149.99746 * 3 2 1 7 7 C 1.38652 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99800 * 0.02562 * 7 2 1 9 9 O 1.34827 * 120.00409 * 180.28012 * 7 2 1 10 10 C 1.35750 * 117.00608 * 174.69000 * 9 7 2 11 11 C 1.38944 * 120.03527 * 185.05977 * 10 9 7 12 12 C 1.38133 * 120.06544 * 179.72169 * 11 10 9 13 13 C 1.38191 * 120.14065 * 0.55463 * 12 11 10 14 14 C 1.38922 * 120.06828 * 359.72308 * 13 12 11 15 15 N 1.39939 * 120.03947 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99721 * 35.14713 * 15 14 13 17 17 O 1.21585 * 119.99978 * 355.49707 * 16 15 14 18 18 N 1.34780 * 119.99763 * 175.48929 * 16 15 14 19 19 C 1.46502 * 119.99509 * 180.02562 * 18 16 15 20 20 H 1.09000 * 110.43155 * 327.52493 * 19 18 16 21 21 C 1.55441 * 110.47893 * 90.18950 * 19 18 16 22 22 H 1.08994 * 113.20696 * 348.07471 * 21 19 18 23 23 O 1.43997 * 105.46488 * 223.07278 * 21 19 18 24 24 C 1.42991 * 110.28554 * 264.11163 * 23 21 19 25 25 C 1.54484 * 106.46564 * 12.20619 * 24 23 21 26 26 H 1.09002 * 113.90934 * 204.12860 * 25 24 23 27 27 C 1.54814 * 108.19352 * 75.51793 * 25 24 23 28 28 C 1.55814 * 110.47542 * 204.99870 * 19 18 16 29 29 H 1.09002 * 116.00077 * 46.05693 * 28 19 18 30 30 C 1.56705 * 100.35698 * 279.90027 * 28 19 18 31 31 C 1.56140 * 104.36096 * 111.59320 * 21 19 18 32 32 H 1.08999 * 117.16113 * 203.78173 * 31 21 19 33 33 C 1.38735 * 120.02987 * 5.33710 * 10 9 7 34 34 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 35 35 H 1.07994 * 119.96816 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.92866 * 180.28156 * 12 11 10 37 37 H 1.08003 * 119.97251 * 179.70060 * 13 12 11 38 38 H 0.96995 * 120.00420 * 215.15205 * 15 14 13 39 39 H 0.96994 * 120.00367 * 0.02562 * 18 16 15 40 40 H 1.09006 * 110.05526 * 131.45502 * 24 23 21 41 41 H 1.08998 * 110.05854 * 252.89847 * 24 23 21 42 42 H 1.09003 * 110.31548 * 135.29380 * 27 25 24 43 43 H 1.08998 * 110.31617 * 13.11265 * 27 25 24 44 44 H 1.09006 * 111.96597 * 62.64722 * 30 28 19 45 45 H 1.08992 * 111.97206 * 188.93986 * 30 28 19 46 46 H 1.08003 * 120.06971 * 359.97438 * 33 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0062 10 6 3.9730 -2.4054 0.1184 11 6 5.3558 -2.4711 0.2367 12 6 5.9827 -3.6961 0.3566 13 6 5.2383 -4.8603 0.3478 14 6 3.8558 -4.8016 0.2240 15 7 3.1026 -5.9809 0.2146 16 6 3.4815 -7.0285 0.9732 17 8 4.5209 -6.9793 1.6022 18 7 2.7080 -8.1306 1.0348 19 6 3.1196 -9.2690 1.8600 20 1 4.2064 -9.3505 1.8811 21 6 2.5538 -9.1290 3.3010 22 1 2.1407 -8.1415 3.5061 23 8 3.6361 -9.4986 4.1760 24 6 3.5230 -10.8738 4.5508 25 6 2.4585 -11.4954 3.6197 26 1 1.9732 -12.3801 4.0320 27 6 3.0982 -11.7038 2.2254 28 6 2.4843 -10.5875 1.3254 29 1 2.5417 -10.7431 0.2481 30 6 1.0449 -10.4738 1.9344 31 6 1.4978 -10.2734 3.4153 32 1 0.7045 -10.1467 4.1520 33 6 3.2228 -3.5723 0.1091 34 1 -0.4850 0.8401 -0.0004 35 1 5.9408 -1.5633 0.2391 36 1 7.0573 -3.7444 0.4531 37 1 5.7317 -5.8169 0.4369 38 1 2.3080 -6.0445 -0.3379 39 1 1.8790 -8.1700 0.5329 40 1 4.4796 -11.3784 4.4143 41 1 3.2039 -10.9530 5.5901 42 1 2.8419 -12.6885 1.8348 43 1 4.1806 -11.5894 2.2848 44 1 0.5075 -9.6063 1.5514 45 1 0.4727 -11.3920 1.8026 46 1 2.1481 -3.5240 0.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875996688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:05 Heat of formation + Delta-G solvation = -72.106713 kcal Electronic energy + Delta-G solvation = -29870.842542 eV Core-core repulsion = 25725.773276 eV Total energy + Delta-G solvation = -4145.069267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.76070 -41.56065 -40.48985 -38.35361 -37.05095 -35.67181 -35.26893 -34.38430 -31.83078 -30.98119 -30.28705 -29.78187 -27.90884 -27.18850 -26.16510 -23.80306 -23.39549 -21.96398 -21.55028 -21.31111 -20.48481 -20.10714 -19.40759 -19.23186 -18.23858 -17.32258 -17.08424 -16.87357 -16.43514 -16.33121 -15.95982 -15.82635 -15.65656 -15.46964 -15.30730 -15.05555 -14.73642 -14.65067 -14.21447 -14.10985 -14.01481 -13.38417 -13.20015 -12.85987 -12.68383 -12.52065 -12.49219 -12.36224 -12.07617 -12.04376 -11.85577 -11.79971 -11.57990 -11.51541 -11.42502 -11.31590 -11.10103 -10.89412 -10.82222 -9.97676 -9.37652 -8.90903 -8.49225 -6.21762 0.42262 0.66352 1.33248 1.37338 1.47341 1.53732 2.01568 2.29508 2.76327 2.78935 3.01443 3.06207 3.19538 3.28249 3.35665 3.59929 3.84277 3.92403 4.03326 4.10880 4.21502 4.23513 4.31679 4.32476 4.42809 4.50933 4.55809 4.61878 4.66695 4.72418 4.78090 4.89275 4.92756 4.93365 5.06363 5.07508 5.11979 5.20805 5.32028 5.33975 5.37260 5.44927 5.49785 5.66384 5.75330 5.87634 5.96281 6.10904 6.23330 6.85449 6.91643 7.42908 7.58853 8.62048 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002331 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.779282 B =12008.195239 C =12703.342116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.240 6.240 10 C 0.141 3.859 11 C -0.202 4.202 12 C -0.054 4.054 13 C -0.193 4.193 14 C 0.199 3.801 15 N -0.675 5.675 16 C 0.700 3.300 17 O -0.606 6.606 18 N -0.716 5.716 19 C 0.142 3.858 20 H 0.072 0.928 21 C 0.061 3.939 22 H 0.081 0.919 23 O -0.408 6.408 24 C 0.041 3.959 25 C -0.115 4.115 26 H 0.134 0.866 27 C -0.113 4.113 28 C -0.099 4.099 29 H 0.127 0.873 30 C -0.111 4.111 31 C -0.126 4.126 32 H 0.118 0.882 33 C -0.254 4.254 34 H 0.284 0.716 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.419 0.581 39 H 0.413 0.587 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -27.715 2.761 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.147 6.147 10 C 0.091 3.909 11 C -0.222 4.222 12 C -0.072 4.072 13 C -0.214 4.214 14 C 0.104 3.896 15 N -0.323 5.323 16 C 0.400 3.600 17 O -0.485 6.485 18 N -0.373 5.373 19 C 0.036 3.964 20 H 0.090 0.910 21 C 0.002 3.998 22 H 0.099 0.901 23 O -0.328 6.328 24 C -0.035 4.035 25 C -0.133 4.133 26 H 0.152 0.848 27 C -0.151 4.151 28 C -0.118 4.118 29 H 0.145 0.855 30 C -0.148 4.148 31 C -0.144 4.144 32 H 0.136 0.864 33 C -0.276 4.276 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.256 0.744 39 H 0.250 0.750 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.171 -27.281 3.410 27.675 hybrid contribution -0.966 0.943 -0.280 1.379 sum 2.205 -26.337 3.130 26.614 Atomic orbital electron populations 1.69718 1.06811 1.29555 1.50189 1.25236 0.95856 1.02033 0.95514 0.85257 0.78841 0.77572 0.79351 1.18894 1.19434 1.18763 1.20705 0.78034 0.96147 1.52558 0.89877 1.83548 1.21339 1.26916 1.82896 1.19303 0.92826 0.84624 0.94148 1.20533 0.90711 0.99681 1.11262 1.20982 1.00656 0.90010 0.95597 1.21062 0.91904 0.99602 1.08823 1.17229 0.90653 0.83920 0.97794 1.42434 1.30892 1.11691 1.47268 1.16100 0.83691 0.80630 0.79528 1.90924 1.26006 1.81801 1.49767 1.44925 1.25856 1.14605 1.51873 1.22926 0.99430 0.84837 0.89221 0.90979 1.24593 0.87155 0.98789 0.89234 0.90095 1.88466 1.48413 1.28241 1.67645 1.23476 0.99987 0.81277 0.98731 1.23771 0.94851 0.98862 0.95826 0.84848 1.22707 0.99615 0.99418 0.93322 1.23867 0.95709 0.91722 1.00509 0.85490 1.23358 0.95680 1.03552 0.92209 1.24554 0.96988 0.93037 0.99868 0.86379 1.20866 1.00348 0.91128 1.15295 0.90603 0.84771 0.82483 0.85079 0.74400 0.74975 0.90153 0.91547 0.88096 0.92031 0.90433 0.87691 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.96 21.61 0.30 -54.20 16 2 C 0.01 0.70 5.49 84.83 0.47 1.16 16 3 Si 0.97 45.35 28.62 68.60 1.96 47.32 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.40 -23.24 9.94 67.92 0.68 -22.57 16 8 H 0.08 5.02 5.43 -2.91 -0.02 5.01 16 9 O -0.24 -13.03 8.58 -22.71 -0.19 -13.22 16 10 C 0.14 6.73 6.65 22.56 0.15 6.88 16 11 C -0.20 -8.12 9.99 22.41 0.22 -7.90 16 12 C -0.05 -1.89 10.03 22.23 0.22 -1.67 16 13 C -0.19 -7.27 8.69 22.42 0.19 -7.08 16 14 C 0.20 7.72 6.29 38.13 0.24 7.96 16 15 N -0.67 -20.76 5.34 -317.23 -1.69 -22.45 16 16 C 0.70 21.72 8.41 179.05 1.51 23.22 16 17 O -0.61 -24.13 13.43 -3.98 -0.05 -24.18 16 18 N -0.72 -15.09 5.07 -449.18 -2.28 -17.37 16 19 C 0.14 2.88 2.30 46.80 0.11 2.99 16 20 H 0.07 1.99 7.09 -2.39 -0.02 1.97 16 21 C 0.06 1.34 4.63 32.52 0.15 1.50 16 22 H 0.08 2.16 8.10 -2.39 -0.02 2.14 16 23 O -0.41 -10.84 10.66 -148.98 -1.59 -12.43 16 24 C 0.04 0.68 6.95 72.49 0.50 1.19 16 25 C -0.11 -1.16 4.38 -8.35 -0.04 -1.20 16 26 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 27 C -0.11 -1.09 5.77 32.25 0.19 -0.90 16 28 C -0.10 -1.08 4.79 -7.49 -0.04 -1.11 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 C -0.11 -0.93 6.38 32.98 0.21 -0.72 16 31 C -0.13 -1.59 5.01 -7.29 -0.04 -1.63 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 C -0.25 -11.37 9.08 22.51 0.20 -11.17 16 34 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 36 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.13 4.94 6.22 -2.91 -0.02 4.92 16 38 H 0.42 10.03 8.84 -92.71 -0.82 9.21 16 39 H 0.41 5.77 8.04 -92.71 -0.75 5.02 16 40 H 0.08 1.22 7.75 -2.38 -0.02 1.20 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 43 H 0.06 0.80 7.19 -2.39 -0.02 0.78 16 44 H 0.08 0.65 7.54 -2.38 -0.02 0.63 16 45 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.12 5.69 5.63 -2.91 -0.02 5.67 16 Total: -1.00 -77.35 366.90 0.87 -76.48 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.52 Total: 31.10 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.93 Total: -11.04 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -3.67 Total: -94.02 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.84 Total: -49.84 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.32 kcal Total: -77.35 0.87 -76.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875996688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.375 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds