Wall clock time and date at job start Wed Apr 1 2020 02:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 112.11336 * 2 1 4 4 C 1.57283 * 113.17780 * 232.45126 * 2 1 3 5 5 C 1.53002 * 117.66659 * 59.34625 * 4 2 1 6 6 C 1.56214 * 100.40358 * 186.87831 * 4 2 1 7 7 C 1.54802 * 103.62040 * 36.58571 * 6 4 2 8 8 C 1.56086 * 103.92158 * 359.30037 * 7 6 4 9 9 C 1.50699 * 116.04149 * 198.08153 * 8 7 6 10 10 O 1.21276 * 120.00318 * 93.98396 * 9 8 7 11 11 N 1.34780 * 119.99936 * 274.25886 * 9 8 7 12 12 C 1.39270 * 119.99997 * 174.57999 * 11 9 8 13 13 C 1.39672 * 119.57440 * 185.32459 * 12 11 9 14 14 C 1.38654 * 119.49574 * 179.97438 * 13 12 11 15 15 C 1.38345 * 118.66764 * 0.02562 * 14 13 12 16 16 C 1.40582 * 119.13096 * 359.97438 * 15 14 13 17 17 C 1.41341 * 119.78622 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00003 * 0.02562 * 17 16 15 19 19 C 1.40026 * 119.99966 * 179.97438 * 17 16 15 20 20 N 1.30743 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46838 * 90.00531 * 21 19 17 23 23 H 1.48497 * 109.47140 * 210.00220 * 21 19 17 24 24 H 1.48500 * 109.46982 * 330.00605 * 21 19 17 25 25 N 1.31907 * 119.57269 * 5.05733 * 12 11 9 26 26 O 1.47747 * 104.29216 * 69.11542 * 8 7 6 27 27 C 1.36906 * 107.91316 * 289.61458 * 26 8 7 28 28 O 1.20823 * 126.00872 * 179.42986 * 27 26 8 29 29 H 1.08998 * 109.46869 * 293.52548 * 1 2 3 30 30 H 1.09001 * 109.46800 * 53.52431 * 1 2 3 31 31 H 1.08997 * 109.47086 * 173.52054 * 1 2 3 32 32 H 1.08999 * 109.46955 * 186.47278 * 3 2 1 33 33 H 1.09000 * 109.47296 * 306.47568 * 3 2 1 34 34 H 1.09000 * 109.47250 * 66.47810 * 3 2 1 35 35 H 1.09005 * 109.47199 * 180.34000 * 5 4 2 36 36 H 1.08999 * 109.47016 * 300.33522 * 5 4 2 37 37 H 1.08999 * 109.46959 * 60.33828 * 5 4 2 38 38 H 1.09008 * 110.59092 * 278.05705 * 6 4 2 39 39 H 1.08993 * 110.72858 * 155.18545 * 6 4 2 40 40 H 1.09000 * 110.53912 * 240.68788 * 7 6 4 41 41 H 1.09001 * 110.65540 * 117.96789 * 7 6 4 42 42 H 0.97000 * 119.99681 * 354.57452 * 11 9 8 43 43 H 1.08005 * 120.25230 * 359.96249 * 13 12 11 44 44 H 1.08003 * 120.66378 * 180.02562 * 14 13 12 45 45 H 1.08000 * 120.43593 * 179.97438 * 15 14 13 46 46 H 0.96996 * 120.00436 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1060 1.4174 0.0000 4 6 2.1491 -0.8812 -1.1464 5 6 1.7936 -0.5207 -2.5902 6 6 3.6624 -0.8192 -0.7638 7 6 3.6483 -0.8394 0.7840 8 6 2.1307 -0.8925 1.1450 9 6 1.7721 -0.5014 2.5556 10 8 1.4502 0.6409 2.8050 11 7 1.8144 -1.4200 3.5410 12 6 1.5935 -1.0356 4.8612 13 6 1.7492 -1.9709 5.8868 14 6 1.5293 -1.5864 7.2006 15 6 1.1593 -0.2780 7.4561 16 6 1.0191 0.6161 6.3804 17 6 0.6411 1.9557 6.6255 18 1 0.4613 2.2897 7.6368 19 6 0.5006 2.8502 5.5574 20 7 0.7186 2.4461 4.3333 21 14 0.0017 4.6210 5.8815 22 1 1.2177 5.4476 6.0893 23 1 -0.7581 5.1422 4.7169 24 1 -0.8510 4.6807 7.0958 25 7 1.2451 0.2085 5.1274 26 8 1.7005 -2.2392 0.7158 27 6 1.7047 -2.2663 -0.6530 28 8 1.4162 -3.2133 -1.3456 29 1 -0.3633 0.4102 0.9422 30 1 -0.3633 0.6109 -0.8264 31 1 -0.3633 -1.0211 -0.1160 32 1 3.1887 1.3696 -0.1158 33 1 1.6768 1.9840 -0.8263 34 1 1.8628 1.9084 0.9423 35 1 2.2862 -1.2158 -3.2701 36 1 0.7138 -0.5842 -2.7252 37 1 2.1274 0.4947 -2.8038 38 1 4.1132 0.1028 -1.1311 39 1 4.1947 -1.6867 -1.1537 40 1 4.1047 0.0666 1.1825 41 1 4.1623 -1.7233 1.1617 42 1 1.9987 -2.3488 3.3305 43 1 2.0384 -2.9861 5.6581 44 1 1.6447 -2.2940 8.0083 45 1 0.9804 0.0521 8.4688 46 1 0.6217 3.0657 3.5934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:59 Heat of formation + Delta-G solvation = -40.027689 kcal Electronic energy + Delta-G solvation = -31986.094797 eV Core-core repulsion = 27842.416581 eV Total energy + Delta-G solvation = -4143.678216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34822 -39.26882 -38.04838 -37.23854 -35.81170 -34.23611 -33.10345 -32.05235 -31.27320 -30.37889 -29.27267 -27.33577 -26.79526 -25.52767 -25.14587 -22.85173 -22.23295 -21.39910 -20.35741 -19.49046 -18.78398 -17.79652 -16.85476 -16.77166 -16.27914 -16.20062 -15.69496 -14.88141 -14.62377 -14.48671 -14.38227 -14.20977 -13.74818 -13.66538 -13.32642 -13.16165 -12.99386 -12.78678 -12.62966 -12.43760 -12.30360 -12.11789 -12.03868 -11.86692 -11.80197 -11.41747 -11.27229 -11.21403 -11.14528 -11.01109 -10.73942 -10.69812 -10.54216 -10.17315 -10.01384 -9.85071 -9.78641 -9.16448 -9.09809 -8.04178 -7.34820 -7.06810 -6.23445 -4.46472 2.05907 2.48287 2.84541 3.01240 3.12404 3.14876 3.20805 3.38424 3.46831 3.59965 3.85367 4.00394 4.11353 4.44286 4.70050 4.76703 4.85942 4.87041 5.01391 5.12878 5.17660 5.29205 5.48283 5.52654 5.56272 5.67470 5.70671 5.72582 5.81580 5.87544 5.93452 5.96073 5.98279 6.06352 6.30944 6.40436 6.41587 6.47196 6.59312 6.75924 6.78612 7.15754 7.40647 7.46750 7.52573 7.75139 7.94460 8.10148 8.35909 8.62726 8.94646 9.02801 10.13751 10.39770 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.004195 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.756614 B = 6672.626641 C = 8141.453865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.082 3.918 9 C 0.516 3.484 10 O -0.379 6.379 11 N -0.654 5.654 12 C 0.369 3.631 13 C -0.351 4.351 14 C -0.036 4.036 15 C -0.302 4.302 16 C 0.272 3.728 17 C -0.424 4.424 18 H 0.083 0.917 19 C 0.061 3.939 20 N -0.661 5.661 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.473 5.473 26 O -0.339 6.339 27 C 0.485 3.515 28 O -0.454 6.454 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.405 0.595 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -1.888 -12.464 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.124 4.124 5 C -0.167 4.167 6 C -0.150 4.150 7 C -0.177 4.177 8 C 0.041 3.959 9 C 0.295 3.705 10 O -0.241 6.241 11 N -0.300 5.300 12 C 0.131 3.869 13 C -0.377 4.377 14 C -0.060 4.060 15 C -0.325 4.325 16 C 0.147 3.853 17 C -0.455 4.455 18 H 0.101 0.899 19 C -0.168 4.168 20 N -0.280 5.280 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.193 5.193 26 O -0.257 6.257 27 C 0.325 3.675 28 O -0.337 6.337 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.239 0.761 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.324 -0.925 -13.403 14.114 hybrid contribution 0.076 -0.646 0.727 0.975 sum 4.400 -1.570 -12.676 13.510 Atomic orbital electron populations 1.21707 0.92134 1.01944 1.04093 1.23007 0.96700 0.96101 0.89642 1.21845 1.00541 0.92822 1.04538 1.23909 0.97495 0.93135 0.97885 1.21158 1.02430 1.02093 0.90983 1.22748 0.93325 1.03863 0.95102 1.23210 0.93706 1.04922 0.95853 1.25398 0.95740 0.79405 0.95337 1.19128 0.81154 0.87242 0.83006 1.91203 1.37306 1.16290 1.79274 1.43357 1.70191 1.11254 1.05243 1.18580 0.93965 0.92049 0.82323 1.20510 1.25192 0.98886 0.93118 1.20577 0.95544 0.95241 0.94651 1.21646 1.16942 0.94966 0.98951 1.18357 0.88304 0.93030 0.85626 1.19583 1.38660 0.92857 0.94371 0.89937 1.26135 0.95299 1.00118 0.95251 1.70291 1.25259 1.34015 0.98398 0.86514 0.79362 0.83011 0.79072 1.19646 1.20289 1.18763 1.68643 1.18640 1.10787 1.21183 1.88082 1.80006 1.34719 1.22848 1.24132 0.72384 0.89443 0.81545 1.90660 1.44570 1.40648 1.57809 0.89901 0.91383 0.92961 0.91884 0.91967 0.88867 0.91311 0.91475 0.90843 0.88780 0.90447 0.88294 0.89452 0.76053 0.88929 0.88494 0.88466 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.52 37.16 0.32 -1.62 16 2 C -0.05 -0.69 0.50 -149.95 -0.08 -0.76 16 3 C -0.14 -1.65 8.37 37.15 0.31 -1.34 16 4 C -0.12 -1.37 0.98 -150.14 -0.15 -1.52 16 5 C -0.11 -0.98 9.48 37.16 0.35 -0.63 16 6 C -0.11 -1.08 5.32 -24.06 -0.13 -1.21 16 7 C -0.14 -1.62 5.44 -24.13 -0.13 -1.75 16 8 C 0.08 1.20 1.19 -87.89 -0.10 1.10 16 9 C 0.52 9.80 7.01 -10.98 -0.08 9.72 16 10 O -0.38 -8.39 10.34 5.56 0.06 -8.33 16 11 N -0.65 -12.81 5.38 -11.40 -0.06 -12.88 16 12 C 0.37 8.72 7.43 -154.97 -1.15 7.57 16 13 C -0.35 -7.76 9.95 -38.89 -0.39 -8.14 16 14 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 15 C -0.30 -7.39 9.83 -38.66 -0.38 -7.77 16 16 C 0.27 7.35 6.55 -85.00 -0.56 6.79 16 17 C -0.42 -11.20 9.14 -37.73 -0.34 -11.54 16 18 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 19 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 20 N -0.66 -16.96 8.99 55.55 0.50 -16.46 16 21 Si 0.90 18.37 29.56 -169.99 -5.02 13.34 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 N -0.47 -12.64 5.74 -10.25 -0.06 -12.70 16 26 O -0.34 -5.28 10.34 -46.80 -0.48 -5.76 16 27 C 0.48 7.12 6.36 37.47 0.24 7.36 16 28 O -0.45 -7.73 17.87 -18.15 -0.32 -8.05 16 29 H 0.08 1.35 7.56 -51.93 -0.39 0.95 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.75 6.83 -51.93 -0.35 0.39 16 32 H 0.06 0.64 5.02 -51.93 -0.26 0.38 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.39 6.54 -51.93 -0.34 1.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.71 6.99 -51.92 -0.36 0.35 16 39 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.10 1.13 7.42 -51.93 -0.39 0.75 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.41 6.73 8.47 -40.82 -0.35 6.39 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 44 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 45 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 46 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -30.90 367.30 -8.83 -39.73 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.21 Total: 9.08 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.76 Total: -3.51 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.38 Total: -42.03 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.75 Total: -22.15 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.90 -8.83 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.295 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds