Wall clock time and date at job start Wed Apr 1 2020 02:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 112.11336 * 2 1 4 4 C 1.57283 * 113.17780 * 232.45126 * 2 1 3 5 5 C 1.53002 * 117.66659 * 59.34625 * 4 2 1 6 6 C 1.56214 * 100.40358 * 186.87831 * 4 2 1 7 7 C 1.54802 * 103.62040 * 36.58571 * 6 4 2 8 8 C 1.56086 * 103.92158 * 359.30037 * 7 6 4 9 9 C 1.50699 * 116.04149 * 198.08153 * 8 7 6 10 10 O 1.21276 * 120.00318 * 93.98396 * 9 8 7 11 11 N 1.34780 * 119.99936 * 274.25886 * 9 8 7 12 12 C 1.39270 * 119.99997 * 174.57999 * 11 9 8 13 13 C 1.39672 * 119.57440 * 185.32459 * 12 11 9 14 14 C 1.38654 * 119.49574 * 179.97438 * 13 12 11 15 15 C 1.38345 * 118.66764 * 0.02562 * 14 13 12 16 16 C 1.40582 * 119.13096 * 359.97438 * 15 14 13 17 17 C 1.41341 * 119.78622 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00003 * 0.02562 * 17 16 15 19 19 C 1.40026 * 119.99966 * 179.97438 * 17 16 15 20 20 N 1.30743 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46838 * 90.00531 * 21 19 17 23 23 H 1.48497 * 109.47140 * 210.00220 * 21 19 17 24 24 H 1.48500 * 109.46982 * 330.00605 * 21 19 17 25 25 N 1.31907 * 119.57269 * 5.05733 * 12 11 9 26 26 O 1.47747 * 104.29216 * 69.11542 * 8 7 6 27 27 C 1.36906 * 107.91316 * 289.61458 * 26 8 7 28 28 O 1.20823 * 126.00872 * 179.42986 * 27 26 8 29 29 H 1.08998 * 109.46869 * 293.52548 * 1 2 3 30 30 H 1.09001 * 109.46800 * 53.52431 * 1 2 3 31 31 H 1.08997 * 109.47086 * 173.52054 * 1 2 3 32 32 H 1.08999 * 109.46955 * 186.47278 * 3 2 1 33 33 H 1.09000 * 109.47296 * 306.47568 * 3 2 1 34 34 H 1.09000 * 109.47250 * 66.47810 * 3 2 1 35 35 H 1.09005 * 109.47199 * 180.34000 * 5 4 2 36 36 H 1.08999 * 109.47016 * 300.33522 * 5 4 2 37 37 H 1.08999 * 109.46959 * 60.33828 * 5 4 2 38 38 H 1.09008 * 110.59092 * 278.05705 * 6 4 2 39 39 H 1.08993 * 110.72858 * 155.18545 * 6 4 2 40 40 H 1.09000 * 110.53912 * 240.68788 * 7 6 4 41 41 H 1.09001 * 110.65540 * 117.96789 * 7 6 4 42 42 H 0.97000 * 119.99681 * 354.57452 * 11 9 8 43 43 H 1.08005 * 120.25230 * 359.96249 * 13 12 11 44 44 H 1.08003 * 120.66378 * 180.02562 * 14 13 12 45 45 H 1.08000 * 120.43593 * 179.97438 * 15 14 13 46 46 H 0.96996 * 120.00436 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1060 1.4174 0.0000 4 6 2.1491 -0.8812 -1.1464 5 6 1.7936 -0.5207 -2.5902 6 6 3.6624 -0.8192 -0.7638 7 6 3.6483 -0.8394 0.7840 8 6 2.1307 -0.8925 1.1450 9 6 1.7721 -0.5014 2.5556 10 8 1.4502 0.6409 2.8050 11 7 1.8144 -1.4200 3.5410 12 6 1.5935 -1.0356 4.8612 13 6 1.7492 -1.9709 5.8868 14 6 1.5293 -1.5864 7.2006 15 6 1.1593 -0.2780 7.4561 16 6 1.0191 0.6161 6.3804 17 6 0.6411 1.9557 6.6255 18 1 0.4613 2.2897 7.6368 19 6 0.5006 2.8502 5.5574 20 7 0.7186 2.4461 4.3333 21 14 0.0017 4.6210 5.8815 22 1 1.2177 5.4476 6.0893 23 1 -0.7581 5.1422 4.7169 24 1 -0.8510 4.6807 7.0958 25 7 1.2451 0.2085 5.1274 26 8 1.7005 -2.2392 0.7158 27 6 1.7047 -2.2663 -0.6530 28 8 1.4162 -3.2133 -1.3456 29 1 -0.3633 0.4102 0.9422 30 1 -0.3633 0.6109 -0.8264 31 1 -0.3633 -1.0211 -0.1160 32 1 3.1887 1.3696 -0.1158 33 1 1.6768 1.9840 -0.8263 34 1 1.8628 1.9084 0.9423 35 1 2.2862 -1.2158 -3.2701 36 1 0.7138 -0.5842 -2.7252 37 1 2.1274 0.4947 -2.8038 38 1 4.1132 0.1028 -1.1311 39 1 4.1947 -1.6867 -1.1537 40 1 4.1047 0.0666 1.1825 41 1 4.1623 -1.7233 1.1617 42 1 1.9987 -2.3488 3.3305 43 1 2.0384 -2.9861 5.6581 44 1 1.6447 -2.2940 8.0083 45 1 0.9804 0.0521 8.4688 46 1 0.6217 3.0657 3.5934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:58 Heat of formation + Delta-G solvation = -57.050434 kcal Electronic energy + Delta-G solvation = -31986.832959 eV Core-core repulsion = 27842.416581 eV Total energy + Delta-G solvation = -4144.416377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.43544 -40.88789 -39.48859 -38.74026 -36.92905 -35.94203 -34.87085 -33.03536 -32.35269 -32.13244 -30.98559 -28.44198 -27.92236 -27.26417 -26.12061 -24.22187 -23.50430 -23.15774 -21.86605 -20.62074 -20.15645 -19.41139 -18.18927 -17.94047 -17.89527 -17.39250 -16.79575 -16.50280 -16.29338 -15.89039 -15.78300 -15.57654 -15.31242 -14.85680 -14.64162 -14.49352 -14.21336 -14.03167 -13.78212 -13.65924 -13.46875 -13.32229 -13.21617 -12.98585 -12.88383 -12.85517 -12.73408 -12.56072 -12.34176 -12.30100 -12.20781 -12.10900 -11.78052 -11.69281 -11.54225 -11.20919 -11.04259 -10.88373 -10.57025 -9.91092 -9.16844 -8.88055 -8.06605 -6.41115 0.81389 0.92598 1.19917 1.43223 1.48180 1.54518 1.59197 1.95238 2.10796 2.28428 2.55707 2.85927 2.95449 3.09521 3.35348 3.66123 3.83927 3.91500 3.97677 4.04268 4.14156 4.22285 4.32666 4.39568 4.65550 4.70721 4.73146 4.75611 4.77542 4.83829 4.86058 4.89698 4.92052 4.94710 5.00502 5.01193 5.02048 5.14526 5.28040 5.28975 5.33569 5.51733 5.66367 5.78234 5.91366 6.13630 6.27060 6.31873 6.62610 6.79504 7.06568 7.43449 8.28200 8.56892 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.004195 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.756614 B = 6672.626641 C = 8141.453865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C -0.135 4.135 4 C -0.102 4.102 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.136 4.136 8 C 0.078 3.922 9 C 0.509 3.491 10 O -0.412 6.412 11 N -0.651 5.651 12 C 0.350 3.650 13 C -0.348 4.348 14 C -0.034 4.034 15 C -0.327 4.327 16 C 0.238 3.762 17 C -0.462 4.462 18 H 0.084 0.916 19 C 0.017 3.983 20 N -0.687 5.687 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.261 1.261 25 N -0.501 5.501 26 O -0.359 6.359 27 C 0.478 3.522 28 O -0.483 6.483 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.417 0.583 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.105 0.895 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -1.545 -14.447 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C -0.191 4.191 4 C -0.103 4.103 5 C -0.167 4.167 6 C -0.141 4.141 7 C -0.174 4.174 8 C 0.037 3.963 9 C 0.289 3.711 10 O -0.276 6.276 11 N -0.299 5.299 12 C 0.112 3.888 13 C -0.374 4.374 14 C -0.058 4.058 15 C -0.349 4.349 16 C 0.113 3.887 17 C -0.492 4.492 18 H 0.102 0.898 19 C -0.209 4.209 20 N -0.306 5.306 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.185 1.185 25 N -0.221 5.221 26 O -0.276 6.276 27 C 0.320 3.680 28 O -0.368 6.368 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.254 0.746 43 H 0.143 0.857 44 H 0.153 0.847 45 H 0.123 0.877 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.716 -0.622 -15.397 16.435 hybrid contribution -0.366 -0.940 1.381 1.710 sum 5.350 -1.562 -14.015 15.083 Atomic orbital electron populations 1.21653 0.93322 1.01288 1.03229 1.23062 0.95889 0.96884 0.89551 1.21802 1.02036 0.91721 1.03577 1.23978 0.98326 0.89463 0.98562 1.21282 1.02453 1.03996 0.89006 1.22841 0.92069 1.06265 0.92972 1.23275 0.90920 1.05379 0.97831 1.25201 0.98334 0.79694 0.93029 1.19787 0.80032 0.86767 0.84467 1.91199 1.38323 1.17631 1.80413 1.43423 1.70033 1.12190 1.04259 1.19050 0.93628 0.91823 0.84340 1.20939 1.23552 1.00043 0.92848 1.21009 0.93866 0.94999 0.95896 1.21826 1.18282 0.95985 0.98857 1.18836 0.89073 0.94102 0.86674 1.19889 1.40585 0.93694 0.95082 0.89768 1.26915 0.95059 1.04176 0.94781 1.70439 1.25687 1.35418 0.99034 0.85366 0.79009 0.77372 0.78924 1.19023 1.19596 1.18514 1.68624 1.19687 1.12436 1.21358 1.88027 1.80216 1.35263 1.24134 1.24804 0.71538 0.90615 0.80996 1.90637 1.45865 1.42149 1.58150 0.93386 0.88753 0.94262 0.89713 0.89500 0.92488 0.90398 0.91934 0.87980 0.85508 0.89041 0.87992 0.88941 0.74616 0.85708 0.84700 0.87670 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.52 71.98 0.61 -3.17 16 2 C -0.05 -1.29 0.50 -49.23 -0.02 -1.31 16 3 C -0.13 -2.90 8.37 71.98 0.60 -2.29 16 4 C -0.10 -1.99 0.98 -49.35 -0.05 -2.04 16 5 C -0.11 -1.55 9.48 71.98 0.68 -0.87 16 6 C -0.10 -1.59 5.32 32.33 0.17 -1.42 16 7 C -0.14 -2.90 5.44 32.28 0.18 -2.72 16 8 C 0.08 2.26 1.19 -9.02 -0.01 2.24 16 9 C 0.51 19.90 7.01 87.66 0.61 20.51 16 10 O -0.41 -19.11 10.34 -3.02 -0.03 -19.14 16 11 N -0.65 -26.08 5.38 -308.36 -1.66 -27.74 16 12 C 0.35 16.91 7.43 133.25 0.99 17.90 16 13 C -0.35 -15.17 9.95 22.72 0.23 -14.94 16 14 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 15 C -0.33 -16.31 9.83 22.87 0.22 -16.09 16 16 C 0.24 13.42 6.55 40.20 0.26 13.68 16 17 C -0.46 -25.44 9.14 23.47 0.21 -25.22 16 18 H 0.08 4.38 7.85 -2.91 -0.02 4.35 16 19 C 0.02 0.86 5.50 85.29 0.47 1.33 16 20 N -0.69 -36.74 8.99 21.84 0.20 -36.55 16 21 Si 0.97 38.72 29.56 68.60 2.03 40.75 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 N -0.50 -27.84 5.74 -186.35 -1.07 -28.91 16 26 O -0.36 -11.10 10.34 -81.11 -0.84 -11.94 16 27 C 0.48 13.51 6.36 72.18 0.46 13.97 16 28 O -0.48 -16.10 17.87 21.40 0.38 -15.72 16 29 H 0.05 1.65 7.56 -2.39 -0.02 1.63 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.14 6.83 -2.39 -0.02 1.13 16 32 H 0.08 1.42 5.02 -2.39 -0.01 1.41 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.70 6.54 -2.39 -0.02 1.69 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.13 1.20 6.99 -2.38 -0.02 1.19 16 39 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.10 2.13 7.42 -2.39 -0.02 2.11 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.42 13.98 8.47 -92.71 -0.79 13.20 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.27 13.56 8.29 -92.71 -0.77 12.79 16 Total: -1.00 -71.79 367.30 5.10 -66.69 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.24 Total: 34.24 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.85 Total: -1.69 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.53 Total: -93.20 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -0.49 Total: -46.79 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -71.79 5.10 -66.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.643 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds