Wall clock time and date at job start Wed Apr 1 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99632 * 2 1 4 4 H 1.48498 * 109.46855 * 269.99613 * 3 2 1 5 5 H 1.48504 * 109.47283 * 29.99906 * 3 2 1 6 6 H 1.48503 * 109.46965 * 149.99951 * 3 2 1 7 7 C 1.38948 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99437 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99558 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99845 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47203 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00196 * 180.02562 * 13 12 10 15 15 O 1.20824 * 119.99841 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00313 * 180.02562 * 14 13 12 17 17 C 1.50697 * 112.82224 * 309.66751 * 16 14 13 18 18 C 1.38678 * 120.42112 * 50.35609 * 17 16 14 19 19 C 1.38627 * 118.42399 * 179.97438 * 18 17 16 20 20 C 1.38220 * 119.16050 * 0.02562 * 19 18 17 21 21 N 1.31860 * 120.76284 * 359.97438 * 20 19 18 22 22 C 1.31884 * 121.72590 * 0.02562 * 21 20 19 23 23 C 1.53951 * 113.57631 * 80.75430 * 16 14 13 24 24 C 1.53075 * 86.72343 * 89.97935 * 23 16 14 25 25 C 1.52904 * 121.17482 * 150.59065 * 24 23 16 26 26 C 1.53948 * 86.78621 * 100.74207 * 25 24 23 27 27 C 1.52912 * 121.06375 * 259.11930 * 24 23 16 28 28 C 1.52907 * 88.07086 * 24.83038 * 24 23 16 29 29 H 0.96998 * 120.00077 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00004 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47037 * 60.00336 * 12 10 9 32 32 H 1.08998 * 109.47087 * 300.00217 * 12 10 9 33 33 H 1.07999 * 120.78603 * 359.97438 * 18 17 16 34 34 H 1.08000 * 120.41839 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.62072 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.61187 * 180.02562 * 22 21 20 37 37 H 1.09007 * 113.65858 * 204.42328 * 23 16 14 38 38 H 1.08994 * 113.66877 * 335.47438 * 23 16 14 39 39 H 1.08998 * 113.66449 * 215.22048 * 25 24 23 40 40 H 1.09006 * 113.66635 * 346.27144 * 25 24 23 41 41 H 1.08998 * 113.58460 * 270.13032 * 26 25 24 42 42 H 1.09006 * 113.64967 * 139.34218 * 26 25 24 43 43 H 1.09002 * 113.65678 * 13.63156 * 27 24 23 44 44 H 1.08994 * 113.66067 * 144.68381 * 27 24 23 45 45 H 1.08994 * 113.66238 * 220.69748 * 28 24 23 46 46 H 1.09004 * 113.74256 * 89.65033 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0016 14 6 1.6745 -7.2069 0.0016 15 8 0.4767 -7.3653 0.0008 16 6 2.5925 -8.4020 0.0027 17 6 3.6525 -8.3258 -1.0657 18 6 4.4298 -7.1856 -1.2037 19 6 5.3932 -7.1604 -2.2001 20 6 5.5457 -8.2645 -3.0176 21 7 4.7885 -9.3320 -2.8574 22 6 3.8624 -9.3911 -1.9203 23 6 3.1464 -8.7518 1.3959 24 6 1.9182 -9.6503 1.5619 25 6 1.9674 -10.9048 2.4347 26 6 1.2561 -10.0738 3.5180 27 6 0.7103 -9.1922 2.3800 28 6 1.8491 -9.7496 0.0376 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6170 -4.9209 -0.8887 32 1 0.6176 -4.9205 0.8913 33 1 4.2878 -6.3374 -0.5504 34 1 6.0167 -6.2891 -2.3360 35 1 6.2943 -8.2530 -3.7960 36 1 3.2617 -10.2829 -1.8192 37 1 4.0884 -9.2995 1.3673 38 1 3.1671 -7.9063 2.0834 39 1 1.3664 -11.7289 2.0504 40 1 2.9780 -11.2077 2.7089 41 1 1.9405 -9.5501 4.1854 42 1 0.4819 -10.6239 4.0530 43 1 0.7167 -8.1269 2.6105 44 1 -0.2441 -9.5349 1.9803 45 1 0.8348 -9.7001 -0.3584 46 1 2.4253 -10.5779 -0.3748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885068930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:47 Heat of formation + Delta-G solvation = -37.821695 kcal Electronic energy + Delta-G solvation = -30304.731872 eV Core-core repulsion = 26161.149315 eV Total energy + Delta-G solvation = -4143.582557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86964 -39.87522 -39.58056 -38.11721 -36.22267 -35.54033 -34.04483 -32.35446 -31.42495 -30.96272 -28.71910 -26.55332 -26.10480 -25.70347 -24.62628 -23.57238 -22.82122 -22.35193 -19.80676 -19.62151 -18.42200 -18.11772 -17.53554 -17.07172 -16.62336 -16.40044 -16.03833 -15.71887 -15.55364 -15.39393 -14.71725 -14.49955 -14.26470 -14.07194 -13.82734 -13.80419 -13.35072 -13.07896 -12.86718 -12.67726 -12.50242 -12.39833 -12.18477 -12.03445 -11.75874 -11.65672 -11.39115 -11.16988 -11.16291 -10.58206 -10.47971 -10.45846 -10.40529 -10.34402 -10.30925 -10.16556 -9.70837 -9.64521 -9.47020 -9.02917 -8.57416 -8.12598 -6.53904 -3.96148 0.97511 1.28302 2.22046 2.59594 3.10035 3.20718 3.26369 3.68829 3.74967 3.98189 4.05938 4.09086 4.21442 4.30505 4.41211 4.49786 4.61329 4.67376 4.77106 4.89348 5.01211 5.11000 5.13767 5.19593 5.22330 5.36637 5.41893 5.46569 5.50656 5.54624 5.60582 5.64188 5.67545 5.69557 5.72275 5.77545 5.82561 5.98363 6.01591 6.17492 6.24375 6.26613 6.29003 6.55432 6.66409 7.43818 7.78919 7.87923 7.91680 8.43669 9.02767 9.34840 9.84084 10.63222 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.003051 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.996164 B = 9174.791397 C =10963.839912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.059 3.941 13 O -0.322 6.322 14 C 0.485 3.515 15 O -0.499 6.499 16 C -0.031 4.031 17 C -0.131 4.131 18 C -0.049 4.049 19 C -0.167 4.167 20 C 0.095 3.905 21 N -0.488 5.488 22 C 0.103 3.897 23 C -0.089 4.089 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.110 4.110 28 C -0.107 4.107 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -20.512 1.800 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.019 4.019 13 O -0.237 6.237 14 C 0.327 3.673 15 O -0.386 6.386 16 C -0.033 4.033 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.187 4.187 20 C -0.062 4.062 21 N -0.197 5.197 22 C -0.054 4.054 23 C -0.126 4.126 24 C -0.107 4.107 25 C -0.160 4.160 26 C -0.180 4.180 27 C -0.147 4.147 28 C -0.143 4.143 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.253 -21.059 1.244 21.520 hybrid contribution -0.572 1.858 0.429 1.991 sum 3.680 -19.200 1.673 19.621 Atomic orbital electron populations 1.69610 1.06017 1.28539 1.49503 1.25314 0.95679 0.99885 0.96822 0.85807 0.79248 0.80430 0.78527 1.20241 1.20781 1.19253 1.19718 0.93463 0.81727 1.48296 0.87595 1.41707 1.09377 1.04106 1.63655 1.19277 0.88328 0.84005 0.86060 1.90543 1.13331 1.86783 1.55446 1.22783 0.90955 0.84653 1.03461 1.86514 1.40207 1.14064 1.82867 1.22700 0.87877 0.84217 0.72495 1.90640 1.16222 1.86583 1.45177 1.20346 0.93902 0.92303 0.96781 1.20302 0.98304 0.96418 0.98258 1.21972 0.91726 0.97526 0.96269 1.22243 0.99701 1.00195 0.96561 1.22807 0.96854 0.88839 0.97701 1.67731 1.05481 1.27099 1.19367 1.22678 0.94775 0.97677 0.90275 1.22798 0.97680 0.99481 0.92641 1.22495 0.96664 0.97483 0.94049 1.22710 1.00962 0.95955 0.96327 1.22856 1.00119 0.98534 0.96445 1.22621 0.96774 1.00023 0.95276 1.22960 1.01656 0.93498 0.96225 0.91585 0.77176 0.89635 0.89569 0.82575 0.84361 0.82803 0.82657 0.88026 0.89905 0.89769 0.91292 0.90251 0.91478 0.91513 0.89387 0.89115 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 10 C 0.44 10.22 7.86 -10.98 -0.09 10.13 16 11 O -0.58 -15.23 16.08 -14.11 -0.23 -15.46 16 12 C 0.06 1.09 5.94 36.01 0.21 1.31 16 13 O -0.32 -5.72 7.38 -45.89 -0.34 -6.06 16 14 C 0.49 7.50 6.51 36.01 0.23 7.73 16 15 O -0.50 -8.28 14.69 -18.75 -0.28 -8.56 16 16 C -0.03 -0.38 1.14 -155.83 -0.18 -0.56 16 17 C -0.13 -1.65 5.02 -104.48 -0.52 -2.17 16 18 C -0.05 -0.69 9.14 -39.28 -0.36 -1.04 16 19 C -0.17 -2.06 10.11 -39.44 -0.40 -2.46 16 20 C 0.09 1.09 11.18 -17.55 -0.20 0.90 16 21 N -0.49 -6.21 10.36 -13.25 -0.14 -6.35 16 22 C 0.10 1.20 10.36 -17.55 -0.18 1.02 16 23 C -0.09 -0.91 6.98 -26.20 -0.18 -1.10 16 24 C -0.11 -1.01 0.97 -154.63 -0.15 -1.16 16 25 C -0.12 -0.93 7.84 -26.29 -0.21 -1.14 16 26 C -0.14 -1.18 8.08 -25.75 -0.21 -1.39 16 27 C -0.11 -1.13 6.63 -26.28 -0.17 -1.30 16 28 C -0.11 -1.04 6.24 -26.28 -0.16 -1.20 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 31 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 32 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 33 H 0.16 2.50 6.38 -52.49 -0.33 2.16 16 34 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.16 1.43 5.79 -52.48 -0.30 1.13 16 37 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.98 7.40 -51.93 -0.38 0.59 16 46 H 0.10 0.76 5.99 -51.93 -0.31 0.45 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -31.35 383.26 -8.60 -39.94 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.23 Total: 12.24 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.80 Total: -0.19 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.53 Total: -43.08 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.84 Total: -30.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.35 -8.60 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885068930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.121 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds