Wall clock time and date at job start Wed Apr 1 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99632 * 2 1 4 4 H 1.48498 * 109.46855 * 269.99613 * 3 2 1 5 5 H 1.48504 * 109.47283 * 29.99906 * 3 2 1 6 6 H 1.48503 * 109.46965 * 149.99951 * 3 2 1 7 7 C 1.38948 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99437 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99558 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99845 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47203 * 180.02562 * 12 10 9 14 14 C 1.34227 * 117.00196 * 180.02562 * 13 12 10 15 15 O 1.20824 * 119.99841 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00313 * 180.02562 * 14 13 12 17 17 C 1.50697 * 112.82224 * 309.66751 * 16 14 13 18 18 C 1.38678 * 120.42112 * 50.35609 * 17 16 14 19 19 C 1.38627 * 118.42399 * 179.97438 * 18 17 16 20 20 C 1.38220 * 119.16050 * 0.02562 * 19 18 17 21 21 N 1.31860 * 120.76284 * 359.97438 * 20 19 18 22 22 C 1.31884 * 121.72590 * 0.02562 * 21 20 19 23 23 C 1.53951 * 113.57631 * 80.75430 * 16 14 13 24 24 C 1.53075 * 86.72343 * 89.97935 * 23 16 14 25 25 C 1.52904 * 121.17482 * 150.59065 * 24 23 16 26 26 C 1.53948 * 86.78621 * 100.74207 * 25 24 23 27 27 C 1.52912 * 121.06375 * 259.11930 * 24 23 16 28 28 C 1.52907 * 88.07086 * 24.83038 * 24 23 16 29 29 H 0.96998 * 120.00077 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00004 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47037 * 60.00336 * 12 10 9 32 32 H 1.08998 * 109.47087 * 300.00217 * 12 10 9 33 33 H 1.07999 * 120.78603 * 359.97438 * 18 17 16 34 34 H 1.08000 * 120.41839 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.62072 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.61187 * 180.02562 * 22 21 20 37 37 H 1.09007 * 113.65858 * 204.42328 * 23 16 14 38 38 H 1.08994 * 113.66877 * 335.47438 * 23 16 14 39 39 H 1.08998 * 113.66449 * 215.22048 * 25 24 23 40 40 H 1.09006 * 113.66635 * 346.27144 * 25 24 23 41 41 H 1.08998 * 113.58460 * 270.13032 * 26 25 24 42 42 H 1.09006 * 113.64967 * 139.34218 * 26 25 24 43 43 H 1.09002 * 113.65678 * 13.63156 * 27 24 23 44 44 H 1.08994 * 113.66067 * 144.68381 * 27 24 23 45 45 H 1.08994 * 113.66238 * 220.69748 * 28 24 23 46 46 H 1.09004 * 113.74256 * 89.65033 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0016 14 6 1.6745 -7.2069 0.0016 15 8 0.4767 -7.3653 0.0008 16 6 2.5925 -8.4020 0.0027 17 6 3.6525 -8.3258 -1.0657 18 6 4.4298 -7.1856 -1.2037 19 6 5.3932 -7.1604 -2.2001 20 6 5.5457 -8.2645 -3.0176 21 7 4.7885 -9.3320 -2.8574 22 6 3.8624 -9.3911 -1.9203 23 6 3.1464 -8.7518 1.3959 24 6 1.9182 -9.6503 1.5619 25 6 1.9674 -10.9048 2.4347 26 6 1.2561 -10.0738 3.5180 27 6 0.7103 -9.1922 2.3800 28 6 1.8491 -9.7496 0.0376 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6170 -4.9209 -0.8887 32 1 0.6176 -4.9205 0.8913 33 1 4.2878 -6.3374 -0.5504 34 1 6.0167 -6.2891 -2.3360 35 1 6.2943 -8.2530 -3.7960 36 1 3.2617 -10.2829 -1.8192 37 1 4.0884 -9.2995 1.3673 38 1 3.1671 -7.9063 2.0834 39 1 1.3664 -11.7289 2.0504 40 1 2.9780 -11.2077 2.7089 41 1 1.9405 -9.5501 4.1854 42 1 0.4819 -10.6239 4.0530 43 1 0.7167 -8.1269 2.6105 44 1 -0.2441 -9.5349 1.9803 45 1 0.8348 -9.7001 -0.3584 46 1 2.4253 -10.5779 -0.3748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885068930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:46 Heat of formation + Delta-G solvation = -54.658929 kcal Electronic energy + Delta-G solvation = -30305.461989 eV Core-core repulsion = 26161.149315 eV Total energy + Delta-G solvation = -4144.312674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.85552 -41.04885 -40.59666 -39.88833 -37.57258 -36.43869 -36.05196 -33.44791 -33.30486 -31.85620 -30.31161 -27.57564 -27.00606 -26.58947 -26.27318 -24.56135 -23.83349 -23.24343 -21.48001 -20.90059 -20.10813 -19.33611 -18.54907 -18.14789 -17.97358 -17.66552 -17.38844 -17.03626 -16.54523 -16.51421 -16.13890 -15.85475 -15.63547 -15.35874 -15.15865 -14.86286 -14.49864 -14.18526 -14.00275 -13.91311 -13.61711 -13.58660 -13.45376 -13.15019 -13.02656 -12.95280 -12.70226 -12.49903 -12.18756 -12.14020 -11.95928 -11.91289 -11.71045 -11.59583 -11.14184 -11.08886 -10.94447 -10.70183 -10.53225 -10.42371 -10.14222 -9.95047 -8.54642 -6.05345 0.03723 0.28428 0.99271 1.28687 1.33866 1.42613 1.55258 1.83894 2.26989 2.79195 2.96911 3.10764 3.15346 3.24632 3.40693 3.44521 3.57458 3.65138 3.78617 3.91712 3.98433 4.00458 4.06850 4.08247 4.13111 4.17303 4.25208 4.52424 4.57109 4.61012 4.65664 4.77949 4.81761 4.91542 4.94768 4.97049 5.01202 5.12756 5.18999 5.23261 5.30423 5.32942 5.34890 5.47491 5.56623 5.71469 5.86164 6.41901 6.56543 6.95084 7.00201 7.36853 7.89586 8.62420 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.003051 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.996164 B = 9174.791397 C =10963.839912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.612 6.612 12 C 0.069 3.931 13 O -0.336 6.336 14 C 0.482 3.518 15 O -0.512 6.512 16 C -0.036 4.036 17 C -0.133 4.133 18 C -0.071 4.071 19 C -0.175 4.175 20 C 0.097 3.903 21 N -0.501 5.501 22 C 0.106 3.894 23 C -0.085 4.085 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.139 4.139 27 C -0.121 4.121 28 C -0.096 4.096 29 H 0.281 0.719 30 H 0.399 0.601 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -22.445 1.504 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.225 3.775 11 O -0.498 6.498 12 C -0.008 4.008 13 O -0.251 6.251 14 C 0.325 3.675 15 O -0.400 6.400 16 C -0.038 4.038 17 C -0.135 4.135 18 C -0.096 4.096 19 C -0.195 4.195 20 C -0.059 4.059 21 N -0.209 5.209 22 C -0.050 4.050 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.145 4.145 26 C -0.176 4.176 27 C -0.158 4.158 28 C -0.133 4.133 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.201 0.799 36 H 0.201 0.799 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.547 -23.008 0.951 23.472 hybrid contribution -0.688 2.452 0.515 2.598 sum 3.858 -20.556 1.466 20.966 Atomic orbital electron populations 1.69672 1.06991 1.29735 1.49182 1.26124 0.96560 1.02599 0.95648 0.84868 0.77952 0.76378 0.78805 1.19470 1.19454 1.19426 1.19722 0.92953 0.83297 1.50635 0.89638 1.41742 1.09505 1.04219 1.64061 1.19993 0.88122 0.85177 0.84215 1.90513 1.15118 1.87600 1.56585 1.22525 0.90389 0.82966 1.04936 1.86553 1.40380 1.14835 1.83353 1.23453 0.88425 0.84036 0.71568 1.90623 1.16972 1.86586 1.45859 1.20506 0.93821 0.91667 0.97823 1.20334 0.98168 0.96344 0.98689 1.21871 0.93345 0.97491 0.96942 1.22398 0.99561 1.01087 0.96416 1.23244 0.96928 0.87986 0.97743 1.67820 1.05935 1.27466 1.19703 1.23067 0.94525 0.98107 0.89301 1.22854 0.99050 0.99343 0.91018 1.22470 0.95571 0.98374 0.94169 1.22686 1.01889 0.95182 0.94761 1.22849 1.00347 0.98209 0.96199 1.22671 0.97345 0.98766 0.97046 1.23044 1.01227 0.92596 0.96417 0.90968 0.76708 0.88160 0.87863 0.85461 0.83567 0.79907 0.79919 0.86031 0.91568 0.88270 0.89928 0.90444 0.90443 0.94229 0.89614 0.90017 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.80 29.55 68.60 2.03 43.82 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.51 5.29 -306.98 -1.62 -30.13 16 10 C 0.44 21.21 7.86 87.66 0.69 21.90 16 11 O -0.61 -33.82 16.08 15.73 0.25 -33.56 16 12 C 0.07 2.63 5.94 71.24 0.42 3.05 16 13 O -0.34 -12.37 7.38 -45.03 -0.33 -12.71 16 14 C 0.48 15.10 6.51 71.24 0.46 15.57 16 15 O -0.51 -17.13 14.69 21.97 0.32 -16.80 16 16 C -0.04 -0.85 1.14 -53.04 -0.06 -0.91 16 17 C -0.13 -3.25 5.02 -19.78 -0.10 -3.35 16 18 C -0.07 -2.01 9.14 22.47 0.21 -1.80 16 19 C -0.18 -4.28 10.11 22.36 0.23 -4.05 16 20 C 0.10 2.08 11.18 84.68 0.95 3.03 16 21 N -0.50 -11.62 10.36 -195.85 -2.03 -13.65 16 22 C 0.11 2.26 10.36 84.67 0.88 3.13 16 23 C -0.09 -1.68 6.98 30.94 0.22 -1.47 16 24 C -0.11 -1.82 0.97 -52.26 -0.05 -1.87 16 25 C -0.11 -1.32 7.84 30.88 0.24 -1.08 16 26 C -0.14 -2.07 8.08 31.23 0.25 -1.82 16 27 C -0.12 -2.43 6.63 30.89 0.20 -2.22 16 28 C -0.10 -1.66 6.24 30.88 0.19 -1.47 16 29 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 31 H 0.10 3.51 8.13 -2.39 -0.02 3.50 16 32 H 0.10 3.56 8.13 -2.39 -0.02 3.54 16 33 H 0.13 4.37 6.38 -2.91 -0.02 4.35 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.18 2.71 5.79 -2.91 -0.02 2.69 16 37 H 0.12 1.90 8.09 -2.38 -0.02 1.89 16 38 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 46 H 0.13 1.46 5.99 -2.38 -0.01 1.45 16 Total: -1.00 -68.97 383.26 5.20 -63.76 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.29 Total: 38.85 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.01 Total: 8.70 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.37 Total: -92.07 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: 0.24 Total: -63.07 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.97 5.20 -63.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885068930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.106 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds