Wall clock time and date at job start Wed Apr 1 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.11011 * 2 1 4 4 C 1.57284 * 112.47467 * 127.92453 * 2 1 3 5 5 C 1.52998 * 116.94147 * 291.38630 * 4 2 1 6 6 C 1.56206 * 101.26974 * 59.14995 * 4 2 1 7 7 C 1.54806 * 103.62731 * 36.84007 * 6 4 2 8 8 C 1.56094 * 103.91274 * 359.29678 * 7 6 4 9 9 C 1.50708 * 116.03719 * 197.25366 * 8 7 6 10 10 O 1.21271 * 119.99913 * 69.58081 * 9 8 7 11 11 N 1.34774 * 119.99700 * 249.57407 * 9 8 7 12 12 C 1.37216 * 120.00004 * 197.35608 * 11 9 8 13 13 H 1.08003 * 120.00198 * 224.93338 * 12 11 9 14 14 C 1.38893 * 119.99772 * 44.92761 * 12 11 9 15 15 N 1.31410 * 120.00115 * 28.47776 * 14 12 11 16 16 Si 1.86800 * 119.99837 * 208.47090 * 14 12 11 17 17 H 1.48496 * 109.47369 * 60.00242 * 16 14 12 18 18 H 1.48501 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47221 * 300.00254 * 16 14 12 20 20 C 1.39428 * 120.00180 * 17.35353 * 11 9 8 21 21 C 1.39063 * 119.69871 * 12.97123 * 20 11 9 22 22 C 1.38379 * 119.10107 * 179.97438 * 21 20 11 23 23 C 1.38831 * 118.49154 * 359.97438 * 22 21 20 24 24 C 1.38143 * 119.30943 * 0.02562 * 23 22 21 25 25 N 1.31885 * 120.85505 * 359.74173 * 24 23 22 26 26 O 1.47814 * 105.22368 * 67.92810 * 8 7 6 27 27 C 1.35045 * 108.89369 * 291.80615 * 26 8 7 28 28 O 1.20820 * 126.27900 * 177.75785 * 27 26 8 29 29 H 1.08995 * 109.47294 * 292.07214 * 1 2 3 30 30 H 1.09005 * 109.47118 * 52.07388 * 1 2 3 31 31 H 1.09008 * 109.47178 * 172.06952 * 1 2 3 32 32 H 1.09000 * 109.47101 * 187.92138 * 3 2 1 33 33 H 1.08997 * 109.46749 * 307.92638 * 3 2 1 34 34 H 1.09001 * 109.46636 * 67.92339 * 3 2 1 35 35 H 1.09001 * 109.47102 * 302.10046 * 5 4 2 36 36 H 1.08998 * 109.47434 * 62.10433 * 5 4 2 37 37 H 1.09005 * 109.47407 * 182.10236 * 5 4 2 38 38 H 1.08999 * 110.59523 * 155.37243 * 6 4 2 39 39 H 1.09003 * 110.59613 * 278.15195 * 6 4 2 40 40 H 1.08994 * 110.54190 * 117.90209 * 7 6 4 41 41 H 1.08999 * 110.53893 * 240.54696 * 7 6 4 42 42 H 0.96998 * 120.00059 * 184.98268 * 15 14 12 43 43 H 1.08006 * 120.44650 * 359.97438 * 21 20 11 44 44 H 1.07998 * 120.75258 * 180.02562 * 22 21 20 45 45 H 1.07995 * 120.34056 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.56961 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1059 1.4175 0.0000 4 6 2.1312 -0.8933 1.1465 5 6 1.9366 -0.4020 2.5823 6 6 1.5220 -2.2887 0.7975 7 6 1.5325 -2.3145 -0.7503 8 6 2.1285 -0.9268 -1.1448 9 6 1.8982 -0.4884 -2.5682 10 8 0.7832 -0.1852 -2.9364 11 7 2.9314 -0.4332 -3.4318 12 6 2.8158 0.2854 -4.5949 13 1 3.1592 -0.1375 -5.5275 14 6 2.2571 1.5569 -4.5730 15 7 2.3492 2.2965 -3.4907 16 14 1.3750 2.2155 -6.0821 17 1 0.2323 1.3273 -6.4146 18 1 0.8732 3.5852 -5.8037 19 1 2.3187 2.2580 -7.2280 20 6 4.1179 -1.1064 -3.1433 21 6 4.1462 -2.0432 -2.1159 22 6 5.3302 -2.7044 -1.8405 23 6 6.4494 -2.4051 -2.6055 24 6 6.3490 -1.4630 -3.6109 25 7 5.2057 -0.8519 -3.8536 26 8 3.5397 -0.9720 -0.7075 27 6 3.5789 -0.9911 0.6422 28 8 4.5711 -1.0660 1.3276 29 1 -0.3633 0.3861 0.9523 30 1 -0.3634 0.6317 -0.8107 31 1 -0.3634 -1.0179 -0.1418 32 1 3.1856 1.3710 -0.1416 33 1 1.6574 1.9918 -0.8106 34 1 1.8847 1.8995 0.9524 35 1 2.3700 0.5926 2.6879 36 1 0.8717 -0.3605 2.8110 37 1 2.4296 -1.0881 3.2711 38 1 2.1434 -3.0894 1.1984 39 1 0.5036 -2.3684 1.1777 40 1 2.1681 -3.1213 -1.1151 41 1 0.5194 -2.4222 -1.1378 42 1 1.8979 3.1541 -3.4495 43 1 3.2562 -2.2518 -1.5407 44 1 5.3822 -3.4373 -1.0489 45 1 7.3888 -2.9029 -2.4161 46 1 7.2169 -1.2272 -4.2089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:01 Heat of formation + Delta-G solvation = 16.279301 kcal Electronic energy + Delta-G solvation = -33866.687406 eV Core-core repulsion = 29725.450844 eV Total energy + Delta-G solvation = -4141.236562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.04954 -41.25843 -39.92338 -38.82819 -37.32832 -36.39010 -34.26927 -33.54580 -32.91774 -32.08973 -30.73710 -28.81941 -28.04765 -26.76174 -26.21247 -24.51757 -24.01953 -23.53527 -22.35465 -20.79843 -20.14439 -19.40109 -18.86000 -18.09626 -17.98449 -17.30574 -17.05888 -16.49728 -16.35976 -16.04802 -15.95800 -15.62414 -15.38659 -15.06235 -14.79064 -14.63855 -14.25766 -14.11347 -13.91484 -13.76669 -13.57243 -13.47725 -13.30222 -13.21730 -13.05540 -12.94432 -12.88303 -12.76831 -12.41589 -12.31328 -12.25599 -12.11698 -11.77628 -11.68070 -11.33819 -11.18732 -11.07956 -10.68519 -10.46718 -10.13953 -9.84164 -8.74850 -8.39100 -6.17413 0.20430 0.49726 1.08473 1.30419 1.39223 1.47411 1.69451 2.08711 2.17431 2.49739 2.65316 2.83882 2.92151 3.13014 3.27668 3.41530 3.57035 3.83069 3.86579 3.91768 3.97813 4.10835 4.13543 4.21056 4.30868 4.38230 4.41557 4.63041 4.65123 4.71045 4.78084 4.81060 4.88522 4.90134 4.93144 4.95090 5.01179 5.02035 5.18780 5.20452 5.32168 5.38730 5.41232 5.44161 5.52117 5.84611 6.07652 6.47576 6.52000 6.72137 7.10267 7.55973 7.76510 8.59615 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.006945 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.342494 B = 4030.449752 C = 5674.919789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.048 4.048 3 C -0.130 4.130 4 C -0.106 4.106 5 C -0.111 4.111 6 C -0.099 4.099 7 C -0.148 4.148 8 C 0.057 3.943 9 C 0.537 3.463 10 O -0.529 6.529 11 N -0.394 5.394 12 C -0.359 4.359 13 H 0.075 0.925 14 C 0.037 3.963 15 N -0.862 5.862 16 Si 0.971 3.029 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.265 1.265 20 C 0.313 3.687 21 C -0.195 4.195 22 C -0.078 4.078 23 C -0.206 4.206 24 C 0.092 3.908 25 N -0.534 5.534 26 O -0.309 6.309 27 C 0.437 3.563 28 O -0.491 6.491 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.190 0.810 44 H 0.153 0.847 45 H 0.162 0.838 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -10.161 12.672 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.108 4.108 5 C -0.167 4.167 6 C -0.136 4.136 7 C -0.185 4.185 8 C 0.018 3.982 9 C 0.326 3.674 10 O -0.406 6.406 11 N -0.105 5.105 12 C -0.485 4.485 13 H 0.092 0.908 14 C -0.171 4.171 15 N -0.495 5.495 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.190 1.190 20 C 0.084 3.916 21 C -0.218 4.218 22 C -0.104 4.104 23 C -0.228 4.228 24 C -0.066 4.066 25 N -0.250 5.250 26 O -0.227 6.227 27 C 0.282 3.718 28 O -0.378 6.378 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.205 0.795 44 H 0.171 0.829 45 H 0.180 0.820 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.518 -9.148 12.013 15.504 hybrid contribution 0.536 0.596 -0.718 1.076 sum -2.982 -8.552 11.294 14.478 Atomic orbital electron populations 1.21690 0.89304 1.04054 1.03173 1.23367 0.98871 0.93339 0.89355 1.21559 0.98804 0.95480 1.02880 1.24063 0.90386 0.98174 0.98198 1.21295 1.04681 1.01304 0.89443 1.22833 1.05168 0.93534 0.92066 1.23549 1.04330 0.91845 0.98764 1.25545 0.78201 1.00890 0.93550 1.19236 0.84199 0.78802 0.85208 1.90534 1.23163 1.49226 1.77718 1.41343 1.07658 1.42214 1.19331 1.19038 1.46488 0.97564 0.85388 0.90757 1.26024 0.95941 0.94345 1.00758 1.70108 1.36453 1.10907 1.32030 0.85367 0.79111 0.77095 0.79005 1.19736 1.20094 1.18995 1.19372 0.87231 0.93113 0.91904 1.22910 1.04547 0.98525 0.95773 1.21521 0.91746 0.98352 0.98789 1.22172 1.00596 1.01563 0.98447 1.22912 0.94204 0.92915 0.96610 1.67093 0.99523 1.27558 1.30802 1.89166 1.29948 1.81848 1.21724 1.25151 0.92324 0.70648 0.83650 1.90575 1.40845 1.46740 1.59650 0.88520 0.93794 0.89534 0.96121 0.92957 0.89101 0.92640 0.87648 0.90261 0.88372 0.84806 0.88116 0.86391 0.92102 0.79510 0.82887 0.82007 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.05 71.98 0.58 -2.57 16 2 C -0.05 -1.49 0.71 -48.51 -0.03 -1.52 16 3 C -0.13 -4.80 8.51 71.98 0.61 -4.19 16 4 C -0.11 -2.58 0.97 -49.35 -0.05 -2.63 16 5 C -0.11 -1.97 9.37 71.98 0.67 -1.30 16 6 C -0.10 -1.74 5.33 32.32 0.17 -1.57 16 7 C -0.15 -3.67 5.08 32.28 0.16 -3.51 16 8 C 0.06 2.08 0.52 -8.31 0.00 2.08 16 9 C 0.54 26.02 5.85 87.66 0.51 26.53 16 10 O -0.53 -27.70 15.16 -3.00 -0.05 -27.74 16 11 N -0.39 -21.25 2.71 -464.37 -1.26 -22.51 16 12 C -0.36 -21.00 8.39 84.01 0.70 -20.29 16 13 H 0.07 4.46 7.97 -2.91 -0.02 4.44 16 14 C 0.04 2.10 4.25 84.91 0.36 2.46 16 15 N -0.86 -49.82 13.06 21.65 0.28 -49.54 16 16 Si 0.97 45.47 29.64 68.60 2.03 47.51 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.31 15.49 6.74 132.90 0.90 16.39 16 21 C -0.20 -7.81 5.75 22.50 0.13 -7.68 16 22 C -0.08 -2.63 10.12 22.45 0.23 -2.40 16 23 C -0.21 -6.66 10.11 22.39 0.23 -6.43 16 24 C 0.09 3.53 11.18 84.66 0.95 4.47 16 25 N -0.53 -26.43 9.58 -192.95 -1.85 -28.28 16 26 O -0.31 -12.13 4.25 -60.04 -0.26 -12.38 16 27 C 0.44 15.07 6.47 72.19 0.47 15.53 16 28 O -0.49 -19.15 17.88 21.52 0.38 -18.76 16 29 H 0.10 1.72 7.97 -2.39 -0.02 1.70 16 30 H 0.04 1.43 7.58 -2.38 -0.02 1.41 16 31 H 0.09 1.77 5.23 -2.38 -0.01 1.76 16 32 H 0.02 0.87 6.83 -2.39 -0.02 0.86 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.64 7.47 -2.39 -0.02 2.63 16 35 H 0.05 1.12 7.48 -2.39 -0.02 1.11 16 36 H 0.10 1.19 7.97 -2.39 -0.02 1.17 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.10 1.45 8.09 -2.39 -0.02 1.43 16 39 H 0.13 1.37 7.44 -2.39 -0.02 1.35 16 40 H 0.10 2.36 6.42 -2.39 -0.02 2.35 16 41 H 0.12 2.64 7.16 -2.39 -0.02 2.63 16 42 H 0.27 14.79 8.32 -92.71 -0.77 14.02 16 43 H 0.19 6.69 1.12 -93.16 -0.10 6.59 16 44 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 46 H 0.17 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -80.06 358.47 6.80 -73.25 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.92 Total: 25.07 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.59 Total: 13.38 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -2.83 Total: -100.32 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: 0.08 Total: -58.89 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.51 kcal Total: -80.06 6.80 -73.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.534 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds