Wall clock time and date at job start Wed Apr 1 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00095 * 2 1 4 4 H 1.48500 * 109.46859 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46914 * 299.99498 * 3 2 1 6 6 H 1.48496 * 109.47118 * 59.99824 * 3 2 1 7 7 C 1.37876 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99989 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99805 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46990 * 179.97438 * 11 10 9 13 13 O 1.42907 * 109.46783 * 65.00187 * 12 11 10 14 14 C 1.42901 * 113.99724 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46813 * 179.97438 * 14 13 12 16 16 O 1.45204 * 109.47298 * 65.00390 * 15 14 13 17 17 C 1.34229 * 117.00037 * 180.02562 * 16 15 14 18 18 O 1.20823 * 120.00060 * 5.75193 * 17 16 15 19 19 C 1.50700 * 119.99616 * 185.75509 * 17 16 15 20 20 C 1.53343 * 108.46555 * 207.96341 * 19 17 16 21 21 C 1.54743 * 108.82333 * 58.21312 * 20 19 17 22 22 H 1.09000 * 114.19730 * 195.91541 * 21 20 19 23 23 C 1.54962 * 105.20029 * 322.13122 * 21 20 19 24 24 C 1.52449 * 111.72375 * 81.66826 * 23 21 20 25 25 C 1.54971 * 111.71986 * 0.02562 * 24 23 21 26 26 H 1.08996 * 114.36838 * 152.81934 * 25 24 23 27 27 C 1.52463 * 108.79171 * 331.71876 * 19 17 16 28 28 S 1.84389 * 101.86732 * 28.29182 * 25 24 23 29 29 H 0.97001 * 119.99731 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46950 * 60.00579 * 9 7 2 31 31 H 1.08989 * 109.47307 * 300.00142 * 9 7 2 32 32 H 1.08997 * 109.47065 * 60.00451 * 11 10 9 33 33 H 1.08994 * 109.47329 * 299.99709 * 11 10 9 34 34 H 1.09002 * 109.47466 * 305.00026 * 12 11 10 35 35 H 1.08992 * 109.47281 * 184.99609 * 12 11 10 36 36 H 1.08997 * 109.47460 * 59.99902 * 14 13 12 37 37 H 1.08996 * 109.46994 * 299.99571 * 14 13 12 38 38 H 1.08997 * 109.47448 * 304.99980 * 15 14 13 39 39 H 1.09008 * 109.47006 * 184.99635 * 15 14 13 40 40 H 1.08997 * 108.66571 * 90.01794 * 19 17 16 41 41 H 1.09001 * 110.37808 * 298.02579 * 20 19 17 42 42 H 1.08996 * 109.11669 * 177.65064 * 20 19 17 43 43 H 1.08806 * 89.64538 * 98.11229 * 18 17 16 44 44 H 1.09002 * 108.94598 * 202.19897 * 23 21 20 45 45 H 1.09004 * 109.04425 * 239.40184 * 24 23 21 46 46 H 1.09001 * 108.94787 * 120.52720 * 24 23 21 47 47 H 1.09008 * 109.50225 * 182.58871 * 27 19 17 48 48 H 1.08998 * 109.50274 * 62.48102 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 8 3.3874 -5.8892 1.2247 14 6 4.4298 -6.8613 1.3271 15 6 5.1507 -6.6968 2.6665 16 8 4.2337 -7.0013 3.7503 17 6 4.7135 -6.9036 5.0001 18 8 5.8276 -6.4753 5.1878 19 6 3.8625 -7.3281 6.1692 20 6 4.2862 -6.5156 7.3987 21 6 4.1186 -5.0098 7.0841 22 1 4.6403 -4.3481 7.7755 23 6 4.5476 -4.8539 5.6032 24 6 3.4217 -5.2306 4.6469 25 6 2.1452 -5.6692 5.4083 26 1 1.2165 -5.5024 4.8628 27 6 2.3946 -7.1460 5.7999 28 16 2.2995 -4.7234 6.9836 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8919 32 1 0.9453 -4.9830 -0.8869 33 1 0.9446 -4.9819 0.8930 34 1 3.3215 -5.7961 -0.8383 35 1 2.1820 -6.9375 -0.0854 36 1 5.1402 -6.7195 0.5127 37 1 4.0011 -7.8615 1.2652 38 1 5.5027 -5.6700 2.7660 39 1 6.0007 -7.3780 2.7076 40 1 4.0459 -8.3838 6.3690 41 1 5.3268 -6.7213 7.6494 42 1 3.6490 -6.7845 8.2411 43 1 5.4065 -5.4974 5.4121 44 1 4.8337 -3.8174 5.4248 45 1 3.7553 -6.0497 4.0097 46 1 3.1844 -4.3691 4.0227 47 1 1.7694 -7.4064 6.6541 48 1 2.1483 -7.7925 4.9577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893261565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:29 Heat of formation + Delta-G solvation = 41.641270 kcal Electronic energy + Delta-G solvation = -29976.247633 eV Core-core repulsion = 25939.262049 eV Total energy + Delta-G solvation = -4036.985584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.154 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.72337 -39.09457 -37.88122 -37.51466 -36.31577 -32.74912 -32.18752 -31.84437 -31.12179 -29.04769 -26.81903 -26.48357 -24.44462 -23.48434 -22.57286 -22.41784 -21.95207 -20.85657 -20.10485 -19.09007 -18.23506 -17.49212 -16.95111 -16.43083 -16.20958 -16.11459 -15.65170 -15.06141 -14.95976 -14.53219 -14.37355 -14.13400 -13.67174 -13.66103 -13.43508 -13.08636 -12.91174 -12.90719 -12.53377 -12.40919 -12.20353 -12.06960 -11.78980 -11.61169 -11.33615 -11.14736 -10.85508 -10.79907 -10.76659 -10.65436 -10.54264 -10.49364 -10.33646 -9.99315 -9.58524 -9.06496 -8.81854 -8.69473 -8.15467 -7.75512 -7.51874 -6.08257 -4.09419 1.09337 2.06333 2.19996 2.47697 3.31586 3.37978 3.44449 3.58643 3.99607 4.28900 4.36996 4.38772 4.48224 4.57722 4.76174 4.82088 4.83780 4.90682 4.99456 5.16839 5.20931 5.26484 5.28598 5.28729 5.34145 5.38402 5.42400 5.53260 5.60486 5.67385 5.70879 5.73791 5.80637 5.95337 5.97877 5.99004 6.09422 6.19843 6.52980 6.81225 7.04570 7.10682 7.23212 7.42198 7.45338 7.82544 8.17713 8.59485 9.03799 9.55357 11.03478 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.003304 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.970082 B = 8472.923736 C = 9782.697069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.389 6.389 11 C 0.062 3.938 12 C 0.069 3.931 13 O -0.367 6.367 14 C 0.057 3.943 15 C 0.034 3.966 16 O -0.293 6.293 17 C 0.461 3.539 18 O -0.417 6.417 19 C -0.079 4.079 20 C -0.103 4.103 21 C -0.021 4.021 22 H 0.114 0.886 23 C -0.322 4.322 24 C -0.388 4.388 25 C -0.007 4.007 26 H 0.120 0.880 27 C -0.111 4.111 28 S -0.348 6.348 29 H 0.263 0.737 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.244 0.756 44 H 0.048 0.952 45 H 0.295 0.705 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.223 -23.828 9.922 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.007 4.007 13 O -0.286 6.286 14 C -0.020 4.020 15 C -0.037 4.037 16 O -0.208 6.208 17 C 0.321 3.679 18 O -0.307 6.307 19 C -0.098 4.098 20 C -0.142 4.142 21 C -0.150 4.150 22 H 0.132 0.868 23 C -0.353 4.353 24 C -0.419 4.419 25 C -0.134 4.134 26 H 0.138 0.862 27 C -0.150 4.150 28 S -0.118 6.118 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.246 0.754 44 H 0.067 0.933 45 H 0.294 0.706 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.690 -22.794 10.857 27.044 hybrid contribution 0.259 1.448 -0.557 1.572 sum 9.949 -21.347 10.301 25.705 Atomic orbital electron populations 1.69970 1.06091 1.27012 1.50726 1.24939 0.94968 0.99409 0.95161 0.86304 0.80060 0.82677 0.77619 1.19482 1.20813 1.20817 1.21086 0.94082 0.89351 1.50572 0.91545 1.20201 0.88768 0.83650 0.95305 1.87907 1.35165 1.12620 1.95160 1.22253 0.93700 0.85711 0.99866 1.22600 0.94030 0.97407 0.86664 1.88112 1.46895 1.54809 1.38758 1.22538 0.91620 0.93414 0.94467 1.23586 0.91946 1.04365 0.83833 1.85527 1.40349 1.77842 1.17126 1.21997 0.85691 0.76259 0.83908 1.88227 1.23664 1.32771 1.86009 1.21297 0.95417 1.02259 0.90794 1.22134 1.02829 0.93357 0.95904 1.24539 0.91674 0.98001 1.00746 0.86776 1.29293 1.03522 1.10418 0.92113 1.28439 0.93418 1.16531 1.03516 1.24453 1.02437 0.94236 0.92316 0.86188 1.22176 0.93491 0.96535 1.02807 1.88071 1.12970 1.75501 1.35290 0.92735 0.97792 0.97698 0.92981 0.93640 0.92602 0.92576 0.90676 0.92082 0.88579 0.88451 0.86364 0.89491 0.89286 0.75376 0.93317 0.70577 0.89946 0.89640 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 22.62 29.54 -169.99 -5.02 17.60 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.51 -15.62 9.43 -34.44 -0.32 -15.94 16 8 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 9 C 0.19 5.51 5.69 36.01 0.20 5.72 16 10 O -0.39 -9.61 10.29 -40.08 -0.41 -10.02 16 11 C 0.06 1.15 6.32 37.16 0.23 1.38 16 12 C 0.07 0.96 6.32 37.16 0.23 1.19 16 13 O -0.37 -5.28 10.28 -48.79 -0.50 -5.78 16 14 C 0.06 0.51 6.33 37.16 0.24 0.74 16 15 C 0.03 0.29 5.42 37.16 0.20 0.49 16 16 O -0.29 -2.72 6.39 -42.02 -0.27 -2.99 16 17 C 0.46 4.28 4.04 36.01 0.15 4.43 16 18 O -0.42 -4.28 12.33 -18.75 -0.23 -4.51 16 19 C -0.08 -0.62 2.95 -91.87 -0.27 -0.90 16 20 C -0.10 -0.91 5.07 -25.64 -0.13 -1.04 16 21 C -0.02 -0.27 4.83 -24.78 -0.12 -0.39 16 22 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 23 C -0.32 -4.59 5.11 -25.98 -0.13 -4.72 16 24 C -0.39 -5.75 4.95 -25.97 -0.13 -5.88 16 25 C -0.01 -0.09 4.88 -24.74 -0.12 -0.21 16 26 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 27 C -0.11 -1.02 5.00 -26.06 -0.13 -1.15 16 28 S -0.35 -5.40 22.01 -107.50 -2.37 -7.77 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.01 0.15 8.14 -51.94 -0.42 -0.27 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.98 8.04 -51.93 -0.42 0.56 16 39 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 42 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 43 H 0.24 3.00 1.56 -105.75 -0.16 2.84 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.29 3.60 0.87 -105.65 -0.09 3.51 16 46 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.09 0.73 8.03 -51.92 -0.42 0.31 16 48 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -36.45 379.71 -10.33 -46.78 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.79 Total: 2.59 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.20 Total: -14.71 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.91 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.41 Total: -23.30 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.37 Total: -7.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.45 -10.33 -46.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893261565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.421 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds