Wall clock time and date at job start Wed Apr 1 2020 02:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99565 * 2 1 4 4 H 1.48504 * 109.46993 * 239.99936 * 3 2 1 5 5 H 1.48499 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47134 * 119.99814 * 3 2 1 7 7 C 1.37875 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99694 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.35052 * 125.93269 * 125.04593 * 10 9 7 12 12 C 1.35068 * 107.98783 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.07193 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47543 * 105.39290 * 13 12 11 15 15 C 1.46899 * 111.00389 * 184.74288 * 14 13 12 16 16 C 1.52999 * 109.47374 * 179.97438 * 15 14 13 17 17 C 1.53045 * 113.15093 * 275.37551 * 16 15 14 18 18 S 1.81422 * 89.88838 * 211.85103 * 17 16 15 19 19 C 1.53044 * 113.15181 * 175.00083 * 16 15 14 20 20 C 1.40864 * 107.85094 * 359.97438 * 12 11 10 21 21 C 1.48371 * 126.04234 * 180.02562 * 20 12 11 22 22 C 1.39776 * 120.90000 * 317.14880 * 21 20 12 23 23 C 1.37963 * 119.01661 * 179.75510 * 22 21 20 24 24 N 1.31934 * 120.88089 * 0.52947 * 23 22 21 25 25 C 1.31933 * 122.00286 * 359.74341 * 24 23 22 26 26 C 1.37956 * 120.88502 * 359.97256 * 25 24 23 27 27 N 1.31645 * 107.91929 * 0.02562 * 20 12 11 28 28 H 0.96991 * 120.00139 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47653 * 59.99835 * 9 7 2 30 30 H 1.09003 * 109.47294 * 299.99542 * 9 7 2 31 31 H 1.07998 * 126.00616 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.46667 * 225.38978 * 13 12 11 33 33 H 1.08999 * 109.47175 * 345.38468 * 13 12 11 34 34 H 1.00897 * 110.99994 * 308.69878 * 14 13 12 35 35 H 1.09000 * 109.47091 * 299.99641 * 15 14 13 36 36 H 1.08994 * 109.46920 * 60.00007 * 15 14 13 37 37 H 1.09004 * 112.49245 * 45.21286 * 16 15 14 38 38 H 1.09002 * 113.14869 * 327.10682 * 17 16 15 39 39 H 1.08999 * 113.14839 * 96.59638 * 17 16 15 40 40 H 1.08994 * 113.14553 * 263.40243 * 19 16 15 41 41 H 1.08994 * 113.14631 * 32.85063 * 19 16 15 42 42 H 1.07996 * 120.49089 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.55633 * 180.27081 * 23 22 21 44 44 H 1.08007 * 119.55525 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.49298 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2410 -4.6230 0.8958 12 6 3.2574 -5.4447 0.5548 13 6 3.6636 -6.7017 1.2799 14 7 3.2342 -7.8741 0.5059 15 6 3.5133 -9.1180 1.2358 16 6 3.0527 -10.3140 0.4001 17 6 1.5666 -10.6343 0.5761 18 16 1.9179 -12.3941 0.3094 19 6 3.4140 -11.6619 1.0286 20 6 3.8700 -4.9178 -0.5990 21 6 5.0297 -5.5027 -1.3162 22 6 6.1261 -6.0110 -0.6137 23 6 7.1814 -6.5508 -1.3197 24 7 7.1687 -6.5812 -2.6386 25 6 6.1563 -6.1073 -3.3393 26 6 5.0582 -5.5553 -2.7126 27 7 3.2318 -3.8145 -0.9286 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 1.5756 -4.7515 1.7366 32 1 4.7472 -6.7201 1.3959 33 1 3.1925 -6.7227 2.2626 34 1 2.2571 -7.8088 0.2629 35 1 4.5841 -9.1965 1.4238 36 1 2.9773 -9.1103 2.1848 37 1 3.3538 -10.2336 -0.6444 38 1 1.1974 -10.4183 1.5786 39 1 0.9395 -10.1999 -0.2025 40 1 4.3342 -12.0880 0.6290 41 1 3.4015 -11.6436 2.1183 42 1 6.1449 -5.9856 0.4658 43 1 8.0310 -6.9500 -0.7856 44 1 6.1876 -6.1520 -4.4179 45 1 4.2327 -5.1696 -3.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895421438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:56 Heat of formation + Delta-G solvation = 129.540048 kcal Electronic energy + Delta-G solvation = -26674.090893 eV Core-core repulsion = 23012.811309 eV Total energy + Delta-G solvation = -3661.279585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81349 -39.54441 -38.09618 -35.21617 -33.94460 -32.90884 -31.13853 -30.95715 -30.13759 -27.71913 -26.66908 -26.08858 -24.25242 -23.75896 -23.10404 -22.06029 -20.87316 -20.09095 -19.50027 -17.19010 -16.77500 -16.58136 -16.25287 -15.89558 -15.69898 -15.41527 -15.14100 -14.65523 -14.58305 -14.21756 -14.12429 -13.68260 -13.54810 -13.32298 -13.27691 -13.21466 -12.81808 -12.46159 -12.29354 -12.14091 -12.02781 -11.73266 -11.65975 -11.26945 -11.10732 -11.03517 -10.89908 -10.36670 -10.31293 -10.10523 -10.00157 -9.47456 -9.34638 -8.97449 -8.73413 -8.54290 -8.44569 -8.10700 -7.79910 -6.34709 -4.40531 1.27321 1.34813 1.47723 1.60210 2.54958 3.09667 3.19582 3.23427 3.25947 3.34913 3.87413 4.08370 4.19580 4.23515 4.48378 4.59338 4.71362 4.76158 4.90541 4.93197 4.98941 5.02008 5.06457 5.15793 5.22174 5.25714 5.28284 5.35164 5.38006 5.49561 5.57372 5.65190 5.82065 5.87689 5.91154 6.08840 6.13061 6.37944 6.50082 6.78317 6.85580 6.89527 6.94285 7.13880 7.32548 7.57104 7.73936 7.81551 8.12406 8.36875 8.67215 9.26063 10.74208 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.002712 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.583003 B =10322.845008 C =12300.885266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.256 3.744 10 N -0.317 5.317 11 C 0.056 3.944 12 C -0.248 4.248 13 C 0.145 3.855 14 N -0.681 5.681 15 C 0.071 3.929 16 C -0.087 4.087 17 C -0.081 4.081 18 S -0.304 6.304 19 C -0.077 4.077 20 C 0.085 3.915 21 C 0.069 3.931 22 C -0.149 4.149 23 C 0.094 3.906 24 N -0.494 5.494 25 C 0.095 3.905 26 C -0.150 4.150 27 N -0.258 5.258 28 H 0.269 0.731 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.342 0.658 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 -19.214 3.560 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.097 5.097 11 C -0.094 4.094 12 C -0.261 4.261 13 C 0.016 3.984 14 N -0.312 5.312 15 C -0.061 4.061 16 C -0.107 4.107 17 C -0.229 4.229 18 S -0.077 6.077 19 C -0.226 4.226 20 C -0.079 4.079 21 C 0.059 3.941 22 C -0.170 4.170 23 C -0.063 4.063 24 N -0.203 5.203 25 C -0.061 4.061 26 C -0.171 4.171 27 N -0.082 5.082 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.290 -19.601 1.441 20.963 hybrid contribution -0.902 1.661 2.229 2.923 sum 6.388 -17.940 3.670 19.394 Atomic orbital electron populations 1.69896 1.06066 1.27926 1.49319 1.24933 0.94988 0.99600 0.94369 0.86379 0.79415 0.81661 0.79054 1.19799 1.20950 1.19985 1.21173 0.93942 0.89259 1.52710 0.91314 1.19802 0.85636 0.81285 0.99392 1.49445 1.23129 1.19205 1.17876 1.22269 0.99837 0.90465 0.96839 1.19574 1.03040 1.01658 1.01778 1.20084 1.00022 0.85725 0.92610 1.60513 1.25451 1.00571 1.44647 1.21931 1.01405 0.88708 0.94041 1.22567 0.92510 0.93141 1.02435 1.24474 1.00961 0.91800 1.05676 1.89065 1.20254 1.16367 1.82024 1.24327 0.98857 0.96067 1.03309 1.20259 0.96908 0.94700 0.95991 1.18051 0.90694 0.93126 0.92197 1.22057 0.93869 0.99897 1.01191 1.22520 0.97354 0.96405 0.89979 1.67580 1.27457 1.16719 1.08588 1.22569 0.89076 0.94388 1.00080 1.22215 1.00212 1.00340 0.94359 1.77706 1.00621 1.16103 1.13815 0.92141 0.93485 0.92617 0.81750 0.90653 0.94976 0.84013 0.90230 0.94906 0.86269 0.87956 0.88338 0.88392 0.87847 0.84967 0.83133 0.83025 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.23 9.23 -34.44 -0.32 -14.54 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.26 6.11 6.26 -5.19 -0.03 6.07 16 10 N -0.32 -6.66 3.67 -62.58 -0.23 -6.89 16 11 C 0.06 0.94 11.32 -17.26 -0.20 0.74 16 12 C -0.25 -3.75 5.56 -104.76 -0.58 -4.33 16 13 C 0.14 1.60 5.70 -4.98 -0.03 1.57 16 14 N -0.68 -6.63 6.52 -115.06 -0.75 -7.38 16 15 C 0.07 0.51 5.46 -3.82 -0.02 0.49 16 16 C -0.09 -0.61 3.57 -90.57 -0.32 -0.93 16 17 C -0.08 -0.60 7.49 37.18 0.28 -0.32 16 18 S -0.30 -2.91 24.79 -107.50 -2.67 -5.58 16 19 C -0.08 -0.51 7.50 37.18 0.28 -0.23 16 20 C 0.08 1.49 6.72 -82.78 -0.56 0.93 16 21 C 0.07 1.06 5.77 -104.58 -0.60 0.46 16 22 C -0.15 -1.92 9.02 -39.11 -0.35 -2.27 16 23 C 0.09 1.14 11.17 -17.61 -0.20 0.94 16 24 N -0.49 -6.74 10.35 -13.35 -0.14 -6.88 16 25 C 0.10 1.25 11.17 -17.61 -0.20 1.05 16 26 C -0.15 -2.19 9.89 -39.11 -0.39 -2.57 16 27 N -0.26 -5.51 12.44 33.42 0.42 -5.10 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.08 0.80 5.82 -51.93 -0.30 0.49 16 33 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.34 3.43 8.66 -39.29 -0.34 3.09 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.21 7.89 -51.93 -0.41 -0.20 16 37 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.67 7.94 -51.93 -0.41 0.25 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.57 8.12 -51.93 -0.42 0.15 16 42 H 0.13 1.48 6.29 -52.49 -0.33 1.15 16 43 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -30.15 393.16 -11.47 -41.62 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.41 Total: 3.57 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -3.33 Total: -11.34 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.03 Total: -50.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.67 Total: -5.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.15 -11.47 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895421438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.160 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds