Wall clock time and date at job start Wed Apr 1 2020 02:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99565 * 2 1 4 4 H 1.48504 * 109.46993 * 239.99936 * 3 2 1 5 5 H 1.48499 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47134 * 119.99814 * 3 2 1 7 7 C 1.37875 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99694 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.35052 * 125.93269 * 125.04593 * 10 9 7 12 12 C 1.35068 * 107.98783 * 179.97438 * 11 10 9 13 13 C 1.50700 * 126.07193 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47543 * 105.39290 * 13 12 11 15 15 C 1.46899 * 111.00389 * 184.74288 * 14 13 12 16 16 C 1.52999 * 109.47374 * 179.97438 * 15 14 13 17 17 C 1.53045 * 113.15093 * 275.37551 * 16 15 14 18 18 S 1.81422 * 89.88838 * 211.85103 * 17 16 15 19 19 C 1.53044 * 113.15181 * 175.00083 * 16 15 14 20 20 C 1.40864 * 107.85094 * 359.97438 * 12 11 10 21 21 C 1.48371 * 126.04234 * 180.02562 * 20 12 11 22 22 C 1.39776 * 120.90000 * 317.14880 * 21 20 12 23 23 C 1.37963 * 119.01661 * 179.75510 * 22 21 20 24 24 N 1.31934 * 120.88089 * 0.52947 * 23 22 21 25 25 C 1.31933 * 122.00286 * 359.74341 * 24 23 22 26 26 C 1.37956 * 120.88502 * 359.97256 * 25 24 23 27 27 N 1.31645 * 107.91929 * 0.02562 * 20 12 11 28 28 H 0.96991 * 120.00139 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47653 * 59.99835 * 9 7 2 30 30 H 1.09003 * 109.47294 * 299.99542 * 9 7 2 31 31 H 1.07998 * 126.00616 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.46667 * 225.38978 * 13 12 11 33 33 H 1.08999 * 109.47175 * 345.38468 * 13 12 11 34 34 H 1.00897 * 110.99994 * 308.69878 * 14 13 12 35 35 H 1.09000 * 109.47091 * 299.99641 * 15 14 13 36 36 H 1.08994 * 109.46920 * 60.00007 * 15 14 13 37 37 H 1.09004 * 112.49245 * 45.21286 * 16 15 14 38 38 H 1.09002 * 113.14869 * 327.10682 * 17 16 15 39 39 H 1.08999 * 113.14839 * 96.59638 * 17 16 15 40 40 H 1.08994 * 113.14553 * 263.40243 * 19 16 15 41 41 H 1.08994 * 113.14631 * 32.85063 * 19 16 15 42 42 H 1.07996 * 120.49089 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.55633 * 180.27081 * 23 22 21 44 44 H 1.08007 * 119.55525 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.49298 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.2410 -4.6230 0.8958 12 6 3.2574 -5.4447 0.5548 13 6 3.6636 -6.7017 1.2799 14 7 3.2342 -7.8741 0.5059 15 6 3.5133 -9.1180 1.2358 16 6 3.0527 -10.3140 0.4001 17 6 1.5666 -10.6343 0.5761 18 16 1.9179 -12.3941 0.3094 19 6 3.4140 -11.6619 1.0286 20 6 3.8700 -4.9178 -0.5990 21 6 5.0297 -5.5027 -1.3162 22 6 6.1261 -6.0110 -0.6137 23 6 7.1814 -6.5508 -1.3197 24 7 7.1687 -6.5812 -2.6386 25 6 6.1563 -6.1073 -3.3393 26 6 5.0582 -5.5553 -2.7126 27 7 3.2318 -3.8145 -0.9286 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 1.5756 -4.7515 1.7366 32 1 4.7472 -6.7201 1.3959 33 1 3.1925 -6.7227 2.2626 34 1 2.2571 -7.8088 0.2629 35 1 4.5841 -9.1965 1.4238 36 1 2.9773 -9.1103 2.1848 37 1 3.3538 -10.2336 -0.6444 38 1 1.1974 -10.4183 1.5786 39 1 0.9395 -10.1999 -0.2025 40 1 4.3342 -12.0880 0.6290 41 1 3.4015 -11.6436 2.1183 42 1 6.1449 -5.9856 0.4658 43 1 8.0310 -6.9500 -0.7856 44 1 6.1876 -6.1520 -4.4179 45 1 4.2327 -5.1696 -3.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895421438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:56 Heat of formation + Delta-G solvation = 111.525156 kcal Electronic energy + Delta-G solvation = -26674.872078 eV Core-core repulsion = 23012.811309 eV Total energy + Delta-G solvation = -3662.060769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14501 -40.62346 -38.73863 -36.26692 -35.43548 -34.38929 -32.44177 -32.13567 -31.33272 -29.24715 -27.27435 -27.12158 -25.76710 -24.71611 -24.17819 -23.38902 -21.59990 -21.32167 -20.72961 -18.69095 -18.16017 -17.58417 -17.16323 -16.97613 -16.84381 -16.52998 -16.23863 -15.95703 -15.62451 -15.24551 -15.17382 -14.80238 -14.59791 -14.47556 -14.20150 -14.10129 -13.85169 -13.66679 -13.59034 -13.53858 -13.07189 -12.82150 -12.70802 -12.64488 -12.44457 -12.31713 -12.14319 -11.80506 -11.64844 -11.46540 -10.93444 -10.86778 -10.74211 -10.38541 -9.98197 -9.90676 -9.27382 -9.10754 -8.84332 -8.37286 -6.51018 0.14370 0.33664 0.89719 0.96931 1.19059 1.35582 1.37581 1.46047 1.80584 1.91795 2.31821 2.95134 3.03587 3.23018 3.50418 3.57112 3.69052 3.86059 3.92759 4.09460 4.16650 4.23359 4.26216 4.30292 4.35141 4.41541 4.44284 4.54351 4.61223 4.68401 4.70985 4.76007 4.87867 4.91598 4.98110 4.99675 5.07562 5.12642 5.22466 5.27172 5.48222 5.55569 5.73969 5.83441 5.85194 6.19180 6.29571 6.55704 6.60643 6.96977 7.11397 7.19381 8.70386 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.002712 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.583003 B =10322.845008 C =12300.885266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.273 3.727 10 N -0.347 5.347 11 C 0.051 3.949 12 C -0.233 4.233 13 C 0.151 3.849 14 N -0.691 5.691 15 C 0.078 3.922 16 C -0.077 4.077 17 C -0.065 4.065 18 S -0.382 6.382 19 C -0.053 4.053 20 C 0.089 3.911 21 C 0.046 3.954 22 C -0.142 4.142 23 C 0.100 3.900 24 N -0.506 5.506 25 C 0.097 3.903 26 C -0.166 4.166 27 N -0.317 5.317 28 H 0.273 0.727 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.195 0.805 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.339 0.661 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.152 0.848 43 H 0.188 0.812 44 H 0.175 0.825 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -20.305 5.373 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.098 4.098 12 C -0.245 4.245 13 C 0.022 3.978 14 N -0.322 5.322 15 C -0.053 4.053 16 C -0.097 4.097 17 C -0.213 4.213 18 S -0.156 6.156 19 C -0.202 4.202 20 C -0.074 4.074 21 C 0.036 3.964 22 C -0.163 4.163 23 C -0.056 4.056 24 N -0.216 5.216 25 C -0.059 4.059 26 C -0.187 4.187 27 N -0.141 5.141 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.212 0.788 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.170 0.830 43 H 0.205 0.795 44 H 0.192 0.808 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.409 -20.723 3.262 22.992 hybrid contribution -1.474 1.874 1.644 2.896 sum 7.935 -18.849 4.906 21.032 Atomic orbital electron populations 1.69972 1.07150 1.28863 1.49809 1.25694 0.95804 1.02619 0.93868 0.85469 0.78379 0.78118 0.78923 1.20166 1.19728 1.19244 1.21342 0.93263 0.91054 1.52963 0.93135 1.19276 0.85765 0.81671 0.97915 1.49096 1.23794 1.20043 1.19729 1.22911 1.00663 0.89359 0.96832 1.20025 1.01363 1.02518 1.00579 1.20104 1.00799 0.84075 0.92804 1.60451 1.25368 1.01107 1.45234 1.21935 1.02270 0.87006 0.94138 1.22409 0.92045 0.93521 1.01757 1.24525 1.01367 0.89109 1.06284 1.89412 1.23925 1.19311 1.82926 1.24358 0.97083 0.94530 1.04182 1.20788 0.96733 0.93523 0.96401 1.18214 0.91113 0.94488 0.92632 1.22247 0.92977 0.98966 1.02133 1.23108 0.97892 0.95074 0.89573 1.67679 1.27431 1.16947 1.09520 1.22878 0.88300 0.93499 1.01235 1.22233 1.00712 1.01342 0.94406 1.77620 1.02186 1.18728 1.15599 0.91796 0.96401 0.92452 0.78794 0.89546 0.92996 0.84341 0.89139 0.93256 0.87797 0.86436 0.88908 0.87636 0.85844 0.83023 0.79520 0.80791 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.30 13.29 21.45 0.28 -51.02 16 2 C 0.02 1.13 5.46 84.65 0.46 1.60 16 3 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.28 9.23 25.60 0.24 -30.05 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 9 C 0.27 13.60 6.26 85.63 0.54 14.14 16 10 N -0.35 -15.04 3.67 -351.91 -1.29 -16.33 16 11 C 0.05 1.66 11.32 83.47 0.94 2.61 16 12 C -0.23 -6.73 5.56 -19.95 -0.11 -6.84 16 13 C 0.15 2.83 5.70 85.56 0.49 3.32 16 14 N -0.69 -11.45 6.52 -517.95 -3.38 -14.83 16 15 C 0.08 0.81 5.46 86.30 0.47 1.29 16 16 C -0.08 -0.90 3.57 -10.76 -0.04 -0.94 16 17 C -0.06 -0.86 7.49 72.00 0.54 -0.32 16 18 S -0.38 -7.08 24.79 -56.49 -1.40 -8.48 16 19 C -0.05 -0.57 7.50 72.00 0.54 -0.03 16 20 C 0.09 3.14 6.72 42.51 0.29 3.43 16 21 C 0.05 1.36 5.77 -19.84 -0.11 1.25 16 22 C -0.14 -3.29 9.02 22.58 0.20 -3.08 16 23 C 0.10 2.09 11.17 84.61 0.95 3.03 16 24 N -0.51 -12.60 10.35 -196.13 -2.03 -14.63 16 25 C 0.10 2.42 11.17 84.61 0.95 3.36 16 26 C -0.17 -4.84 9.89 22.57 0.22 -4.61 16 27 N -0.32 -14.08 12.44 -48.17 -0.60 -14.68 16 28 H 0.27 14.31 8.31 -92.72 -0.77 13.54 16 29 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 2.78 8.07 -2.39 -0.02 2.76 16 31 H 0.20 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.09 1.46 5.82 -2.39 -0.01 1.45 16 33 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.34 6.06 8.66 -89.70 -0.78 5.29 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.40 7.89 -2.39 -0.02 0.39 16 37 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.12 1.21 7.94 -2.39 -0.02 1.19 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.88 8.12 -2.39 -0.02 0.86 16 42 H 0.15 2.84 6.29 -2.91 -0.02 2.82 16 43 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 45 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -68.40 393.16 0.40 -68.01 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.23 Total: 18.68 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 6.56 Total: -11.85 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -7.01 Total: -111.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.40 Total: -8.48 kcal Total: -68.40 0.40 -68.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895421438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.530 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds