Wall clock time and date at job start Wed Apr 1 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37970 * 120.07916 * 2 1 4 4 C 1.38334 * 120.14929 * 179.70475 * 3 2 1 5 5 C 1.38378 * 120.30270 * 0.55134 * 4 3 2 6 6 C 1.37938 * 120.14835 * 359.44560 * 5 4 3 7 7 C 1.39587 * 120.07141 * 179.97438 * 2 1 3 8 8 C 1.47646 * 120.15226 * 359.97438 * 7 2 1 9 9 N 1.29077 * 125.86701 * 0.04890 * 8 7 2 10 10 O 1.41390 * 112.87734 * 179.68029 * 9 8 7 11 11 C 1.44196 * 107.59325 * 17.49625 * 10 9 8 12 12 H 1.09000 * 110.97885 * 92.74948 * 11 10 9 13 13 C 1.50704 * 110.97160 * 216.48257 * 11 10 9 14 14 O 1.21283 * 119.99862 * 3.54290 * 13 11 10 15 15 N 1.34781 * 120.00149 * 183.54520 * 13 11 10 16 16 C 1.47418 * 125.64564 * 0.02562 * 15 13 11 17 17 C 1.54916 * 104.83110 * 204.09413 * 16 15 13 18 18 C 1.55156 * 101.57689 * 322.98928 * 17 16 15 19 19 O 1.42897 * 110.72350 * 276.96025 * 18 17 16 20 20 C 1.50708 * 110.71848 * 153.86776 * 18 17 16 21 21 H 1.07994 * 119.99645 * 241.45811 * 20 18 17 22 22 C 1.37876 * 120.00073 * 61.45024 * 20 18 17 23 23 N 1.31514 * 119.99899 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00081 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47065 * 90.00518 * 24 22 20 26 26 H 1.48499 * 109.47276 * 210.00034 * 24 22 20 27 27 H 1.48498 * 109.47198 * 330.00375 * 24 22 20 28 28 C 1.47016 * 125.64760 * 179.71787 * 15 13 11 29 29 C 1.51689 * 125.86536 * 179.73954 * 8 7 2 30 30 H 1.09003 * 109.47513 * 270.02408 * 1 2 3 31 31 H 1.09010 * 109.46967 * 30.02087 * 1 2 3 32 32 H 1.08995 * 109.47675 * 150.02228 * 1 2 3 33 33 H 1.07999 * 119.92289 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.84989 * 180.27976 * 4 3 2 35 35 H 1.08002 * 119.93022 * 179.72783 * 5 4 3 36 36 H 1.07999 * 120.07671 * 180.25547 * 6 5 4 37 37 H 1.08997 * 110.37436 * 322.92856 * 16 15 13 38 38 H 1.09003 * 110.37067 * 85.25610 * 16 15 13 39 39 H 1.08994 * 111.00572 * 81.06169 * 17 16 15 40 40 H 1.09001 * 111.00185 * 204.88220 * 17 16 15 41 41 H 0.96701 * 113.99893 * 298.54986 * 19 18 17 42 42 H 0.97003 * 120.00033 * 179.97438 * 23 22 20 43 43 H 1.09007 * 109.88449 * 298.39263 * 28 15 13 44 44 H 1.08997 * 109.88412 * 59.55488 * 28 15 13 45 45 H 1.08998 * 110.79149 * 282.86701 * 29 8 7 46 46 H 1.08994 * 110.79662 * 46.34657 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1956 0.0062 5 6 4.2815 0.0018 0.0009 6 6 3.6028 -1.1991 0.0009 7 6 2.2064 -1.2080 0.0005 8 6 1.4732 -2.4895 0.0017 9 7 0.1897 -2.6265 0.0014 10 8 -0.2187 -3.9801 -0.0046 11 6 0.9106 -4.7778 0.4049 12 1 0.8970 -4.9502 1.4811 13 6 0.9499 -6.0832 -0.3472 14 8 0.1332 -6.3077 -1.2153 15 7 1.8926 -7.0011 -0.0551 16 6 2.9409 -6.8594 0.9717 17 6 4.0748 -7.8107 0.5146 18 6 3.2672 -9.0012 -0.0666 19 8 2.8607 -9.8924 0.9738 20 6 4.0726 -9.7336 -1.1088 21 1 3.7158 -9.7884 -2.1267 22 6 5.2648 -10.3335 -0.7629 23 7 5.6989 -10.2671 0.4768 24 14 6.2633 -11.2407 -2.0549 25 1 7.2116 -10.2973 -2.7000 26 1 7.0226 -12.3422 -1.4103 27 1 5.3498 -11.8036 -3.0813 28 6 2.0418 -8.3122 -0.7033 29 6 2.0988 -3.8714 -0.0032 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 1.6585 2.1292 -0.0004 34 1 4.1182 2.1330 0.0107 35 1 5.3615 0.0102 0.0013 36 1 4.1500 -2.1301 0.0010 37 1 3.3001 -5.8309 1.0077 38 1 2.5604 -7.1635 1.9468 39 1 4.6904 -7.3438 -0.2542 40 1 4.6840 -8.1274 1.3612 41 1 3.5957 -10.2938 1.4573 42 1 6.5375 -10.6895 0.7202 43 1 1.1476 -8.9127 -0.5355 44 1 2.2069 -8.1805 -1.7726 45 1 2.4608 -4.1287 -0.9986 46 1 2.9023 -3.9350 0.7304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911527056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:32 Heat of formation + Delta-G solvation = -27.018725 kcal Electronic energy + Delta-G solvation = -29972.743966 eV Core-core repulsion = 25829.629861 eV Total energy + Delta-G solvation = -4143.114105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87491 -39.66826 -38.81840 -37.23676 -34.50550 -34.08832 -32.92964 -32.29544 -31.30917 -30.53222 -29.62147 -28.37467 -27.32396 -25.61761 -24.19481 -23.67735 -22.34827 -21.72229 -20.33626 -19.77405 -19.05883 -17.56611 -17.23468 -17.03698 -16.31853 -16.05415 -15.61466 -15.21664 -15.13737 -14.99315 -14.80233 -14.27919 -14.20350 -13.93171 -13.58056 -13.34513 -13.19642 -13.12145 -13.02596 -12.55027 -12.39663 -12.35072 -12.12035 -11.90016 -11.75973 -11.63140 -11.47413 -11.43737 -11.43352 -10.95856 -10.76433 -10.55032 -10.48477 -10.28569 -10.20155 -9.55352 -9.40227 -9.12259 -8.77460 -8.74538 -8.32522 -8.18688 -6.36505 -4.44068 0.39231 1.01833 1.95664 2.53511 2.79621 3.14929 3.23135 3.27456 3.39471 3.44043 3.76715 4.20126 4.22531 4.29220 4.52025 4.53450 4.59500 4.68910 4.82215 4.91955 4.95786 5.04195 5.16026 5.28433 5.37722 5.40333 5.45036 5.53782 5.56634 5.60841 5.63959 5.76435 5.87397 6.00956 6.05870 6.09874 6.13323 6.29085 6.34275 6.55451 6.57598 6.76688 6.82317 7.13478 7.18388 7.24346 7.65455 7.87532 7.93091 8.39522 8.58794 9.22001 9.31232 10.71035 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.002612 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.722649 B =10716.963143 C =11887.734351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.128 4.128 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.080 4.080 7 C -0.048 4.048 8 C 0.128 3.872 9 N -0.278 5.278 10 O -0.170 6.170 11 C 0.034 3.966 12 H 0.111 0.889 13 C 0.527 3.473 14 O -0.528 6.528 15 N -0.602 5.602 16 C 0.088 3.912 17 C -0.133 4.133 18 C 0.248 3.752 19 O -0.585 6.585 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.124 3.876 29 C -0.137 4.137 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 21.101 3.629 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 C -0.145 4.145 4 C -0.115 4.115 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.049 4.049 8 C -0.060 4.060 9 N -0.019 5.019 10 O -0.187 6.187 11 C -0.028 4.028 12 H 0.129 0.871 13 C 0.312 3.688 14 O -0.404 6.404 15 N -0.337 5.337 16 C -0.035 4.035 17 C -0.172 4.172 18 C 0.207 3.793 19 O -0.394 6.394 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.002 3.998 29 C -0.177 4.177 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.171 21.481 2.988 21.796 hybrid contribution 2.115 -1.157 -0.258 2.425 sum -0.055 20.324 2.730 20.507 Atomic orbital electron populations 1.21266 0.90138 1.04477 1.03294 1.20160 0.96822 0.91798 0.95607 1.21022 0.94283 0.97408 1.01836 1.21346 0.94231 0.98397 0.97539 1.21088 1.00337 0.91974 1.01357 1.21291 0.92303 0.99128 0.97276 1.17739 0.92532 0.88422 1.06186 1.24241 0.92190 0.94559 0.95046 1.78486 1.13237 0.97177 1.13043 1.91379 1.29874 1.10047 1.87430 1.23490 0.86949 0.92005 1.00400 0.87141 1.19477 0.81291 0.84107 0.83931 1.90728 1.38907 1.78488 1.32302 1.48559 1.29603 1.17597 1.37899 1.22668 0.89411 1.00001 0.91376 1.23308 0.95635 0.96363 1.01895 1.19465 0.87473 0.86341 0.85983 1.86142 1.38635 1.63546 1.51072 1.21494 1.05107 1.34876 0.95838 0.91718 1.24977 0.96990 0.95182 0.95820 1.69685 1.22317 1.44351 1.17152 0.86405 0.79847 0.79367 0.81328 1.20464 1.20981 1.19661 1.22137 0.99783 0.80977 0.96859 1.23002 0.99882 0.88810 1.05956 0.90625 0.91568 0.88098 0.85428 0.85584 0.85208 0.84981 0.92171 0.91555 0.91290 0.89139 0.76685 0.92161 0.91784 0.90718 0.87078 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 36.00 0.33 -0.97 16 2 C -0.04 -0.41 5.91 -104.22 -0.62 -1.03 16 3 C -0.13 -0.99 9.69 -39.64 -0.38 -1.38 16 4 C -0.10 -0.66 10.04 -39.49 -0.40 -1.06 16 5 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 6 C -0.08 -0.68 9.61 -39.17 -0.38 -1.06 16 7 C -0.05 -0.50 5.87 -105.03 -0.62 -1.11 16 8 C 0.13 1.58 7.05 -79.42 -0.56 1.02 16 9 N -0.28 -4.08 8.97 35.30 0.32 -3.77 16 10 O -0.17 -2.96 11.82 -30.21 -0.36 -3.31 16 11 C 0.03 0.51 3.51 -26.87 -0.09 0.42 16 12 H 0.11 1.43 8.12 -51.93 -0.42 1.01 16 13 C 0.53 9.95 7.16 -10.98 -0.08 9.87 16 14 O -0.53 -12.09 16.92 -13.28 -0.22 -12.31 16 15 N -0.60 -11.31 3.33 -170.52 -0.57 -11.87 16 16 C 0.09 1.43 6.64 -2.53 -0.02 1.42 16 17 C -0.13 -2.64 5.47 -24.58 -0.13 -2.77 16 18 C 0.25 5.67 0.85 -89.93 -0.08 5.59 16 19 O -0.58 -14.05 13.07 -35.23 -0.46 -14.51 16 20 C -0.53 -13.44 8.22 -34.44 -0.28 -13.72 16 21 H 0.06 1.65 7.57 -52.49 -0.40 1.25 16 22 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 23 N -0.90 -21.96 10.67 55.43 0.59 -21.37 16 24 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 C 0.12 2.69 6.23 -3.06 -0.02 2.67 16 29 C -0.14 -1.63 4.94 -26.38 -0.13 -1.76 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 32 H 0.10 1.20 5.19 -51.93 -0.27 0.93 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.92 7.36 -52.49 -0.39 0.54 16 37 H 0.06 0.76 5.76 -51.93 -0.30 0.47 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 40 H 0.09 1.86 7.54 -51.93 -0.39 1.47 16 41 H 0.38 9.16 7.46 45.56 0.34 9.50 16 42 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 43 H 0.06 1.46 8.07 -51.92 -0.42 1.04 16 44 H 0.07 1.65 7.66 -51.93 -0.40 1.26 16 45 H 0.11 1.38 7.91 -51.93 -0.41 0.97 16 46 H 0.11 1.01 6.78 -51.93 -0.35 0.66 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.10 375.62 -9.50 -39.60 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.49 Total: 10.77 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.94 Total: -3.49 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.34 Total: -37.01 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.04 Total: -30.14 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.10 -9.50 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.580 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds