Wall clock time and date at job start Wed Apr 1 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37970 * 120.07916 * 2 1 4 4 C 1.38334 * 120.14929 * 179.70475 * 3 2 1 5 5 C 1.38378 * 120.30270 * 0.55134 * 4 3 2 6 6 C 1.37938 * 120.14835 * 359.44560 * 5 4 3 7 7 C 1.39587 * 120.07141 * 179.97438 * 2 1 3 8 8 C 1.47646 * 120.15226 * 359.97438 * 7 2 1 9 9 N 1.29077 * 125.86701 * 0.04890 * 8 7 2 10 10 O 1.41390 * 112.87734 * 179.68029 * 9 8 7 11 11 C 1.44196 * 107.59325 * 17.49625 * 10 9 8 12 12 H 1.09000 * 110.97885 * 92.74948 * 11 10 9 13 13 C 1.50704 * 110.97160 * 216.48257 * 11 10 9 14 14 O 1.21283 * 119.99862 * 3.54290 * 13 11 10 15 15 N 1.34781 * 120.00149 * 183.54520 * 13 11 10 16 16 C 1.47418 * 125.64564 * 0.02562 * 15 13 11 17 17 C 1.54916 * 104.83110 * 204.09413 * 16 15 13 18 18 C 1.55156 * 101.57689 * 322.98928 * 17 16 15 19 19 O 1.42897 * 110.72350 * 276.96025 * 18 17 16 20 20 C 1.50708 * 110.71848 * 153.86776 * 18 17 16 21 21 H 1.07994 * 119.99645 * 241.45811 * 20 18 17 22 22 C 1.37876 * 120.00073 * 61.45024 * 20 18 17 23 23 N 1.31514 * 119.99899 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00081 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47065 * 90.00518 * 24 22 20 26 26 H 1.48499 * 109.47276 * 210.00034 * 24 22 20 27 27 H 1.48498 * 109.47198 * 330.00375 * 24 22 20 28 28 C 1.47016 * 125.64760 * 179.71787 * 15 13 11 29 29 C 1.51689 * 125.86536 * 179.73954 * 8 7 2 30 30 H 1.09003 * 109.47513 * 270.02408 * 1 2 3 31 31 H 1.09010 * 109.46967 * 30.02087 * 1 2 3 32 32 H 1.08995 * 109.47675 * 150.02228 * 1 2 3 33 33 H 1.07999 * 119.92289 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.84989 * 180.27976 * 4 3 2 35 35 H 1.08002 * 119.93022 * 179.72783 * 5 4 3 36 36 H 1.07999 * 120.07671 * 180.25547 * 6 5 4 37 37 H 1.08997 * 110.37436 * 322.92856 * 16 15 13 38 38 H 1.09003 * 110.37067 * 85.25610 * 16 15 13 39 39 H 1.08994 * 111.00572 * 81.06169 * 17 16 15 40 40 H 1.09001 * 111.00185 * 204.88220 * 17 16 15 41 41 H 0.96701 * 113.99893 * 298.54986 * 19 18 17 42 42 H 0.97003 * 120.00033 * 179.97438 * 23 22 20 43 43 H 1.09007 * 109.88449 * 298.39263 * 28 15 13 44 44 H 1.08997 * 109.88412 * 59.55488 * 28 15 13 45 45 H 1.08998 * 110.79149 * 282.86701 * 29 8 7 46 46 H 1.08994 * 110.79662 * 46.34657 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1956 0.0062 5 6 4.2815 0.0018 0.0009 6 6 3.6028 -1.1991 0.0009 7 6 2.2064 -1.2080 0.0005 8 6 1.4732 -2.4895 0.0017 9 7 0.1897 -2.6265 0.0014 10 8 -0.2187 -3.9801 -0.0046 11 6 0.9106 -4.7778 0.4049 12 1 0.8970 -4.9502 1.4811 13 6 0.9499 -6.0832 -0.3472 14 8 0.1332 -6.3077 -1.2153 15 7 1.8926 -7.0011 -0.0551 16 6 2.9409 -6.8594 0.9717 17 6 4.0748 -7.8107 0.5146 18 6 3.2672 -9.0012 -0.0666 19 8 2.8607 -9.8924 0.9738 20 6 4.0726 -9.7336 -1.1088 21 1 3.7158 -9.7884 -2.1267 22 6 5.2648 -10.3335 -0.7629 23 7 5.6989 -10.2671 0.4768 24 14 6.2633 -11.2407 -2.0549 25 1 7.2116 -10.2973 -2.7000 26 1 7.0226 -12.3422 -1.4103 27 1 5.3498 -11.8036 -3.0813 28 6 2.0418 -8.3122 -0.7033 29 6 2.0988 -3.8714 -0.0032 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 1.6585 2.1292 -0.0004 34 1 4.1182 2.1330 0.0107 35 1 5.3615 0.0102 0.0013 36 1 4.1500 -2.1301 0.0010 37 1 3.3001 -5.8309 1.0077 38 1 2.5604 -7.1635 1.9468 39 1 4.6904 -7.3438 -0.2542 40 1 4.6840 -8.1274 1.3612 41 1 3.5957 -10.2938 1.4573 42 1 6.5375 -10.6895 0.7202 43 1 1.1476 -8.9127 -0.5355 44 1 2.2069 -8.1805 -1.7726 45 1 2.4608 -4.1287 -0.9986 46 1 2.9023 -3.9350 0.7304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911527056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:32 Heat of formation + Delta-G solvation = -45.292370 kcal Electronic energy + Delta-G solvation = -29973.536371 eV Core-core repulsion = 25829.629861 eV Total energy + Delta-G solvation = -4143.906510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00626 -40.76922 -39.87781 -38.86587 -36.22194 -34.97158 -34.20790 -33.66972 -32.54981 -31.28125 -31.11786 -29.98769 -28.03363 -27.24700 -25.55346 -24.38996 -23.76732 -22.41104 -21.71726 -21.02141 -20.40744 -19.17525 -18.73325 -18.03462 -17.36161 -17.04010 -16.87318 -16.79865 -16.54642 -16.12089 -15.95956 -15.61983 -15.20388 -15.02200 -14.82253 -14.43588 -14.28457 -14.18207 -14.00747 -13.91436 -13.76188 -13.42404 -13.29992 -13.22289 -13.15766 -13.01417 -12.87619 -12.65883 -12.44452 -12.37190 -12.28834 -12.02251 -11.98585 -11.46604 -11.34824 -11.25146 -10.83464 -10.62376 -10.15007 -9.77124 -9.73034 -9.52746 -8.24818 -6.38517 -0.34212 0.44054 1.14964 1.23474 1.40215 1.42224 1.46178 1.54255 2.14850 2.39973 2.78126 2.83018 3.00772 3.19487 3.27776 3.34641 3.73456 3.83265 3.90056 3.92958 3.97828 4.15028 4.21748 4.23491 4.38179 4.41211 4.43578 4.51977 4.54974 4.56861 4.66966 4.76857 4.84119 4.87598 4.88125 5.07408 5.13383 5.15968 5.38616 5.44468 5.45991 5.54992 5.56491 5.61361 5.76662 6.00237 6.07150 6.14147 6.39362 6.64068 6.89275 7.31362 7.40944 8.81013 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.002612 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.722649 B =10716.963143 C =11887.734351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.133 4.133 4 C -0.089 4.089 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.075 4.075 8 C 0.147 3.853 9 N -0.303 5.303 10 O -0.215 6.215 11 C 0.038 3.962 12 H 0.137 0.863 13 C 0.525 3.475 14 O -0.578 6.578 15 N -0.600 5.600 16 C 0.095 3.905 17 C -0.122 4.122 18 C 0.236 3.764 19 O -0.594 6.594 20 C -0.563 4.563 21 H 0.048 0.952 22 C 0.042 3.958 23 N -0.902 5.902 24 Si 0.955 3.045 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.281 1.281 28 C 0.128 3.872 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.381 0.619 42 H 0.272 0.728 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 23.785 4.684 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.151 4.151 4 C -0.107 4.107 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.077 4.077 8 C -0.041 4.041 9 N -0.048 5.048 10 O -0.229 6.229 11 C -0.024 4.024 12 H 0.154 0.846 13 C 0.312 3.688 14 O -0.458 6.458 15 N -0.333 5.333 16 C -0.026 4.026 17 C -0.161 4.161 18 C 0.196 3.804 19 O -0.403 6.403 20 C -0.601 4.601 21 H 0.067 0.933 22 C -0.160 4.160 23 N -0.540 5.540 24 Si 0.782 3.218 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.207 1.207 28 C 0.005 3.995 29 C -0.171 4.171 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.231 0.769 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.517 24.157 4.071 24.504 hybrid contribution 1.353 -1.892 -0.617 2.406 sum 1.870 22.266 3.455 22.610 Atomic orbital electron populations 1.21204 0.90736 1.03959 1.03079 1.20309 0.96729 0.92584 0.96297 1.21288 0.95035 0.97369 1.01368 1.21759 0.93936 0.99674 0.95379 1.21462 1.01706 0.91505 1.00273 1.21547 0.91420 1.00599 0.96513 1.17885 0.93447 0.87590 1.08741 1.24640 0.91617 0.95572 0.92266 1.78632 1.14620 0.95062 1.16475 1.91355 1.31467 1.11866 1.88204 1.23530 0.88134 0.89988 1.00753 0.84575 1.20243 0.80090 0.85128 0.83300 1.90695 1.40795 1.79676 1.34657 1.48555 1.30283 1.16396 1.38057 1.22776 0.87290 1.01896 0.90666 1.23079 0.96135 0.95635 1.01254 1.19596 0.88069 0.87126 0.85643 1.86129 1.38782 1.64097 1.51272 1.21675 1.06141 1.36451 0.95815 0.93324 1.25506 0.97510 0.95572 0.97450 1.69727 1.22461 1.44153 1.17695 0.85600 0.78487 0.78507 0.79254 1.19708 1.20412 1.20652 1.21867 0.98559 0.82542 0.96482 1.23074 0.99563 0.87602 1.06910 0.90750 0.89974 0.90584 0.83548 0.82735 0.82683 0.83382 0.87423 0.90434 0.91751 0.89701 0.76902 0.91821 0.93897 0.92027 0.87433 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.18 71.23 0.65 -1.85 16 2 C -0.06 -1.02 5.91 -19.60 -0.12 -1.14 16 3 C -0.13 -1.67 9.69 22.23 0.22 -1.46 16 4 C -0.09 -0.86 10.04 22.33 0.22 -0.63 16 5 C -0.13 -1.35 10.03 22.23 0.22 -1.13 16 6 C -0.08 -1.10 9.61 22.54 0.22 -0.89 16 7 C -0.08 -1.42 5.87 -20.13 -0.12 -1.54 16 8 C 0.15 3.43 7.05 45.77 0.32 3.75 16 9 N -0.30 -8.96 8.97 -42.23 -0.38 -9.34 16 10 O -0.21 -7.65 11.82 -20.30 -0.24 -7.89 16 11 C 0.04 1.10 3.51 30.50 0.11 1.21 16 12 H 0.14 3.21 8.12 -2.39 -0.02 3.19 16 13 C 0.52 19.97 7.16 87.66 0.63 20.59 16 14 O -0.58 -27.65 16.92 14.97 0.25 -27.40 16 15 N -0.60 -22.32 3.33 -811.78 -2.70 -25.02 16 16 C 0.09 2.86 6.64 86.86 0.58 3.44 16 17 C -0.12 -4.70 5.47 31.99 0.17 -4.52 16 18 C 0.24 10.91 0.85 -10.35 -0.01 10.90 16 19 O -0.59 -28.88 13.07 -148.98 -1.95 -30.83 16 20 C -0.56 -28.76 8.22 25.60 0.21 -28.55 16 21 H 0.05 2.57 7.57 -2.91 -0.02 2.54 16 22 C 0.04 2.04 5.28 84.65 0.45 2.49 16 23 N -0.90 -43.56 10.67 21.45 0.23 -43.33 16 24 Si 0.96 40.03 29.54 68.60 2.03 42.06 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.13 5.75 6.23 86.73 0.54 6.29 16 29 C -0.13 -2.85 4.94 30.82 0.15 -2.69 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 32 H 0.08 1.86 5.19 -2.39 -0.01 1.85 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.15 1.44 7.36 -2.91 -0.02 1.42 16 37 H 0.11 2.25 5.76 -2.39 -0.01 2.23 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 40 H 0.08 3.37 7.54 -2.39 -0.02 3.35 16 41 H 0.38 18.37 7.46 -74.06 -0.55 17.81 16 42 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 43 H 0.04 2.06 8.07 -2.38 -0.02 2.04 16 44 H 0.06 2.88 7.66 -2.39 -0.02 2.86 16 45 H 0.11 2.47 7.91 -2.39 -0.02 2.45 16 46 H 0.15 2.00 6.78 -2.39 -0.02 1.99 16 Total: -1.00 -68.77 375.62 2.16 -66.61 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.47 Total: 30.85 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 4.45 Total: 4.29 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.85 Total: -77.70 kcal Atomic # 8 Polarization: -64.18 SS G_CDS: -1.93 Total: -66.11 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -68.77 2.16 -66.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.317 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds