Wall clock time and date at job start Wed Apr 1 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38944 * 119.66958 * 2 1 4 4 C 1.36438 * 120.61342 * 179.71645 * 3 2 1 5 5 C 1.40121 * 119.82770 * 0.26553 * 4 3 2 6 6 C 1.41557 * 133.35960 * 179.97438 * 5 4 3 7 7 C 1.35951 * 107.71726 * 179.97438 * 6 5 4 8 8 C 1.46890 * 125.43595 * 179.97438 * 7 6 5 9 9 O 1.21570 * 120.00699 * 359.97438 * 8 7 6 10 10 O 1.34849 * 119.99878 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00190 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47034 * 330.00456 * 11 10 8 13 13 C 1.53001 * 109.46929 * 90.00313 * 11 10 8 14 14 C 1.50704 * 109.47188 * 209.99839 * 11 10 8 15 15 O 1.21284 * 120.00123 * 0.02562 * 14 11 10 16 16 N 1.34776 * 119.99856 * 179.97438 * 14 11 10 17 17 C 1.46502 * 119.99850 * 0.02562 * 16 14 11 18 18 C 1.46502 * 119.99864 * 180.02562 * 16 14 11 19 19 C 1.50696 * 109.46941 * 90.00518 * 18 16 14 20 20 H 1.07998 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00053 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00299 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99939 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47167 * 89.99862 * 23 21 19 25 25 H 1.48505 * 109.47244 * 209.99373 * 23 21 19 26 26 H 1.48494 * 109.47325 * 329.99810 * 23 21 19 27 27 N 1.38185 * 109.12007 * 359.97438 * 7 6 5 28 28 H 0.97001 * 125.60838 * 180.02562 * 27 7 6 29 29 C 1.37468 * 108.78533 * 0.02562 * 27 7 6 30 30 C 1.37669 * 119.67691 * 180.25461 * 2 1 3 31 31 H 1.09001 * 109.46795 * 90.00290 * 1 2 3 32 32 H 1.09003 * 109.46978 * 209.99486 * 1 2 3 33 33 H 1.08999 * 109.47481 * 329.99952 * 1 2 3 34 34 H 1.08002 * 119.69633 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.08218 * 180.23414 * 4 3 2 36 36 H 1.08000 * 126.13780 * 359.96084 * 6 5 4 37 37 H 1.09003 * 109.46892 * 60.00212 * 13 11 10 38 38 H 1.08996 * 109.47324 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46987 * 300.00452 * 13 11 10 40 40 H 1.08998 * 109.47215 * 89.99739 * 17 16 14 41 41 H 1.09002 * 109.46816 * 209.99035 * 17 16 14 42 42 H 1.08990 * 109.47265 * 329.99401 * 17 16 14 43 43 H 1.09000 * 109.46951 * 210.00391 * 18 16 14 44 44 H 1.08997 * 109.46938 * 330.00409 * 18 16 14 45 45 H 0.97001 * 120.00106 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.09334 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2073 0.0000 4 6 3.5590 1.2298 0.0058 5 6 4.2758 0.0258 0.0062 6 6 5.6574 -0.2827 0.0109 7 6 5.7789 -1.6367 0.0093 8 6 7.0471 -2.3780 0.0124 9 8 8.1032 -1.7759 0.0163 10 8 7.0399 -3.7264 0.0109 11 6 8.3300 -4.3926 0.0136 12 1 9.0625 -3.7679 -0.4976 13 6 8.7793 -4.6282 1.4570 14 6 8.2137 -5.7157 -0.6986 15 8 7.1485 -6.0628 -1.1631 16 7 9.2937 -6.5127 -0.8202 17 6 10.5805 -6.0932 -0.2596 18 6 9.1808 -7.7986 -1.5130 19 6 9.4710 -7.6065 -2.9792 20 1 9.7156 -6.6248 -3.3571 21 6 9.4254 -8.6841 -3.8380 22 7 9.6792 -8.5165 -5.1175 23 14 9.0031 -10.3822 -3.1842 24 1 7.5334 -10.5858 -3.2480 25 1 9.6818 -11.4134 -4.0096 26 1 9.4581 -10.4975 -1.7754 27 7 4.5190 -2.2043 0.0043 28 1 4.3280 -3.1553 0.0026 29 6 3.5809 -1.1995 0.0021 30 6 2.1886 -1.1961 -0.0053 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6444 2.1366 0.0004 35 1 4.0848 2.1731 0.0096 36 1 6.4690 0.4298 0.0148 37 1 8.0468 -5.2529 1.9681 38 1 9.7476 -5.1287 1.4591 39 1 8.8633 -3.6713 1.9721 40 1 10.6618 -6.4470 0.7682 41 1 11.3908 -6.5152 -0.8542 42 1 10.6465 -5.0054 -0.2757 43 1 9.8969 -8.5033 -1.0901 44 1 8.1707 -8.1897 -1.3907 45 1 9.6468 -9.2746 -5.7218 46 1 1.6449 -2.1292 -0.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912672372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:45 Heat of formation + Delta-G solvation = -52.961540 kcal Electronic energy + Delta-G solvation = -29085.822000 eV Core-core repulsion = 24941.582931 eV Total energy + Delta-G solvation = -4144.239070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86025 -40.54051 -39.08548 -37.58817 -36.51054 -35.14502 -33.01884 -32.87277 -31.82308 -30.96398 -29.72929 -28.35808 -27.22410 -26.42201 -24.81287 -23.77144 -22.54495 -21.86480 -21.19813 -20.36673 -19.04389 -18.72102 -17.47655 -17.01557 -16.72587 -16.37113 -16.26840 -15.75088 -15.45620 -14.97514 -14.90168 -14.71812 -14.14909 -14.03689 -13.91330 -13.69385 -13.56707 -13.52808 -13.12846 -12.95930 -12.50960 -12.46747 -12.41960 -12.33549 -12.01921 -11.90164 -11.66482 -11.49541 -11.36373 -11.20168 -11.03609 -10.91630 -10.82861 -10.58283 -10.21214 -10.11328 -9.60869 -9.11747 -8.64469 -8.49872 -8.03694 -7.87066 -6.13796 -4.13738 0.38613 1.33871 1.67787 2.19967 2.73795 2.89460 3.09398 3.24933 3.30793 3.32544 3.57015 3.68816 4.34268 4.37026 4.49264 4.57635 4.65747 4.77592 4.84767 4.89596 4.97551 5.04119 5.09811 5.18918 5.27199 5.29718 5.38148 5.42156 5.51714 5.54439 5.55934 5.64860 5.70027 5.79748 5.87532 6.11076 6.14569 6.21090 6.21875 6.34778 6.38031 6.57717 6.78614 6.82749 7.14818 7.16138 7.51662 7.53569 8.02516 8.39050 8.73310 8.89373 9.45148 10.99418 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.002252 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.880125 B =12431.188969 C =13467.093820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.053 4.053 5 C -0.129 4.129 6 C -0.096 4.096 7 C 0.036 3.964 8 C 0.531 3.469 9 O -0.491 6.491 10 O -0.327 6.327 11 C 0.074 3.926 12 H 0.111 0.889 13 C -0.176 4.176 14 C 0.512 3.488 15 O -0.520 6.520 16 N -0.590 5.590 17 C 0.074 3.926 18 C 0.217 3.783 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 N -0.564 5.564 28 H 0.429 0.571 29 C 0.124 3.876 30 C -0.135 4.135 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.265 0.735 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 17.685 15.820 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.072 4.072 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.072 4.072 8 C 0.375 3.625 9 O -0.379 6.379 10 O -0.243 6.243 11 C 0.016 3.984 12 H 0.129 0.871 13 C -0.234 4.234 14 C 0.296 3.704 15 O -0.395 6.395 16 N -0.323 5.323 17 C -0.069 4.069 18 C 0.097 3.903 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.190 1.190 27 N -0.168 5.168 28 H 0.269 0.731 29 C 0.012 3.988 30 C -0.155 4.155 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.668 17.327 15.388 25.945 hybrid contribution 0.039 -1.413 0.038 1.414 sum -11.629 15.914 15.426 25.029 Atomic orbital electron populations 1.20811 0.90805 1.02906 1.02566 1.19643 0.95909 0.92182 0.97722 1.20534 0.93907 0.97438 1.04938 1.20381 0.93660 0.96154 0.97008 1.18135 0.92705 0.93077 1.09416 1.20915 0.95854 0.92442 1.03016 1.18979 0.82557 0.92060 1.13577 1.19993 0.88029 0.81245 0.73249 1.90891 1.31269 1.69617 1.46099 1.86645 1.34757 1.19465 1.83413 1.22629 0.83561 0.93484 0.98769 0.87096 1.22425 1.03690 1.03658 0.93579 1.19752 0.84993 0.84849 0.80785 1.90702 1.27622 1.73407 1.47819 1.47719 1.07982 1.21072 1.55532 1.21935 0.86938 0.99909 0.98142 1.19731 0.97920 0.79557 0.93058 1.21304 1.48299 0.97114 0.90420 0.90708 1.24863 0.94468 0.98984 0.94683 1.69898 1.48942 1.31476 1.02992 0.86839 0.79304 0.84199 0.79261 1.19876 1.20970 1.19035 1.42008 1.03578 1.08978 1.62191 0.73092 1.18334 0.90906 0.87570 1.01961 1.19939 0.89669 0.98620 1.07281 0.90894 0.91455 0.91289 0.85779 0.85527 0.82266 0.91016 0.88653 0.91060 0.92826 0.89981 0.91871 0.94755 0.94382 0.92464 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.99 36.01 0.36 -0.28 16 2 C -0.05 -0.44 5.88 -104.57 -0.61 -1.05 16 3 C -0.15 -1.20 9.61 -39.97 -0.38 -1.58 16 4 C -0.05 -0.48 10.06 -39.52 -0.40 -0.88 16 5 C -0.13 -1.45 6.16 -106.93 -0.66 -2.11 16 6 C -0.10 -1.13 10.53 -39.14 -0.41 -1.55 16 7 C 0.04 0.48 6.99 -82.32 -0.58 -0.09 16 8 C 0.53 8.04 7.92 34.23 0.27 8.31 16 9 O -0.49 -7.95 16.10 -19.32 -0.31 -8.26 16 10 O -0.33 -5.36 9.42 -47.59 -0.45 -5.81 16 11 C 0.07 1.19 2.18 -27.88 -0.06 1.12 16 12 H 0.11 1.74 6.42 -51.93 -0.33 1.40 16 13 C -0.18 -2.13 9.19 37.16 0.34 -1.79 16 14 C 0.51 10.53 7.15 -10.98 -0.08 10.45 16 15 O -0.52 -12.93 16.08 -14.10 -0.23 -13.16 16 16 N -0.59 -11.88 2.86 -182.96 -0.52 -12.40 16 17 C 0.07 1.08 8.80 59.85 0.53 1.61 16 18 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 19 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 20 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 23 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 N -0.56 -6.76 6.18 -7.37 -0.05 -6.80 16 28 H 0.43 4.68 8.96 -40.82 -0.37 4.32 16 29 C 0.12 1.41 7.25 -83.98 -0.61 0.80 16 30 C -0.13 -1.29 9.71 -39.42 -0.38 -1.67 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.99 4.53 -51.93 -0.24 0.75 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 41 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 43 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 44 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.91 388.01 -8.88 -44.79 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.14 Total: 2.96 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.14 Total: 2.95 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.21 Total: -45.93 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.99 Total: -27.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.91 -8.88 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912672372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.168 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds