Wall clock time and date at job start Wed Apr 1 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35735 * 120.33569 * 2 1 4 4 C 1.40827 * 119.72184 * 180.02562 * 3 2 1 5 5 C 1.34529 * 120.58653 * 359.97438 * 4 3 2 6 6 N 1.37441 * 120.74692 * 359.97438 * 5 4 3 7 7 C 1.35093 * 131.27683 * 180.34914 * 6 5 4 8 8 C 1.38131 * 108.76526 * 180.12359 * 7 6 5 9 9 C 1.47368 * 126.38424 * 179.82402 * 8 7 6 10 10 O 1.21517 * 119.99877 * 179.68722 * 9 8 7 11 11 O 1.34752 * 119.99590 * 359.69054 * 9 8 7 12 12 C 1.45206 * 116.99691 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46660 * 329.99548 * 12 11 9 14 14 C 1.52997 * 109.47147 * 89.99784 * 12 11 9 15 15 C 1.50697 * 109.47064 * 210.00184 * 12 11 9 16 16 O 1.21285 * 120.00040 * 354.99791 * 15 12 11 17 17 N 1.34778 * 119.99902 * 174.99933 * 15 12 11 18 18 C 1.46493 * 120.00087 * 359.97438 * 17 15 12 19 19 C 1.46505 * 119.99823 * 179.97438 * 17 15 12 20 20 C 1.50697 * 109.46900 * 89.99912 * 19 17 15 21 21 H 1.07995 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31522 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46851 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46742 * 120.00249 * 24 22 20 27 27 H 1.48495 * 109.47157 * 240.00302 * 24 22 20 28 28 C 1.41246 * 107.23620 * 359.56059 * 8 7 6 29 29 C 1.37956 * 119.80681 * 359.97438 * 6 5 4 30 30 H 1.08997 * 109.46460 * 270.01408 * 1 2 3 31 31 H 1.09001 * 109.47099 * 30.01560 * 1 2 3 32 32 H 1.09002 * 109.46901 * 150.01536 * 1 2 3 33 33 H 1.08004 * 120.13321 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.70314 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.62575 * 180.02562 * 5 4 3 36 36 H 1.08005 * 125.61893 * 359.97438 * 7 6 5 37 37 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.46832 * 60.00119 * 14 12 11 39 39 H 1.09004 * 109.47261 * 300.00100 * 14 12 11 40 40 H 1.09002 * 109.47115 * 89.99747 * 18 17 15 41 41 H 1.08998 * 109.47192 * 209.99907 * 18 17 15 42 42 H 1.08999 * 109.47064 * 329.99847 * 18 17 15 43 43 H 1.08997 * 109.46961 * 210.00478 * 19 17 15 44 44 H 1.09005 * 109.46984 * 329.99937 * 19 17 15 45 45 H 0.97003 * 119.99529 * 179.97438 * 23 22 20 46 46 H 1.07998 * 126.57321 * 180.25808 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2729 -0.0090 -0.0006 6 7 3.6007 -1.2078 0.0005 7 6 4.0504 -2.4817 0.0069 8 6 2.9650 -3.3360 0.0021 9 6 3.0119 -4.8090 0.0027 10 8 1.9794 -5.4497 0.0039 11 8 4.1998 -5.4451 0.0022 12 6 4.1700 -6.8969 0.0034 13 1 3.2733 -7.2414 0.5185 14 6 4.1582 -7.4080 -1.4386 15 6 5.3906 -7.4237 0.7132 16 8 6.2498 -6.6564 1.0927 17 7 5.5273 -8.7475 0.9262 18 6 4.4893 -9.6742 0.4683 19 6 6.7142 -9.2597 1.6157 20 6 6.4533 -9.3036 3.0993 21 1 5.4989 -8.9825 3.4895 22 6 7.4329 -9.7546 3.9584 23 7 8.5951 -10.1461 3.4831 24 14 7.1094 -9.8097 5.7974 25 1 5.7348 -9.3199 6.0730 26 1 7.2429 -11.2072 6.2817 27 1 8.0930 -8.9465 6.4991 28 6 1.8017 -2.5349 0.0026 29 6 2.2212 -1.2204 0.0021 30 1 -0.3632 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6603 2.1112 -0.0004 34 1 4.1460 2.0888 -0.0001 35 1 5.3529 -0.0024 -0.0006 36 1 5.0876 -2.7825 0.0123 37 1 4.1363 -8.4978 -1.4376 38 1 5.0549 -7.0634 -1.9535 39 1 3.2753 -7.0269 -1.9519 40 1 4.7147 -9.9992 -0.5474 41 1 4.4587 -10.5407 1.1288 42 1 3.5219 -9.1721 0.4827 43 1 6.9381 -10.2640 1.2562 44 1 7.5620 -8.6046 1.4150 45 1 9.2843 -10.4631 4.0876 46 1 0.7798 -2.8842 0.0035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924486487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:47 Heat of formation + Delta-G solvation = -60.170438 kcal Electronic energy + Delta-G solvation = -29221.934483 eV Core-core repulsion = 25077.382812 eV Total energy + Delta-G solvation = -4144.551671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.33900 -41.74737 -40.44599 -37.87211 -37.43846 -36.70499 -35.11262 -34.91075 -33.10499 -31.50680 -29.72941 -29.51113 -27.85438 -27.66855 -26.29539 -25.52550 -23.90965 -23.02042 -22.59208 -21.22340 -20.42682 -19.12015 -18.70571 -18.55325 -17.97503 -17.49591 -17.29582 -16.94193 -16.76379 -16.51755 -16.36780 -16.01389 -15.69379 -15.09420 -14.83600 -14.74901 -14.40331 -14.30398 -14.13913 -14.10389 -13.74476 -13.69061 -13.52446 -13.32437 -13.23269 -13.04073 -12.83200 -12.63588 -12.60271 -12.52986 -12.37846 -12.24089 -12.13795 -11.93779 -11.84342 -11.70211 -11.16892 -10.66545 -10.63145 -9.75245 -9.52848 -8.38393 -8.25260 -6.39482 -0.34315 0.26195 0.77690 1.20121 1.34998 1.37257 1.49049 1.60318 1.67137 2.11656 2.31755 2.44376 2.48396 3.04604 3.39328 3.40335 3.62500 3.71863 3.81769 3.84653 3.94600 4.05791 4.12131 4.25281 4.33760 4.42576 4.53742 4.61569 4.66998 4.73537 4.77483 4.79982 4.85225 4.88387 4.95022 5.08766 5.12167 5.17401 5.20491 5.26171 5.30142 5.43108 5.50325 5.54516 5.77010 5.82678 6.02344 6.17989 6.52905 6.66173 6.69237 7.18896 7.34499 8.82225 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.002309 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.342235 B =12121.950810 C =12938.524789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.062 4.062 3 C -0.131 4.131 4 C -0.117 4.117 5 C 0.010 3.990 6 N -0.340 5.340 7 C 0.017 3.983 8 C -0.187 4.187 9 C 0.538 3.462 10 O -0.530 6.530 11 O -0.338 6.338 12 C 0.079 3.921 13 H 0.114 0.886 14 C -0.161 4.161 15 C 0.501 3.499 16 O -0.577 6.577 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.050 0.950 22 C 0.010 3.990 23 N -0.925 5.925 24 Si 0.967 3.033 25 H -0.271 1.271 26 H -0.266 1.266 27 H -0.281 1.281 28 C -0.150 4.150 29 C 0.024 3.976 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.002 0.998 45 H 0.268 0.732 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 21.988 -11.938 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.106 4.106 6 N -0.002 5.002 7 C -0.118 4.118 8 C -0.193 4.193 9 C 0.384 3.616 10 O -0.421 6.421 11 O -0.254 6.254 12 C 0.021 3.979 13 H 0.131 0.869 14 C -0.218 4.218 15 C 0.288 3.712 16 O -0.457 6.457 17 N -0.331 5.331 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.068 0.932 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.195 1.195 26 H -0.191 1.191 27 H -0.206 1.206 28 C -0.173 4.173 29 C -0.081 4.081 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.184 0.816 34 H 0.201 0.799 35 H 0.205 0.795 36 H 0.210 0.790 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.077 0.923 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.490 22.234 -11.706 29.518 hybrid contribution 0.482 -0.676 1.143 1.413 sum -15.007 21.557 -10.563 28.311 Atomic orbital electron populations 1.20796 0.87927 1.04310 1.03586 1.19727 0.97842 0.89464 0.99251 1.21337 0.94158 0.98551 1.01013 1.21278 0.94971 0.97896 0.99468 1.22370 1.00134 0.82362 1.05780 1.41518 1.07471 1.05900 1.45336 1.22447 1.00139 0.80672 1.08525 1.18645 0.95418 0.88109 1.17111 1.20597 0.80970 0.88463 0.71544 1.90768 1.34922 1.68206 1.48180 1.86661 1.33331 1.21657 1.83757 1.22559 0.97282 0.77677 1.00399 0.86866 1.22286 1.04201 1.04267 0.91014 1.20587 0.87796 0.82902 0.79902 1.90652 1.44725 1.57264 1.53069 1.48047 1.23238 1.05615 1.56225 1.22201 0.90117 0.94083 1.00979 1.18858 0.82657 0.93534 0.91012 1.21707 1.00245 1.43481 0.92949 0.93180 1.25826 0.94547 0.94580 1.04020 1.70048 1.05432 1.44027 1.36974 0.85382 0.78187 0.78300 0.79028 1.19497 1.19114 1.20646 1.21100 0.98171 0.89326 1.08679 1.18971 0.82267 0.95369 1.11528 0.89922 0.88610 0.91360 0.81636 0.79871 0.79549 0.78976 0.87188 0.91255 0.89554 0.89577 0.90583 0.89590 0.94724 0.97982 0.92279 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.91 71.24 0.71 -0.41 16 2 C -0.06 -0.96 5.91 -19.66 -0.12 -1.07 16 3 C -0.13 -1.39 9.72 22.32 0.22 -1.17 16 4 C -0.12 -1.13 9.97 22.05 0.22 -0.91 16 5 C 0.01 0.14 10.89 82.96 0.90 1.05 16 6 N -0.34 -7.38 2.92 -345.02 -1.01 -8.39 16 7 C 0.02 0.45 11.41 84.17 0.96 1.41 16 8 C -0.19 -5.60 6.12 -20.16 -0.12 -5.72 16 9 C 0.54 18.49 7.93 70.23 0.56 19.05 16 10 O -0.53 -19.25 16.18 19.78 0.32 -18.93 16 11 O -0.34 -12.52 9.25 -50.25 -0.46 -12.99 16 12 C 0.08 2.76 2.17 29.85 0.06 2.83 16 13 H 0.11 3.78 6.15 -2.39 -0.01 3.76 16 14 C -0.16 -4.16 9.28 71.98 0.67 -3.49 16 15 C 0.50 22.59 7.10 87.66 0.62 23.22 16 16 O -0.58 -31.96 16.09 15.70 0.25 -31.70 16 17 N -0.60 -26.20 2.86 -851.14 -2.43 -28.63 16 18 C 0.07 2.05 8.92 127.77 1.14 3.19 16 19 C 0.26 14.18 5.16 85.63 0.44 14.62 16 20 C -0.55 -32.02 9.39 25.60 0.24 -31.78 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.01 0.56 5.46 84.65 0.46 1.02 16 23 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 24 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 C -0.15 -3.89 10.27 22.95 0.24 -3.65 16 29 C 0.02 0.52 6.60 38.90 0.26 0.78 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.07 0.78 7.70 -2.39 -0.02 0.76 16 33 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.11 2.33 5.12 -2.39 -0.01 2.32 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.09 2.03 7.02 -2.39 -0.02 2.01 16 41 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.09 2.16 6.08 -2.39 -0.01 2.14 16 43 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 44 H 0.00 0.13 7.42 -2.38 -0.02 0.11 16 45 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.16 3.78 7.93 -2.91 -0.02 3.75 16 Total: -1.00 -83.94 392.05 7.44 -76.50 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.00 Total: 13.30 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 7.45 Total: 18.94 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.15 Total: -92.82 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: 0.11 Total: -63.62 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -83.94 7.44 -76.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924486487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.333 kcal (2) G-P(sol) polarization free energy of solvation -83.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds