Wall clock time and date at job start Wed Apr 1 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00022 * 2 1 4 4 H 1.48492 * 109.47270 * 240.00150 * 3 2 1 5 5 H 1.48501 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47137 * 119.99847 * 3 2 1 7 7 C 1.38654 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99814 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99670 * 185.05215 * 9 7 2 11 11 C 1.38943 * 120.03804 * 354.47826 * 10 9 7 12 12 C 1.38126 * 120.07082 * 179.97438 * 11 10 9 13 13 C 1.38205 * 120.13998 * 359.78815 * 12 11 10 14 14 C 1.38921 * 120.06175 * 0.46959 * 13 12 11 15 15 N 1.39947 * 120.03177 * 179.79114 * 14 13 12 16 16 C 1.34770 * 119.99778 * 214.16546 * 15 14 13 17 17 O 1.21583 * 120.00141 * 5.16124 * 16 15 14 18 18 N 1.34776 * 120.00107 * 185.16488 * 16 15 14 19 19 C 1.46498 * 120.00215 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47352 * 179.97438 * 19 18 16 21 21 H 1.08996 * 109.25440 * 54.55815 * 20 19 18 22 22 C 1.50137 * 109.22696 * 295.09896 * 20 19 18 23 23 C 1.29929 * 124.13535 * 232.63344 * 22 20 19 24 24 C 1.51738 * 120.90975 * 0.61531 * 23 22 20 25 25 H 1.09000 * 113.84837 * 201.14779 * 24 23 22 26 26 C 1.55339 * 106.32154 * 326.48762 * 24 23 22 27 27 C 1.53417 * 109.26076 * 174.04822 * 20 19 18 28 28 H 1.09001 * 112.52021 * 291.34085 * 27 20 19 29 29 C 1.54273 * 108.97487 * 57.04199 * 27 20 19 30 30 O 1.43382 * 107.49662 * 92.15538 * 29 27 20 31 31 C 1.38738 * 120.03087 * 174.45324 * 10 9 7 32 32 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.96764 * 359.97438 * 11 10 9 34 34 H 1.08006 * 119.93128 * 180.02562 * 12 11 10 35 35 H 1.07997 * 119.97044 * 180.22866 * 13 12 11 36 36 H 0.96997 * 119.99686 * 34.15878 * 15 14 13 37 37 H 0.97002 * 119.99878 * 359.97438 * 18 16 15 38 38 H 1.09006 * 109.47329 * 60.00014 * 19 18 16 39 39 H 1.09003 * 109.47463 * 299.99939 * 19 18 16 40 40 H 1.08000 * 117.93547 * 52.61437 * 22 20 19 41 41 H 1.07995 * 119.54839 * 180.60660 * 23 22 20 42 42 H 1.09004 * 111.44626 * 311.14568 * 26 24 23 43 43 H 1.09002 * 111.44591 * 186.15087 * 26 24 23 44 44 H 1.09000 * 109.84631 * 211.64029 * 29 27 20 45 45 H 1.09001 * 109.84463 * 332.56488 * 29 27 20 46 46 H 1.07999 * 120.07036 * 0.02562 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1054 11 6 3.4579 -3.4385 0.0921 12 6 4.2068 -4.5941 0.2004 13 6 3.5789 -5.8187 0.3268 14 6 2.1916 -5.8918 0.3354 15 7 1.5564 -7.1327 0.4590 16 6 0.3894 -7.3585 -0.1761 17 8 -0.0643 -6.5199 -0.9305 18 7 -0.2748 -8.5138 0.0251 19 6 -1.5436 -8.7590 -0.6649 20 6 -2.0846 -10.1332 -0.2647 21 1 -2.1531 -10.1901 0.8216 22 6 -1.1465 -11.1966 -0.7580 23 6 -1.5124 -12.2154 -1.4766 24 6 -2.9609 -12.3972 -1.8907 25 1 -3.2173 -13.4221 -2.1588 26 6 -3.8217 -11.8354 -0.7260 27 6 -3.4811 -10.3234 -0.8707 28 1 -4.2251 -9.6672 -0.4190 29 6 -3.3909 -10.1547 -2.4015 30 8 -3.1761 -11.4548 -2.9666 31 6 1.4367 -4.7328 0.2278 32 1 -0.4850 0.8400 0.0004 33 1 3.9516 -2.4827 -0.0031 34 1 5.2855 -4.5401 0.1901 35 1 4.1672 -6.7201 0.4150 36 1 1.9562 -7.8302 1.0017 37 1 0.0874 -9.1830 0.6267 38 1 -1.3823 -8.7323 -1.7426 39 1 -2.2636 -7.9895 -0.3860 40 1 -0.1016 -11.1091 -0.4995 41 1 -0.7756 -12.9428 -1.7836 42 1 -3.4939 -12.2274 0.2369 43 1 -4.8831 -12.0223 -0.8889 44 1 -4.3216 -9.7346 -2.7830 45 1 -2.5581 -9.4980 -2.6530 46 1 0.3581 -4.7867 0.2384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926620136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:57 Heat of formation + Delta-G solvation = -38.340391 kcal Electronic energy + Delta-G solvation = -29072.574587 eV Core-core repulsion = 24928.969537 eV Total energy + Delta-G solvation = -4143.605049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39808 -40.22595 -38.69707 -36.83755 -35.98542 -34.10231 -33.97083 -32.29009 -32.18971 -30.57399 -29.37509 -28.41448 -27.05632 -25.26981 -24.81427 -22.97839 -22.10748 -21.36456 -21.08523 -20.50670 -18.92133 -18.46103 -18.20691 -17.46639 -17.06916 -16.35238 -15.83104 -15.31165 -15.02836 -14.97159 -14.84603 -14.47165 -14.38393 -14.19390 -14.05647 -13.73411 -13.57816 -13.47974 -13.23906 -12.86663 -12.61481 -12.50421 -12.39825 -11.90915 -11.69071 -11.58297 -11.48597 -11.16609 -11.08349 -10.95559 -10.75630 -10.71057 -10.46214 -9.97334 -9.86069 -9.72949 -9.55088 -9.22190 -9.09671 -8.77425 -7.61505 -7.13351 -6.37973 -3.97124 1.73355 2.12561 2.39582 2.67903 3.17173 3.17882 3.21177 3.38346 3.58253 3.89303 3.98875 4.05900 4.22012 4.36136 4.47175 4.59721 4.64828 4.67826 4.75502 4.89671 5.02899 5.16192 5.18454 5.30353 5.35776 5.38275 5.44942 5.48086 5.61575 5.65790 5.67881 5.80166 5.87368 6.12835 6.13443 6.26357 6.31512 6.38431 6.44453 6.55724 6.56992 6.87573 7.06374 7.10334 7.25992 7.39297 7.52689 7.86039 8.04975 8.07199 8.70256 9.06866 9.78902 10.80005 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.002035 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.302511 B =13757.752178 C =14873.317952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.247 4.247 12 C -0.058 4.058 13 C -0.238 4.238 14 C 0.196 3.804 15 N -0.682 5.682 16 C 0.698 3.302 17 O -0.559 6.559 18 N -0.747 5.747 19 C 0.142 3.858 20 C -0.066 4.066 21 H 0.093 0.907 22 C -0.136 4.136 23 C -0.175 4.175 24 C 0.104 3.896 25 H 0.120 0.880 26 C -0.147 4.147 27 C -0.116 4.116 28 H 0.108 0.892 29 C 0.044 3.956 30 O -0.373 6.373 31 C -0.187 4.187 32 H 0.270 0.730 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.400 0.600 37 H 0.393 0.607 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -25.748 2.195 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.114 3.886 11 C -0.266 4.266 12 C -0.077 4.077 13 C -0.259 4.259 14 C 0.102 3.898 15 N -0.330 5.330 16 C 0.398 3.602 17 O -0.433 6.433 18 N -0.404 5.404 19 C 0.018 3.982 20 C -0.085 4.085 21 H 0.111 0.889 22 C -0.155 4.155 23 C -0.193 4.193 24 C 0.047 3.953 25 H 0.138 0.862 26 C -0.184 4.184 27 C -0.135 4.135 28 H 0.126 0.874 29 C -0.033 4.033 30 O -0.292 6.292 31 C -0.208 4.208 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.235 0.765 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.558 -24.793 1.234 25.239 hybrid contribution 1.094 0.148 0.780 1.352 sum -3.464 -24.645 2.014 24.969 Atomic orbital electron populations 1.70048 1.05959 1.27690 1.45963 1.25300 0.95835 0.98818 0.96635 0.85779 0.78667 0.79807 0.79136 1.19507 1.20334 1.19534 1.21298 0.91787 0.80828 1.52863 0.89050 1.83994 1.34222 1.11334 1.78131 1.19111 0.90001 0.87784 0.91735 1.21161 0.93728 0.99074 1.12674 1.20486 0.98346 0.91703 0.97137 1.20226 0.91775 0.97720 1.16203 1.16922 0.90573 0.82725 0.99589 1.42482 1.22933 1.15228 1.52313 1.15946 0.80718 0.82419 0.81068 1.91039 1.68071 1.44980 1.39236 1.45058 1.24797 1.19291 1.51209 1.21327 0.84472 0.94955 0.97436 1.20491 0.93530 0.93300 1.01177 0.88938 1.22218 0.99579 0.95047 0.98634 1.23155 0.98055 0.99154 0.98958 1.22651 0.91490 0.94609 0.86520 0.86224 1.23481 1.00773 0.94609 0.99564 1.22873 0.96644 0.97641 0.96373 0.87425 1.23361 1.02075 0.86004 0.91833 1.88755 1.92557 1.17395 1.30520 1.20026 1.00307 0.88819 1.11664 0.92016 0.85478 0.87062 0.87480 0.76519 0.77293 0.90870 0.90762 0.87320 0.86786 0.89446 0.89935 0.90566 0.90540 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.07 13.67 55.48 0.76 -25.31 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.28 9.49 30.89 0.29 -10.98 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.17 -5.22 9.75 0.06 0.00 -5.22 16 10 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 11 C -0.25 -5.52 9.16 -39.36 -0.36 -5.88 16 12 C -0.06 -1.07 10.03 -39.63 -0.40 -1.47 16 13 C -0.24 -4.14 9.96 -39.34 -0.39 -4.54 16 14 C 0.20 3.74 6.26 -83.71 -0.52 3.21 16 15 N -0.68 -10.02 5.35 -14.24 -0.08 -10.10 16 16 C 0.70 11.07 8.29 -86.92 -0.72 10.35 16 17 O -0.56 -11.92 14.10 5.29 0.07 -11.84 16 18 N -0.75 -7.88 5.29 -65.22 -0.35 -8.23 16 19 C 0.14 1.42 4.57 -4.04 -0.02 1.40 16 20 C -0.07 -0.46 2.17 -91.83 -0.20 -0.65 16 21 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 22 C -0.14 -0.96 8.40 -36.00 -0.30 -1.26 16 23 C -0.17 -1.26 9.31 -35.21 -0.33 -1.59 16 24 C 0.10 0.75 4.99 -26.13 -0.13 0.62 16 25 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 26 C -0.15 -0.84 6.27 -24.07 -0.15 -0.99 16 27 C -0.12 -0.77 3.75 -88.32 -0.33 -1.11 16 28 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 29 C 0.04 0.38 6.79 37.82 0.26 0.64 16 30 O -0.37 -3.81 11.02 -35.23 -0.39 -4.20 16 31 C -0.19 -4.39 8.59 -39.21 -0.34 -4.73 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 34 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.40 4.06 8.84 -40.82 -0.36 3.70 16 37 H 0.39 2.77 7.91 -40.82 -0.32 2.45 16 38 H 0.07 0.86 6.11 -51.93 -0.32 0.54 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 0.70 7.53 -52.49 -0.40 0.30 16 41 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.09 0.42 7.92 -51.93 -0.41 0.01 16 43 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.76 5.45 -51.93 -0.28 0.47 16 46 H 0.13 3.26 6.49 -52.49 -0.34 2.92 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -36.51 372.66 -9.32 -45.83 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.94 Total: 9.44 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -4.00 Total: -11.94 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.34 Total: -43.64 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.31 Total: -21.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.51 -9.32 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926620136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.494 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds