Wall clock time and date at job start Wed Apr 1 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00022 * 2 1 4 4 H 1.48492 * 109.47270 * 240.00150 * 3 2 1 5 5 H 1.48501 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47137 * 119.99847 * 3 2 1 7 7 C 1.38654 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99814 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99670 * 185.05215 * 9 7 2 11 11 C 1.38943 * 120.03804 * 354.47826 * 10 9 7 12 12 C 1.38126 * 120.07082 * 179.97438 * 11 10 9 13 13 C 1.38205 * 120.13998 * 359.78815 * 12 11 10 14 14 C 1.38921 * 120.06175 * 0.46959 * 13 12 11 15 15 N 1.39947 * 120.03177 * 179.79114 * 14 13 12 16 16 C 1.34770 * 119.99778 * 214.16546 * 15 14 13 17 17 O 1.21583 * 120.00141 * 5.16124 * 16 15 14 18 18 N 1.34776 * 120.00107 * 185.16488 * 16 15 14 19 19 C 1.46498 * 120.00215 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47352 * 179.97438 * 19 18 16 21 21 H 1.08996 * 109.25440 * 54.55815 * 20 19 18 22 22 C 1.50137 * 109.22696 * 295.09896 * 20 19 18 23 23 C 1.29929 * 124.13535 * 232.63344 * 22 20 19 24 24 C 1.51738 * 120.90975 * 0.61531 * 23 22 20 25 25 H 1.09000 * 113.84837 * 201.14779 * 24 23 22 26 26 C 1.55339 * 106.32154 * 326.48762 * 24 23 22 27 27 C 1.53417 * 109.26076 * 174.04822 * 20 19 18 28 28 H 1.09001 * 112.52021 * 291.34085 * 27 20 19 29 29 C 1.54273 * 108.97487 * 57.04199 * 27 20 19 30 30 O 1.43382 * 107.49662 * 92.15538 * 29 27 20 31 31 C 1.38738 * 120.03087 * 174.45324 * 10 9 7 32 32 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.96764 * 359.97438 * 11 10 9 34 34 H 1.08006 * 119.93128 * 180.02562 * 12 11 10 35 35 H 1.07997 * 119.97044 * 180.22866 * 13 12 11 36 36 H 0.96997 * 119.99686 * 34.15878 * 15 14 13 37 37 H 0.97002 * 119.99878 * 359.97438 * 18 16 15 38 38 H 1.09006 * 109.47329 * 60.00014 * 19 18 16 39 39 H 1.09003 * 109.47463 * 299.99939 * 19 18 16 40 40 H 1.08000 * 117.93547 * 52.61437 * 22 20 19 41 41 H 1.07995 * 119.54839 * 180.60660 * 23 22 20 42 42 H 1.09004 * 111.44626 * 311.14568 * 26 24 23 43 43 H 1.09002 * 111.44591 * 186.15087 * 26 24 23 44 44 H 1.09000 * 109.84631 * 211.64029 * 29 27 20 45 45 H 1.09001 * 109.84463 * 332.56488 * 29 27 20 46 46 H 1.07999 * 120.07036 * 0.02562 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1054 11 6 3.4579 -3.4385 0.0921 12 6 4.2068 -4.5941 0.2004 13 6 3.5789 -5.8187 0.3268 14 6 2.1916 -5.8918 0.3354 15 7 1.5564 -7.1327 0.4590 16 6 0.3894 -7.3585 -0.1761 17 8 -0.0643 -6.5199 -0.9305 18 7 -0.2748 -8.5138 0.0251 19 6 -1.5436 -8.7590 -0.6649 20 6 -2.0846 -10.1332 -0.2647 21 1 -2.1531 -10.1901 0.8216 22 6 -1.1465 -11.1966 -0.7580 23 6 -1.5124 -12.2154 -1.4766 24 6 -2.9609 -12.3972 -1.8907 25 1 -3.2173 -13.4221 -2.1588 26 6 -3.8217 -11.8354 -0.7260 27 6 -3.4811 -10.3234 -0.8707 28 1 -4.2251 -9.6672 -0.4190 29 6 -3.3909 -10.1547 -2.4015 30 8 -3.1761 -11.4548 -2.9666 31 6 1.4367 -4.7328 0.2278 32 1 -0.4850 0.8400 0.0004 33 1 3.9516 -2.4827 -0.0031 34 1 5.2855 -4.5401 0.1901 35 1 4.1672 -6.7201 0.4150 36 1 1.9562 -7.8302 1.0017 37 1 0.0874 -9.1830 0.6267 38 1 -1.3823 -8.7323 -1.7426 39 1 -2.2636 -7.9895 -0.3860 40 1 -0.1016 -11.1091 -0.4995 41 1 -0.7756 -12.9428 -1.7836 42 1 -3.4939 -12.2274 0.2369 43 1 -4.8831 -12.0223 -0.8889 44 1 -4.3216 -9.7346 -2.7830 45 1 -2.5581 -9.4980 -2.6530 46 1 0.3581 -4.7867 0.2384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926620136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:56 Heat of formation + Delta-G solvation = -65.538600 kcal Electronic energy + Delta-G solvation = -29073.753989 eV Core-core repulsion = 24928.969537 eV Total energy + Delta-G solvation = -4144.784452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08651 -41.54086 -40.42112 -38.40980 -37.00958 -35.56116 -34.92328 -34.24719 -32.91629 -31.41108 -30.94921 -29.86403 -27.89235 -27.29241 -25.60758 -24.08732 -23.27905 -22.89049 -22.00461 -21.58712 -19.98207 -19.71618 -19.47130 -18.92022 -18.06871 -17.54645 -16.93713 -16.74367 -16.61123 -16.09846 -15.98119 -15.73181 -15.65017 -15.48269 -15.24952 -15.05675 -14.76793 -14.42070 -14.26594 -14.14307 -13.83442 -13.58118 -13.35985 -13.19375 -13.09610 -12.92221 -12.63735 -12.46835 -12.33855 -12.16106 -12.15939 -11.71220 -11.53325 -11.36837 -11.33045 -10.99567 -10.75195 -10.51411 -10.18626 -10.10808 -9.29399 -8.83200 -8.45460 -6.15047 0.47949 0.72651 1.17807 1.34829 1.46540 1.51386 1.53154 2.04234 2.19233 2.85799 3.00643 3.06639 3.20020 3.33344 3.53779 3.61382 3.75922 3.92140 3.99027 4.05072 4.15500 4.19998 4.27752 4.37956 4.43770 4.47575 4.55389 4.67266 4.72208 4.75444 4.80014 4.84236 4.89749 5.02818 5.05488 5.09873 5.12624 5.13910 5.34119 5.38986 5.48170 5.59328 5.65433 5.75901 5.84355 5.95640 5.97147 6.04652 6.23246 6.97768 6.98508 7.47401 7.81323 8.78371 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.002035 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.302511 B =13757.752178 C =14873.317952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.028 4.028 3 Si 1.024 2.976 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.107 0.893 9 O -0.236 6.236 10 C 0.127 3.873 11 C -0.257 4.257 12 C -0.047 4.047 13 C -0.206 4.206 14 C 0.204 3.796 15 N -0.665 5.665 16 C 0.693 3.307 17 O -0.619 6.619 18 N -0.719 5.719 19 C 0.142 3.858 20 C -0.054 4.054 21 H 0.115 0.885 22 C -0.142 4.142 23 C -0.181 4.181 24 C 0.093 3.907 25 H 0.136 0.864 26 C -0.137 4.137 27 C -0.115 4.115 28 H 0.119 0.881 29 C 0.038 3.962 30 O -0.399 6.399 31 C -0.213 4.213 32 H 0.272 0.728 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.428 0.572 37 H 0.416 0.584 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -28.807 3.642 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.842 3.158 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.124 0.876 9 O -0.142 6.142 10 C 0.076 3.924 11 C -0.277 4.277 12 C -0.066 4.066 13 C -0.227 4.227 14 C 0.109 3.891 15 N -0.315 5.315 16 C 0.393 3.607 17 O -0.498 6.498 18 N -0.376 5.376 19 C 0.018 3.982 20 C -0.072 4.072 21 H 0.133 0.867 22 C -0.160 4.160 23 C -0.199 4.199 24 C 0.037 3.963 25 H 0.154 0.846 26 C -0.174 4.174 27 C -0.134 4.134 28 H 0.137 0.863 29 C -0.039 4.039 30 O -0.320 6.320 31 C -0.235 4.235 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.267 0.733 37 H 0.254 0.746 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.555 -28.002 2.733 28.178 hybrid contribution 0.245 0.683 0.308 0.789 sum -1.310 -27.319 3.041 27.519 Atomic orbital electron populations 1.70224 1.08288 1.28836 1.49034 1.26729 0.96882 1.03053 0.95851 0.84582 0.77289 0.73783 0.80096 1.18040 1.19792 1.17719 1.21884 0.92715 0.81266 1.53123 0.87581 1.83960 1.36226 1.12724 1.81331 1.19662 0.91774 0.87324 0.93651 1.21316 0.92401 1.00839 1.13125 1.21037 1.00575 0.90377 0.94568 1.20856 0.90857 0.99482 1.11458 1.17057 0.91496 0.82843 0.97717 1.42234 1.22567 1.14365 1.52299 1.16233 0.80890 0.82998 0.80565 1.91025 1.69486 1.47357 1.41965 1.44817 1.24248 1.17937 1.50613 1.21368 0.83763 0.96755 0.96311 1.20427 0.93414 0.90957 1.02428 0.86675 1.22318 1.00019 0.94887 0.98800 1.23303 0.98345 0.99567 0.98670 1.22958 0.91942 0.94921 0.86451 0.84648 1.23471 1.01086 0.93175 0.99690 1.22917 0.96877 0.98963 0.94677 0.86267 1.23380 1.01340 0.85524 0.93614 1.88727 1.92681 1.18175 1.32376 1.20042 0.99199 0.90313 1.13941 0.91908 0.85852 0.82166 0.81827 0.73258 0.74619 0.92892 0.92135 0.86365 0.86016 0.87797 0.89110 0.90427 0.92469 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.82 13.67 21.61 0.30 -59.53 16 2 C -0.03 -1.69 5.49 84.83 0.47 -1.22 16 3 Si 1.02 44.29 29.55 68.60 2.03 46.32 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.41 -25.24 9.49 67.92 0.64 -24.60 16 8 H 0.11 5.82 5.20 -2.91 -0.02 5.80 16 9 O -0.24 -15.33 9.75 -22.69 -0.22 -15.55 16 10 C 0.13 6.87 6.64 22.56 0.15 7.02 16 11 C -0.26 -11.47 9.16 22.41 0.21 -11.27 16 12 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 13 C -0.21 -6.16 9.96 22.43 0.22 -5.94 16 14 C 0.20 7.46 6.26 38.13 0.24 7.70 16 15 N -0.66 -17.96 5.35 -317.24 -1.70 -19.65 16 16 C 0.69 21.70 8.29 179.06 1.49 23.19 16 17 O -0.62 -27.76 14.10 -3.98 -0.06 -27.82 16 18 N -0.72 -14.15 5.29 -478.53 -2.53 -16.68 16 19 C 0.14 2.81 4.57 86.38 0.39 3.20 16 20 C -0.05 -0.64 2.17 -11.58 -0.03 -0.66 16 21 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 22 C -0.14 -1.68 8.40 26.58 0.22 -1.45 16 23 C -0.18 -2.25 9.31 27.08 0.25 -2.00 16 24 C 0.09 1.19 4.99 30.98 0.15 1.35 16 25 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 26 C -0.14 -1.24 6.27 32.32 0.20 -1.04 16 27 C -0.12 -1.39 3.75 -9.30 -0.03 -1.43 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 C 0.04 0.68 6.79 72.41 0.49 1.17 16 30 O -0.40 -8.07 11.02 -148.98 -1.64 -9.71 16 31 C -0.21 -10.52 8.59 22.51 0.19 -10.32 16 32 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 33 H 0.12 5.49 5.63 -2.91 -0.02 5.48 16 34 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.43 6.75 8.84 -92.71 -0.82 5.93 16 37 H 0.42 4.50 7.91 -92.71 -0.73 3.77 16 38 H 0.05 1.30 6.11 -2.38 -0.01 1.29 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.12 1.14 7.53 -2.91 -0.02 1.12 16 41 H 0.12 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.10 0.64 7.92 -2.38 -0.02 0.62 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.22 5.45 -2.39 -0.01 1.21 16 46 H 0.09 5.23 6.49 -2.91 -0.02 5.21 16 Total: -1.00 -90.63 372.66 1.15 -89.47 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.51 Total: 30.81 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.49 Total: -17.65 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.93 Total: -95.86 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.92 Total: -53.08 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -90.63 1.15 -89.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926620136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.933 kcal (2) G-P(sol) polarization free energy of solvation -90.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds