Wall clock time and date at job start Wed Apr 1 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48500 * 109.47195 * 239.99799 * 3 2 1 5 5 H 1.48495 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46861 * 119.99962 * 3 2 1 7 7 C 1.37870 * 120.00549 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00533 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99684 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47141 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.35978 * 116.99680 * 179.97438 * 11 10 9 13 13 C 1.38798 * 120.49875 * 0.24572 * 12 11 10 14 14 C 1.38782 * 118.44796 * 180.29254 * 13 12 11 15 15 C 1.38088 * 119.34957 * 359.72423 * 14 13 12 16 16 N 1.31952 * 120.95779 * 0.02562 * 15 14 13 17 17 C 1.32267 * 121.69354 * 359.97438 * 16 15 14 18 18 N 1.39571 * 119.73100 * 180.02562 * 17 16 15 19 19 C 1.34782 * 119.99761 * 359.97438 * 18 17 16 20 20 O 1.21280 * 119.99994 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99743 * 180.02562 * 19 18 17 22 22 H 1.08999 * 110.67119 * 61.76799 * 21 19 18 23 23 C 1.54997 * 110.74854 * 298.54414 * 21 19 18 24 24 C 1.55825 * 102.79360 * 241.68080 * 23 21 19 25 25 H 1.08999 * 115.38854 * 158.83296 * 24 23 21 26 26 O 1.46540 * 101.91548 * 32.64647 * 24 23 21 27 27 C 1.48392 * 100.75307 * 305.02309 * 26 24 23 28 28 H 1.08996 * 116.97439 * 181.74184 * 27 26 24 29 29 C 1.55824 * 100.40965 * 307.37640 * 27 26 24 30 30 H 1.09002 * 118.19666 * 171.40948 * 29 27 26 31 31 C 1.53007 * 117.23608 * 328.10071 * 29 27 26 32 32 C 1.52999 * 60.86555 * 90.74491 * 31 29 27 33 33 H 1.09000 * 120.23127 * 113.05745 * 32 31 29 34 34 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 35 35 H 1.08999 * 109.47137 * 59.99782 * 9 7 2 36 36 H 1.08997 * 109.47175 * 300.00199 * 9 7 2 37 37 H 1.09000 * 109.46936 * 59.99728 * 10 9 7 38 38 H 1.09003 * 109.46757 * 299.99755 * 10 9 7 39 39 H 1.08005 * 120.77818 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.32077 * 179.75663 * 14 13 12 41 41 H 1.08009 * 119.51913 * 179.97438 * 15 14 13 42 42 H 0.96996 * 120.00791 * 179.97438 * 18 17 16 43 43 H 1.09000 * 110.74709 * 123.36052 * 23 21 19 44 44 H 1.08997 * 110.90786 * 0.08214 * 23 21 19 45 45 H 1.09003 * 117.40831 * 198.47830 * 31 29 27 46 46 H 1.08996 * 117.40923 * 343.00767 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5309 -4.8995 0.0001 12 6 2.2716 -6.0399 -0.0004 13 6 3.6582 -5.9793 0.0037 14 6 4.3720 -7.1694 -0.0032 15 6 3.6879 -8.3689 -0.0080 16 7 2.3687 -8.3979 -0.0067 17 6 1.6492 -7.2881 -0.0002 18 7 0.2557 -7.3666 0.0014 19 6 -0.3514 -8.5699 -0.0041 20 8 0.3131 -9.5844 -0.0100 21 6 -1.8561 -8.6546 -0.0028 22 1 -2.2683 -8.1900 -0.8985 23 6 -2.4418 -8.0005 1.2745 24 6 -3.1719 -9.1900 1.9675 25 1 -3.3512 -9.0697 3.0359 26 8 -2.3264 -10.3256 1.5894 27 6 -2.3250 -10.1898 0.1117 28 1 -1.7784 -10.9446 -0.4536 29 6 -3.8569 -10.1260 -0.1666 30 1 -4.1872 -9.8809 -1.1760 31 6 -4.7728 -10.9117 0.7741 32 6 -4.4407 -9.4548 1.1027 33 1 -5.2200 -8.6934 1.0694 34 1 -0.4850 0.8400 -0.0004 35 1 0.6241 -2.5567 -0.8903 36 1 0.6248 -2.5571 0.8896 37 1 2.8721 -3.6042 0.8894 38 1 2.8720 -3.6042 -0.8906 39 1 4.1698 -5.0281 0.0069 40 1 5.4520 -7.1575 -0.0042 41 1 4.2407 -9.2968 -0.0138 42 1 -0.2758 -6.5553 0.0066 43 1 -3.1484 -7.2121 1.0152 44 1 -1.6476 -7.6111 1.9113 45 1 -5.7822 -11.1299 0.4252 46 1 -4.3140 -11.6828 1.3929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931624229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:32 Heat of formation + Delta-G solvation = -39.442434 kcal Electronic energy + Delta-G solvation = -29587.106343 eV Core-core repulsion = 25443.453505 eV Total energy + Delta-G solvation = -4143.652837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48121 -41.82161 -40.13837 -39.06220 -36.00416 -35.44558 -35.20375 -33.38625 -32.85286 -32.12669 -30.49743 -30.11441 -27.17388 -26.06043 -24.74053 -24.07767 -23.53638 -22.60127 -21.37922 -21.28549 -20.73113 -19.62370 -18.90144 -18.38054 -18.03007 -17.82861 -17.26979 -17.09485 -16.82455 -16.48200 -16.16502 -15.90328 -15.51297 -15.23219 -15.17888 -14.80325 -14.40699 -14.31065 -14.12222 -13.69245 -13.61609 -13.37247 -13.30938 -12.99823 -12.81993 -12.72727 -12.46565 -12.43660 -12.28405 -12.12171 -11.86323 -11.71081 -11.64117 -11.45053 -11.35328 -11.07072 -10.98388 -10.65389 -10.59887 -10.42446 -10.15519 -8.87789 -8.25341 -6.37803 0.06970 0.27211 1.42799 1.45164 1.52962 1.61044 1.76013 2.10089 2.44345 2.60978 2.65306 2.85658 3.09909 3.18958 3.36228 3.54845 3.59327 3.74144 3.80008 3.84261 3.89309 4.05480 4.06538 4.14612 4.20911 4.28830 4.32607 4.36048 4.45396 4.59506 4.62377 4.74236 4.82159 4.86445 4.88541 4.95050 4.96564 5.09340 5.12503 5.25254 5.30823 5.31374 5.49444 5.50693 5.52086 5.73322 6.08078 6.17387 6.32001 6.76651 6.91798 7.24476 7.32182 8.86994 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.002616 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.261214 B =10699.497324 C =12956.942376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.328 6.328 12 C 0.042 3.958 13 C -0.149 4.149 14 C -0.145 4.145 15 C 0.072 3.928 16 N -0.475 5.475 17 C 0.309 3.691 18 N -0.651 5.651 19 C 0.512 3.488 20 O -0.513 6.513 21 C -0.126 4.126 22 H 0.137 0.863 23 C -0.132 4.132 24 C 0.084 3.916 25 H 0.144 0.856 26 O -0.403 6.403 27 C 0.116 3.884 28 H 0.135 0.865 29 C -0.201 4.201 30 H 0.143 0.857 31 C -0.134 4.134 32 C -0.186 4.186 33 H 0.146 0.854 34 H 0.266 0.734 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.427 0.573 43 H 0.117 0.883 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -18.145 0.100 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.006 4.006 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.009 4.009 13 C -0.176 4.176 14 C -0.165 4.165 15 C -0.085 4.085 16 N -0.190 5.190 17 C 0.077 3.923 18 N -0.299 5.299 19 C 0.299 3.701 20 O -0.385 6.385 21 C -0.148 4.148 22 H 0.155 0.845 23 C -0.170 4.170 24 C 0.027 3.973 25 H 0.161 0.839 26 O -0.323 6.323 27 C 0.058 3.942 28 H 0.153 0.847 29 C -0.219 4.219 30 H 0.160 0.840 31 C -0.171 4.171 32 C -0.204 4.204 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.175 0.825 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.266 0.734 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.654 -19.716 0.240 20.260 hybrid contribution 0.592 2.404 -0.116 2.479 sum -4.062 -17.312 0.125 17.783 Atomic orbital electron populations 1.70084 1.07842 1.28189 1.50607 1.25933 0.95760 1.03349 0.94306 0.85442 0.78216 0.77731 0.79330 1.18985 1.20991 1.19015 1.21367 0.93848 0.91087 1.52061 0.91177 1.18932 0.94478 0.90875 0.96322 1.22963 0.95667 0.79631 1.00842 1.86022 1.36604 1.12994 1.88511 1.19746 0.92147 0.86232 1.02776 1.21915 0.91476 1.01830 1.02342 1.22279 1.03077 0.91045 1.00143 1.23054 0.88123 0.99792 0.97497 1.67674 1.09510 1.27295 1.14538 1.18052 0.85725 0.87039 1.01437 1.43602 1.03420 1.10864 1.72053 1.21219 0.91241 0.82350 0.75246 1.90751 1.66957 1.35036 1.45771 1.23875 0.89035 0.99192 1.02650 0.84518 1.23173 1.00703 0.98765 0.94344 1.24402 0.88049 0.84638 1.00206 0.83900 1.90307 1.70939 1.49497 1.21545 1.25383 0.94374 0.93243 0.81171 0.84714 1.24311 0.92167 1.08247 0.97155 0.83973 1.22891 1.00083 0.93528 1.00583 1.24405 0.99877 0.98158 0.97932 0.83590 0.92501 0.97933 0.97954 0.91880 0.91822 0.82499 0.80674 0.79799 0.73417 0.86477 0.91440 0.85829 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.44 0.28 -53.42 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.55 -28.89 9.11 25.60 0.23 -28.66 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.08 3.24 4.70 71.98 0.34 3.57 16 11 O -0.33 -12.15 9.39 -93.31 -0.88 -13.03 16 12 C 0.04 1.38 6.72 22.70 0.15 1.54 16 13 C -0.15 -4.10 9.14 22.53 0.21 -3.89 16 14 C -0.14 -3.24 10.10 22.36 0.23 -3.02 16 15 C 0.07 1.87 11.17 84.64 0.95 2.82 16 16 N -0.47 -16.14 7.87 -192.58 -1.52 -17.66 16 17 C 0.31 10.51 7.45 132.99 0.99 11.50 16 18 N -0.65 -19.78 5.31 -308.02 -1.63 -21.41 16 19 C 0.51 15.26 6.99 87.66 0.61 15.88 16 20 O -0.51 -19.07 14.23 -3.03 -0.04 -19.11 16 21 C -0.13 -2.64 2.94 -7.92 -0.02 -2.66 16 22 H 0.14 2.15 8.06 -2.39 -0.02 2.13 16 23 C -0.13 -2.42 6.11 32.25 0.20 -2.22 16 24 C 0.08 1.55 5.62 32.55 0.18 1.73 16 25 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 26 O -0.40 -10.50 10.77 -148.98 -1.60 -12.11 16 27 C 0.12 2.52 4.97 34.50 0.17 2.69 16 28 H 0.14 3.15 7.92 -2.39 -0.02 3.13 16 29 C -0.20 -3.04 6.53 -9.13 -0.06 -3.10 16 30 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 31 C -0.13 -1.90 9.80 30.60 0.30 -1.60 16 32 C -0.19 -2.58 6.62 -9.13 -0.06 -2.64 16 33 H 0.15 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.06 2.30 7.69 -2.39 -0.02 2.28 16 38 H 0.06 2.31 7.71 -2.39 -0.02 2.29 16 39 H 0.16 3.86 6.44 -2.91 -0.02 3.84 16 40 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.43 11.66 8.04 -92.71 -0.75 10.91 16 43 H 0.12 1.55 8.03 -2.39 -0.02 1.53 16 44 H 0.07 1.46 7.74 -2.39 -0.02 1.44 16 45 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 1.48 7.65 -2.39 -0.02 1.46 16 Total: -1.00 -73.70 380.77 1.94 -71.76 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.27 Total: 26.95 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.03 Total: -5.59 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -2.87 Total: -92.50 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -2.52 Total: -44.24 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -73.70 1.94 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.319 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds