Wall clock time and date at job start Wed Apr 1 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48506 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47347 * 300.00051 * 3 2 1 6 6 H 1.48495 * 109.47337 * 60.00376 * 3 2 1 7 7 C 1.38806 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64721 * 0.05293 * 9 7 2 11 11 C 1.54906 * 104.83306 * 204.08470 * 10 9 7 12 12 H 1.09000 * 111.03572 * 204.90267 * 11 10 9 13 13 O 1.42893 * 111.00899 * 81.06286 * 11 10 9 14 14 C 1.55162 * 101.58070 * 322.98671 * 11 10 9 15 15 H 1.08996 * 110.71908 * 277.14164 * 14 11 10 16 16 C 1.52996 * 110.71755 * 153.86511 * 14 11 10 17 17 N 1.46500 * 109.47062 * 175.00111 * 16 14 11 18 18 C 1.34774 * 120.00403 * 180.02562 * 17 16 14 19 19 O 1.21623 * 119.99682 * 354.88397 * 18 17 16 20 20 C 1.47161 * 120.00242 * 174.89402 * 18 17 16 21 21 C 1.38401 * 126.88542 * 5.10822 * 20 18 17 22 22 C 1.39667 * 105.36262 * 180.02562 * 21 20 18 23 23 N 1.30864 * 107.85949 * 0.02562 * 22 21 20 24 24 N 1.28442 * 110.92820 * 359.71580 * 23 22 21 25 25 C 1.46505 * 125.19345 * 180.28195 * 24 23 22 26 26 C 1.52998 * 109.46628 * 274.92032 * 25 24 23 27 27 F 1.39899 * 109.47291 * 174.99620 * 26 25 24 28 28 F 1.39898 * 109.47446 * 294.99756 * 26 25 24 29 29 C 1.47026 * 125.65159 * 179.97438 * 9 7 2 30 30 H 0.97003 * 119.99966 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36701 * 85.24110 * 10 9 7 32 32 H 1.09006 * 110.36406 * 322.92236 * 10 9 7 33 33 H 0.96704 * 114.00202 * 67.80198 * 13 11 10 34 34 H 1.08999 * 109.47545 * 294.99994 * 16 14 11 35 35 H 1.09005 * 109.47460 * 55.00508 * 16 14 11 36 36 H 0.97009 * 119.99957 * 0.02562 * 17 16 14 37 37 H 1.08006 * 127.32175 * 0.03274 * 21 20 18 38 38 H 1.08001 * 126.07514 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46730 * 34.91775 * 25 24 23 40 40 H 1.08997 * 109.47400 * 154.92416 * 25 24 23 41 41 H 1.09002 * 109.47608 * 55.00183 * 26 25 24 42 42 H 1.09004 * 109.87792 * 59.57242 * 29 9 7 43 43 H 1.08999 * 109.88120 * 298.40613 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0011 11 6 -0.4018 -3.9325 0.6102 12 1 -1.3590 -4.3332 0.2768 13 8 -0.3372 -3.8883 2.0370 14 6 0.7784 -4.7525 0.0252 15 1 0.5462 -5.0976 -0.9823 16 6 1.1228 -5.9316 0.9371 17 7 2.1567 -6.7536 0.3032 18 6 2.6194 -7.8546 0.9278 19 8 2.2477 -8.1149 2.0562 20 6 3.5744 -8.7416 0.2446 21 6 4.1645 -8.5335 -0.9899 22 6 4.9836 -9.6450 -1.2005 23 7 4.8685 -10.4312 -0.1607 24 7 4.0595 -9.9331 0.7037 25 6 3.7078 -10.5505 1.9849 26 6 2.5647 -11.5455 1.7747 27 9 2.3051 -12.2177 2.9738 28 9 1.4165 -10.8576 1.3679 29 6 1.9318 -3.7275 -0.0016 30 1 -0.4850 0.8401 0.0004 31 1 -0.5269 -2.4864 -1.0196 32 1 -0.5995 -1.7590 0.6146 33 1 -1.0545 -3.3866 2.4479 34 1 1.4915 -5.5570 1.8920 35 1 0.2304 -6.5350 1.1036 36 1 2.5082 -6.5053 -0.5662 37 1 4.0220 -7.6907 -1.6502 38 1 5.6016 -9.8244 -2.0679 39 1 4.5756 -11.0736 2.3865 40 1 3.3926 -9.7779 2.6862 41 1 2.8471 -12.2667 1.0078 42 1 2.5583 -3.8515 0.8818 43 1 2.5282 -3.8638 -0.9037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958070121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:44 Heat of formation + Delta-G solvation = -98.753841 kcal Electronic energy + Delta-G solvation = -30448.046453 eV Core-core repulsion = 25779.884902 eV Total energy + Delta-G solvation = -4668.161552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.13356 -48.16145 -43.61296 -40.72086 -39.67534 -36.36389 -36.24529 -35.07893 -34.00148 -32.39399 -31.03554 -30.05389 -29.37582 -27.29644 -25.66943 -24.87275 -23.84742 -22.51787 -22.06565 -21.44857 -20.87417 -19.43783 -19.08138 -18.61225 -18.49832 -18.03428 -17.80597 -17.20505 -16.81181 -16.63642 -16.31048 -15.97065 -15.71830 -15.52987 -15.43626 -15.06233 -14.88784 -14.64822 -14.52435 -14.43914 -14.40951 -13.95523 -13.87686 -13.64886 -13.36092 -13.16302 -13.03312 -12.66180 -12.38924 -12.30195 -12.02072 -11.93238 -11.85170 -11.81101 -11.64563 -11.14429 -10.79959 -10.64825 -10.44798 -10.19301 -10.03188 -8.83570 -7.77599 -5.19445 0.09450 1.07522 1.47011 1.47907 1.56945 1.57644 2.03939 2.10523 2.49815 2.60915 3.06096 3.22856 3.29132 3.35827 3.50007 3.61144 3.62642 3.71570 3.91478 3.97710 4.01464 4.08893 4.20173 4.33884 4.45446 4.54437 4.62946 4.66606 4.83910 4.86237 4.93198 5.02933 5.26643 5.36855 5.41909 5.42230 5.53164 5.59985 5.79513 6.30581 6.36404 6.91821 6.97320 7.04692 7.12892 7.79951 8.42276 9.24653 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.002409 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.697841 B =11618.769469 C =12523.010191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.093 3.907 12 H 0.089 0.911 13 O -0.570 6.570 14 C -0.090 4.090 15 H 0.118 0.882 16 C 0.159 3.841 17 N -0.699 5.699 18 C 0.585 3.415 19 O -0.570 6.570 20 C -0.050 4.050 21 C -0.171 4.171 22 C 0.011 3.989 23 N -0.291 5.291 24 N -0.274 5.274 25 C 0.065 3.935 26 C 0.257 3.743 27 F -0.198 7.198 28 F -0.213 7.213 29 C 0.141 3.859 30 H 0.246 0.754 31 H 0.003 0.997 32 H 0.078 0.922 33 H 0.388 0.612 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.192 0.808 38 H 0.225 0.775 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.013 0.987 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.136 -23.414 -2.727 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.001 3.999 11 C 0.032 3.968 12 H 0.107 0.893 13 O -0.377 6.377 14 C -0.109 4.109 15 H 0.136 0.864 16 C 0.036 3.964 17 N -0.350 5.350 18 C 0.371 3.629 19 O -0.450 6.450 20 C -0.177 4.177 21 C -0.199 4.199 22 C -0.166 4.166 23 N -0.122 5.122 24 N -0.061 5.061 25 C -0.056 4.056 26 C 0.203 3.797 27 F -0.179 7.179 28 F -0.194 7.194 29 C 0.016 3.984 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.096 0.904 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.254 0.746 37 H 0.209 0.791 38 H 0.242 0.758 39 H 0.173 0.827 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.031 0.969 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.669 -24.814 -1.433 25.735 hybrid contribution -0.511 2.502 -0.372 2.581 sum 6.158 -22.312 -1.805 23.217 Atomic orbital electron populations 1.69999 1.05978 1.24836 1.58976 1.25541 0.96669 1.00691 1.02960 0.85031 0.78085 0.79668 0.76685 1.19373 1.21805 1.22094 1.19444 0.90908 0.83878 1.41985 0.90506 1.44655 1.02600 1.00800 1.86624 1.22444 0.84761 0.95270 0.97402 1.23117 0.97335 0.95224 0.81121 0.89289 1.86376 1.55474 1.76812 1.19072 1.22461 0.95197 0.93317 0.99958 0.86387 1.20957 0.90128 0.89936 0.95415 1.45614 1.40916 1.24960 1.23543 1.17148 0.80006 0.80903 0.84840 1.90764 1.60593 1.74293 1.19382 1.21458 1.05457 0.92371 0.98461 1.22782 0.99547 1.02585 0.95000 1.24286 1.02142 0.91848 0.98339 1.73216 1.11258 1.26344 1.01401 1.45320 1.31156 1.14270 1.15395 1.23226 1.00360 0.99609 0.82453 1.22336 0.82158 0.90732 0.84505 1.93008 1.94700 1.80855 1.49353 1.93026 1.54096 1.81655 1.90632 1.21470 0.94570 0.84582 0.97740 0.94382 0.97953 0.90387 0.76309 0.92776 0.90926 0.74635 0.79079 0.75832 0.82658 0.85740 0.83942 0.96880 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.80 10.09 21.65 0.22 -54.58 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.23 -12.86 10.27 84.03 0.86 -11.99 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -30.84 3.39 -691.99 -2.35 -33.19 16 10 C 0.13 5.82 5.62 86.85 0.49 6.31 16 11 C 0.09 3.17 4.17 31.99 0.13 3.30 16 12 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 13 O -0.57 -20.17 12.33 -148.98 -1.84 -22.01 16 14 C -0.09 -2.73 2.89 -9.61 -0.03 -2.76 16 15 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 16 C 0.16 4.56 4.50 86.38 0.39 4.95 16 17 N -0.70 -16.59 5.46 -466.64 -2.55 -19.14 16 18 C 0.58 15.59 7.79 86.59 0.67 16.26 16 19 O -0.57 -18.89 14.39 -4.11 -0.06 -18.95 16 20 C -0.05 -1.09 6.96 40.79 0.28 -0.81 16 21 C -0.17 -2.60 10.50 22.65 0.24 -2.36 16 22 C 0.01 0.15 12.03 85.18 1.02 1.17 16 23 N -0.29 -5.25 11.90 -57.14 -0.68 -5.93 16 24 N -0.27 -5.50 3.33 -334.69 -1.12 -6.61 16 25 C 0.07 1.15 6.17 86.38 0.53 1.68 16 26 C 0.26 4.49 5.55 71.98 0.40 4.88 16 27 F -0.20 -3.76 17.34 44.97 0.78 -2.98 16 28 F -0.21 -5.33 17.12 44.97 0.77 -4.56 16 29 C 0.14 5.47 6.75 86.73 0.59 6.06 16 30 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 4.13 5.87 -2.38 -0.01 4.12 16 33 H 0.39 11.29 9.12 -74.05 -0.68 10.61 16 34 H 0.05 1.91 7.52 -2.39 -0.02 1.89 16 35 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.42 7.50 7.50 -92.70 -0.70 6.80 16 37 H 0.19 1.75 7.58 -2.91 -0.02 1.73 16 38 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.16 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 2.76 5.97 -2.39 -0.01 2.74 16 41 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.01 0.55 7.68 -2.38 -0.02 0.53 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.93 367.36 0.97 -74.96 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.29 Total: 22.32 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 6.05 Total: 23.47 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.47 Total: -119.45 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.90 Total: -40.96 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 1.55 Total: -7.55 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.93 0.97 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958070121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -75.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds