Wall clock time and date at job start Wed Apr 1 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33807 * 125.07290 * 2 1 4 4 C 1.34906 * 111.34974 * 180.28726 * 3 2 1 5 5 C 1.38969 * 133.11788 * 179.68044 * 4 3 2 6 6 C 1.37846 * 119.97263 * 180.02562 * 5 4 3 7 7 C 1.38687 * 120.65543 * 0.03238 * 6 5 4 8 8 C 1.37850 * 120.20049 * 359.97438 * 7 6 5 9 9 C 1.39110 * 119.62815 * 359.97438 * 8 7 6 10 10 C 1.36045 * 125.07683 * 179.79582 * 2 1 3 11 11 C 1.47086 * 127.13628 * 0.02562 * 10 2 1 12 12 O 1.21655 * 119.99531 * 269.67539 * 11 10 2 13 13 N 1.34775 * 120.00039 * 89.68552 * 11 10 2 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.88599 * 302.57784 * 15 14 13 17 17 C 1.54908 * 111.00321 * 66.45747 * 15 14 13 18 18 N 1.47416 * 104.83435 * 155.08366 * 17 15 14 19 19 C 1.36935 * 125.65006 * 155.83740 * 18 17 15 20 20 H 1.08005 * 120.00050 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00322 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99391 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00405 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46758 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47114 * 119.99621 * 23 21 19 26 26 H 1.48497 * 109.47236 * 240.00371 * 23 21 19 27 27 C 1.47020 * 108.70399 * 335.86885 * 18 17 15 28 28 C 1.54325 * 107.27144 * 1.06255 * 27 18 17 29 29 H 1.08996 * 110.72683 * 140.55198 * 28 27 18 30 30 O 1.42897 * 110.71817 * 263.83007 * 28 27 18 31 31 H 1.08996 * 109.46953 * 270.20169 * 1 2 3 32 32 H 1.09003 * 109.47160 * 30.20477 * 1 2 3 33 33 H 1.09003 * 109.47019 * 150.20061 * 1 2 3 34 34 H 1.07993 * 120.01292 * 0.04493 * 5 4 3 35 35 H 1.08003 * 119.66958 * 180.02562 * 6 5 4 36 36 H 1.07999 * 119.90007 * 179.97438 * 7 6 5 37 37 H 1.07995 * 120.18453 * 179.97438 * 8 7 6 38 38 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 40 40 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 41 41 H 1.09001 * 110.36572 * 273.92263 * 17 15 14 42 42 H 1.09006 * 110.36696 * 36.13079 * 17 15 14 43 43 H 0.97003 * 119.99602 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.88229 * 120.47119 * 27 18 17 45 45 H 1.08995 * 109.88771 * 241.48762 * 27 18 17 46 46 H 0.96703 * 113.99993 * 293.52016 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2759 1.0951 0.0000 4 6 3.5865 0.7751 -0.0063 5 6 4.7498 1.5352 -0.0145 6 6 5.9795 0.9122 -0.0202 7 6 6.0711 -0.4716 -0.0184 8 6 4.9281 -1.2422 -0.0104 9 6 3.6819 -0.6240 -0.0036 10 6 2.2889 -1.1134 0.0040 11 6 1.8395 -2.5139 0.0084 12 8 1.6591 -3.0914 1.0639 13 7 1.6280 -3.1575 -1.1567 14 6 1.1810 -4.5526 -1.1521 15 6 1.0175 -5.0405 -2.5931 16 1 0.3154 -4.4105 -3.1393 17 6 2.3858 -5.1037 -3.3165 18 7 2.2039 -6.1072 -4.3809 19 6 2.9304 -6.1827 -5.5392 20 1 3.7145 -5.4656 -5.7326 21 6 2.6583 -7.1803 -6.4655 22 7 1.7024 -8.0539 -6.2300 23 14 3.6488 -7.2829 -8.0459 24 1 4.6564 -6.1922 -8.0702 25 1 4.3386 -8.5961 -8.1134 26 1 2.7386 -7.1412 -9.2106 27 6 1.1129 -7.0133 -3.9932 28 6 0.5766 -6.5276 -2.6301 29 1 -0.5097 -6.6088 -2.5918 30 8 1.1777 -7.2599 -1.5604 31 1 -0.3633 0.0036 1.0276 32 1 -0.3633 0.8882 -0.5170 33 1 -0.3633 -0.8918 -0.5107 34 1 4.6905 2.6135 -0.0162 35 1 6.8805 1.5077 -0.0261 36 1 7.0408 -0.9470 -0.0232 37 1 4.9998 -2.3198 -0.0094 38 1 1.7717 -2.6970 -1.9982 39 1 0.2252 -4.6262 -0.6333 40 1 1.9203 -5.1694 -0.6411 41 1 2.6319 -4.1334 -3.7480 42 1 3.1666 -5.4193 -2.6245 43 1 1.5126 -8.7512 -6.8770 44 1 0.3182 -6.9768 -4.7384 45 1 1.4907 -8.0317 -3.9040 46 1 0.9342 -8.1955 -1.5386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958091906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:50 Heat of formation + Delta-G solvation = -29.015100 kcal Electronic energy + Delta-G solvation = -29752.546846 eV Core-core repulsion = 25609.346171 eV Total energy + Delta-G solvation = -4143.200674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.80795 -39.52209 -38.23648 -38.14487 -34.94153 -34.56358 -33.62552 -32.09409 -31.54311 -30.65367 -29.71772 -27.91173 -27.37494 -25.60166 -24.07530 -23.29009 -22.57328 -21.80127 -20.53109 -20.02975 -19.57400 -18.07804 -17.37616 -17.20528 -16.71143 -16.49572 -16.00530 -15.71047 -15.38979 -14.96593 -14.84948 -14.29100 -14.04352 -14.00628 -13.76041 -13.67246 -13.48539 -13.44171 -13.14834 -12.69206 -12.61587 -12.60213 -12.44201 -12.02397 -11.85327 -11.44481 -11.25539 -11.20247 -10.85480 -10.67678 -10.49849 -10.40292 -10.13651 -10.04395 -9.88661 -9.79244 -9.20898 -8.94589 -8.87993 -8.69091 -8.37280 -6.89330 -5.77464 -3.10402 0.60066 1.08417 1.83997 2.30003 2.49461 3.26524 3.36412 3.42255 3.44493 3.47275 4.05152 4.39784 4.44333 4.66977 4.68855 4.78439 4.84635 4.88758 5.03670 5.07439 5.09134 5.15128 5.28972 5.31950 5.39253 5.40098 5.51258 5.57048 5.61941 5.87635 5.91421 5.95924 6.01829 6.06616 6.10224 6.20671 6.34348 6.36925 6.37176 6.45959 6.58264 6.85516 6.86551 7.35618 7.45892 7.53121 7.71772 8.17710 8.19328 8.22827 9.15610 9.76201 10.41618 11.34647 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002765 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.589321 B =10123.821612 C =11448.086721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 O -0.185 6.185 4 C 0.050 3.950 5 C -0.105 4.105 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.069 4.069 9 C -0.096 4.096 10 C -0.223 4.223 11 C 0.590 3.410 12 O -0.532 6.532 13 N -0.715 5.715 14 C 0.139 3.861 15 C -0.110 4.110 16 H 0.089 0.911 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.153 3.847 28 C 0.083 3.917 29 H 0.057 0.943 30 O -0.564 6.564 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.403 0.597 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.025 0.975 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 17.281 12.693 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 O -0.085 6.085 4 C 0.003 3.997 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.147 4.147 8 C -0.087 4.087 9 C -0.098 4.098 10 C -0.228 4.228 11 C 0.375 3.625 12 O -0.409 6.409 13 N -0.366 5.366 14 C 0.016 3.984 15 C -0.129 4.129 16 H 0.107 0.893 17 C 0.019 3.981 18 N -0.329 5.329 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.028 3.972 28 C 0.023 3.977 29 H 0.075 0.925 30 O -0.369 6.369 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.237 0.763 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.140 17.562 13.373 22.074 hybrid contribution 0.398 -0.628 -1.513 1.686 sum 0.258 16.934 11.860 20.675 Atomic orbital electron populations 1.20577 0.83862 1.04985 1.04710 1.22542 0.93808 0.82544 0.97706 1.83774 1.15300 1.33625 1.75850 1.19503 0.82826 0.93213 1.04142 1.19931 0.88016 0.99684 1.04691 1.20939 0.96386 0.94784 0.99192 1.21092 0.98415 0.93696 1.01472 1.20597 0.89967 1.00531 0.97587 1.19464 0.92616 0.92621 1.05066 1.20648 0.92365 0.94052 1.15702 1.17099 0.77099 0.84264 0.84071 1.90826 1.51316 1.67573 1.31137 1.46140 1.67940 1.14288 1.08214 1.21244 1.00454 0.79816 0.96912 1.22684 1.00309 0.95428 0.94510 0.89303 1.21558 0.93092 0.92976 0.90483 1.44372 1.39215 1.31155 1.18160 1.19125 1.11904 1.11075 0.93343 0.90327 1.24796 0.98984 0.97795 0.98956 1.69942 1.32865 1.18617 1.35821 0.86023 0.79111 0.77444 0.83071 1.20488 1.21726 1.21746 1.21861 0.91273 0.94228 0.89872 1.23111 0.94900 0.90706 0.88970 0.92484 1.86402 1.74225 1.25194 1.51127 0.88794 0.89372 0.88633 0.84918 0.84582 0.84935 0.85204 0.76300 0.91638 0.90021 0.94600 0.95692 0.93791 0.92964 0.93172 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.20 36.01 0.37 -0.29 16 2 C 0.08 0.96 7.30 -35.09 -0.26 0.70 16 3 O -0.18 -2.19 10.53 5.34 0.06 -2.14 16 4 C 0.05 0.60 7.39 -38.56 -0.28 0.31 16 5 C -0.10 -0.99 10.06 -39.45 -0.40 -1.39 16 6 C -0.09 -0.80 10.01 -39.56 -0.40 -1.19 16 7 C -0.13 -1.23 10.04 -39.56 -0.40 -1.63 16 8 C -0.07 -0.83 10.09 -39.40 -0.40 -1.23 16 9 C -0.10 -1.28 6.39 -104.98 -0.67 -1.95 16 10 C -0.22 -3.02 6.06 -103.25 -0.63 -3.64 16 11 C 0.59 8.90 7.20 -12.67 -0.09 8.80 16 12 O -0.53 -9.89 17.11 5.23 0.09 -9.80 16 13 N -0.71 -9.83 5.40 -61.49 -0.33 -10.17 16 14 C 0.14 2.12 4.74 -4.04 -0.02 2.10 16 15 C -0.11 -1.82 3.03 -88.47 -0.27 -2.09 16 16 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.15 2.94 6.40 -2.53 -0.02 2.92 16 18 N -0.60 -15.06 3.39 -170.08 -0.58 -15.64 16 19 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 20 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 23 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.15 3.55 5.14 -3.06 -0.02 3.53 16 28 C 0.08 1.48 4.09 -24.90 -0.10 1.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 O -0.56 -9.69 12.10 -35.23 -0.43 -10.12 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.40 4.94 8.32 -40.82 -0.34 4.60 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 45 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 46 H 0.38 5.08 9.12 45.56 0.42 5.50 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -34.69 386.36 -9.32 -44.01 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.68 Total: 7.58 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.82 Total: -0.39 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.34 Total: -51.80 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.28 Total: -22.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.69 -9.32 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958091906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.992 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds