Wall clock time and date at job start Wed Apr 1 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33812 * 125.07576 * 2 1 4 4 C 1.34904 * 111.35322 * 180.28792 * 3 2 1 5 5 C 1.38965 * 133.11891 * 179.67946 * 4 3 2 6 6 C 1.37836 * 119.97719 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.65338 * 0.03880 * 6 5 4 8 8 C 1.37842 * 120.19904 * 359.97438 * 7 6 5 9 9 C 1.39106 * 119.62954 * 0.02562 * 8 7 6 10 10 C 1.36053 * 125.07759 * 179.80248 * 2 1 3 11 11 C 1.47080 * 127.13812 * 0.02562 * 10 2 1 12 12 O 1.21650 * 119.99600 * 269.68007 * 11 10 2 13 13 N 1.34772 * 120.00388 * 89.68250 * 11 10 2 14 14 C 1.46494 * 119.99980 * 179.72371 * 13 11 10 15 15 C 1.53005 * 109.47218 * 180.27802 * 14 13 11 16 16 H 1.08999 * 110.64086 * 56.68694 * 15 14 13 17 17 C 1.54325 * 110.71492 * 293.54424 * 15 14 13 18 18 N 1.47031 * 107.27174 * 219.44302 * 17 15 14 19 19 C 1.36936 * 125.64768 * 178.90854 * 18 17 15 20 20 H 1.08000 * 119.99954 * 341.51084 * 19 18 17 21 21 C 1.38810 * 119.99562 * 161.51657 * 19 18 17 22 22 N 1.31615 * 119.99787 * 157.61841 * 21 19 18 23 23 Si 1.86800 * 120.00304 * 337.61572 * 21 19 18 24 24 H 1.48497 * 109.47078 * 84.53827 * 23 21 19 25 25 H 1.48500 * 109.47310 * 204.53810 * 23 21 19 26 26 H 1.48504 * 109.46855 * 324.53617 * 23 21 19 27 27 C 1.47422 * 108.69839 * 358.94416 * 18 17 15 28 28 C 1.54902 * 104.83811 * 24.12501 * 27 18 17 29 29 H 1.09005 * 111.00063 * 81.06345 * 28 27 18 30 30 O 1.42892 * 111.01160 * 204.91667 * 28 27 18 31 31 H 1.09003 * 109.46735 * 270.19507 * 1 2 3 32 32 H 1.08993 * 109.47413 * 30.19889 * 1 2 3 33 33 H 1.09002 * 109.46871 * 150.20038 * 1 2 3 34 34 H 1.08001 * 120.01285 * 0.04663 * 5 4 3 35 35 H 1.08004 * 119.67547 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.89908 * 179.97438 * 7 6 5 37 37 H 1.07995 * 120.18118 * 179.97438 * 8 7 6 38 38 H 0.96997 * 119.99972 * 0.02562 * 13 11 10 39 39 H 1.08997 * 109.47423 * 300.27281 * 14 13 11 40 40 H 1.08998 * 109.47227 * 60.27790 * 14 13 11 41 41 H 1.08995 * 109.88845 * 338.86319 * 17 15 14 42 42 H 1.09004 * 109.88319 * 100.03006 * 17 15 14 43 43 H 0.97004 * 120.00456 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36499 * 142.96917 * 27 18 17 45 45 H 1.09004 * 110.36303 * 265.17566 * 27 18 17 46 46 H 0.96707 * 114.00168 * 292.20068 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2759 1.0951 0.0000 4 6 3.5865 0.7751 -0.0063 5 6 4.7498 1.5352 -0.0146 6 6 5.9794 0.9123 -0.0202 7 6 6.0711 -0.4716 -0.0185 8 6 4.9282 -1.2421 -0.0106 9 6 3.6820 -0.6240 -0.0049 10 6 2.2889 -1.1134 0.0038 11 6 1.8396 -2.5139 0.0081 12 8 1.6591 -3.0915 1.0635 13 7 1.6280 -3.1574 -1.1570 14 6 1.1864 -4.5542 -1.1526 15 6 1.0289 -5.0438 -2.5936 16 1 1.9609 -4.9206 -3.1453 17 6 -0.1256 -4.3017 -3.2992 18 7 -0.8362 -5.2869 -4.1275 19 6 -1.9392 -5.0341 -4.8987 20 1 -2.5348 -4.1517 -4.7164 21 6 -2.2919 -5.9119 -5.9144 22 7 -3.5309 -5.9423 -6.3573 23 14 -1.0080 -7.0501 -6.6530 24 1 -0.8910 -8.2724 -5.8178 25 1 -1.4153 -7.4286 -8.0299 26 1 0.3031 -6.3541 -6.6983 27 6 -0.1650 -6.5922 -3.9897 28 6 0.5606 -6.5227 -2.6229 29 1 -0.1280 -6.7308 -1.8040 30 8 1.6769 -7.4141 -2.5896 31 1 -0.3633 0.0035 1.0277 32 1 -0.3634 0.8881 -0.5169 33 1 -0.3633 -0.8918 -0.5107 34 1 4.6905 2.6136 -0.0162 35 1 6.8804 1.5078 -0.0262 36 1 7.0408 -0.9469 -0.0234 37 1 4.9999 -2.3197 -0.0098 38 1 1.7724 -2.6970 -1.9984 39 1 1.9268 -5.1678 -0.6394 40 1 0.2297 -4.6312 -0.6361 41 1 -0.8051 -3.8823 -2.5573 42 1 0.2745 -3.5074 -3.9294 43 1 -3.7774 -6.5555 -7.0674 44 1 -0.8991 -7.3980 -3.9890 45 1 0.5542 -6.7360 -4.7961 46 1 1.4336 -8.3500 -2.6062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958091939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:59 Heat of formation + Delta-G solvation = -27.015704 kcal Electronic energy + Delta-G solvation = -29672.308671 eV Core-core repulsion = 25529.194697 eV Total energy + Delta-G solvation = -4143.113974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.86679 -39.68744 -38.52171 -38.22369 -35.47823 -34.80476 -33.68401 -32.30287 -31.57975 -30.77343 -30.34127 -28.05198 -27.54482 -26.04805 -23.97085 -23.34568 -22.55830 -21.86141 -21.25899 -20.16764 -19.81268 -18.20423 -17.37681 -17.27072 -16.89962 -16.76415 -16.13939 -15.94256 -15.66875 -15.25615 -15.17600 -14.45801 -14.33707 -14.07217 -13.96764 -13.66787 -13.46291 -13.44144 -13.23091 -13.07693 -12.82510 -12.67024 -12.51141 -12.25820 -12.15503 -12.00877 -11.44562 -11.37873 -11.28542 -10.98731 -10.66576 -10.51078 -10.44980 -10.18452 -9.97632 -9.66254 -9.46128 -9.11531 -8.95643 -8.76533 -8.43667 -7.16421 -6.03142 -3.35076 0.53323 1.00386 1.77931 2.25444 2.39463 3.12366 3.26566 3.38456 3.42689 3.44848 4.00498 4.24501 4.34751 4.46826 4.60343 4.67045 4.74749 4.80629 4.86165 4.93038 4.96074 5.05401 5.07009 5.14117 5.22163 5.27631 5.38688 5.39114 5.54906 5.58149 5.59095 5.75089 5.87021 5.88520 5.94155 6.01636 6.06340 6.11037 6.28413 6.30488 6.34649 6.44035 6.49819 6.61440 6.79653 7.39834 7.56762 7.81798 8.09200 8.22091 8.72831 9.59075 10.05250 11.12568 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.002564 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.217352 B =10917.909340 C =11452.630054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 O -0.183 6.183 4 C 0.050 3.950 5 C -0.103 4.103 6 C -0.096 4.096 7 C -0.129 4.129 8 C -0.072 4.072 9 C -0.095 4.095 10 C -0.229 4.229 11 C 0.593 3.407 12 O -0.531 6.531 13 N -0.714 5.714 14 C 0.133 3.867 15 C -0.107 4.107 16 H 0.091 0.909 17 C 0.140 3.860 18 N -0.605 5.605 19 C -0.246 4.246 20 H 0.094 0.906 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.276 1.276 27 C 0.084 3.916 28 C 0.097 3.903 29 H 0.073 0.927 30 O -0.565 6.565 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.405 0.595 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.434 11.783 13.374 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.084 6.084 4 C 0.003 3.997 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.147 4.147 8 C -0.090 4.090 9 C -0.097 4.097 10 C -0.234 4.234 11 C 0.378 3.622 12 O -0.407 6.407 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.126 4.126 16 H 0.109 0.891 17 C 0.015 3.985 18 N -0.333 5.333 19 C -0.372 4.372 20 H 0.112 0.888 21 C -0.176 4.176 22 N -0.549 5.549 23 Si 0.714 3.286 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.202 1.202 27 C -0.042 4.042 28 C 0.037 3.963 29 H 0.091 0.909 30 O -0.369 6.369 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.322 12.146 13.977 24.684 hybrid contribution 0.493 -1.107 -1.098 1.636 sum 16.815 11.039 12.878 23.884 Atomic orbital electron populations 1.20633 0.83598 1.05382 1.04853 1.22630 0.93905 0.82459 0.96762 1.83796 1.15259 1.33677 1.75685 1.19508 0.82904 0.93195 1.04070 1.19952 0.88018 0.99780 1.04363 1.20932 0.96402 0.94765 0.99340 1.21072 0.98315 0.93729 1.01608 1.20543 0.89988 1.00330 0.98127 1.19460 0.92570 0.92661 1.04984 1.20580 0.92312 0.93945 1.16526 1.17085 0.76893 0.84318 0.83922 1.90826 1.51208 1.67583 1.31132 1.46034 1.68186 1.13888 1.08450 1.21440 1.00587 0.80543 0.96498 1.22446 1.00585 0.94546 0.95018 0.89119 1.21450 0.91085 0.92462 0.93526 1.44594 1.32278 1.02846 1.53538 1.18628 0.98761 1.10556 1.09294 0.88818 1.25006 0.96253 0.98383 0.97917 1.69837 1.15714 1.39059 1.30261 0.86979 0.82592 0.80798 0.78226 1.21320 1.22923 1.20214 1.22618 0.95937 0.90918 0.94746 1.22954 0.87038 0.88626 0.97691 0.90917 1.86429 1.33469 1.19781 1.97260 0.88656 0.89168 0.88332 0.84843 0.84580 0.85026 0.85395 0.76074 0.90868 0.90787 0.94229 0.94718 0.92586 0.92006 0.94648 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.20 36.00 0.37 -0.37 16 2 C 0.09 1.04 7.30 -35.09 -0.26 0.79 16 3 O -0.18 -2.13 10.53 5.33 0.06 -2.08 16 4 C 0.05 0.57 7.39 -38.56 -0.28 0.28 16 5 C -0.10 -0.90 10.06 -39.46 -0.40 -1.29 16 6 C -0.10 -0.71 10.01 -39.56 -0.40 -1.11 16 7 C -0.13 -1.07 10.04 -39.56 -0.40 -1.46 16 8 C -0.07 -0.76 10.09 -39.40 -0.40 -1.16 16 9 C -0.10 -1.17 6.39 -104.98 -0.67 -1.84 16 10 C -0.23 -2.94 6.06 -103.25 -0.63 -3.57 16 11 C 0.59 8.38 7.20 -12.68 -0.09 8.29 16 12 O -0.53 -9.32 17.11 5.23 0.09 -9.23 16 13 N -0.71 -9.00 5.40 -61.50 -0.33 -9.34 16 14 C 0.13 1.81 4.99 -4.04 -0.02 1.79 16 15 C -0.11 -1.63 2.75 -88.78 -0.24 -1.88 16 16 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 17 C 0.14 2.55 6.52 -3.06 -0.02 2.53 16 18 N -0.60 -13.99 3.21 -170.07 -0.55 -14.53 16 19 C -0.25 -6.75 10.57 -15.06 -0.16 -6.91 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.02 0.67 5.43 -17.43 -0.09 0.57 16 22 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 23 Si 0.88 22.15 24.27 -169.99 -4.13 18.03 16 24 H -0.29 -6.83 6.49 56.52 0.37 -6.46 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.28 -6.91 6.66 56.52 0.38 -6.53 16 27 C 0.08 1.74 4.43 -2.53 -0.01 1.73 16 28 C 0.10 1.59 3.88 -24.59 -0.10 1.49 16 29 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 30 O -0.56 -8.32 13.47 -35.23 -0.47 -8.80 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.85 7.86 -51.93 -0.41 0.44 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.40 4.50 8.31 -40.82 -0.34 4.17 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 41 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 1.36 6.64 -51.93 -0.34 1.01 16 45 H 0.04 0.79 5.57 -51.93 -0.29 0.50 16 46 H 0.38 4.04 9.12 45.56 0.42 4.46 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -35.13 382.19 -8.22 -43.35 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.63 Total: 5.51 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.79 Total: -2.12 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.10 Total: -50.43 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.33 Total: -20.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.13 Total: 18.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.13 -8.22 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958091939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.335 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds