Wall clock time and date at job start Wed Apr 1 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33812 * 125.07576 * 2 1 4 4 C 1.34904 * 111.35322 * 180.28792 * 3 2 1 5 5 C 1.38965 * 133.11891 * 179.67946 * 4 3 2 6 6 C 1.37836 * 119.97719 * 180.02562 * 5 4 3 7 7 C 1.38694 * 120.65338 * 0.03880 * 6 5 4 8 8 C 1.37842 * 120.19904 * 359.97438 * 7 6 5 9 9 C 1.39106 * 119.62954 * 0.02562 * 8 7 6 10 10 C 1.36053 * 125.07759 * 179.80248 * 2 1 3 11 11 C 1.47080 * 127.13812 * 0.02562 * 10 2 1 12 12 O 1.21650 * 119.99600 * 269.68007 * 11 10 2 13 13 N 1.34772 * 120.00388 * 89.68250 * 11 10 2 14 14 C 1.46494 * 119.99980 * 179.72371 * 13 11 10 15 15 C 1.53005 * 109.47218 * 180.27802 * 14 13 11 16 16 H 1.08999 * 110.64086 * 56.68694 * 15 14 13 17 17 C 1.54325 * 110.71492 * 293.54424 * 15 14 13 18 18 N 1.47031 * 107.27174 * 219.44302 * 17 15 14 19 19 C 1.36936 * 125.64768 * 178.90854 * 18 17 15 20 20 H 1.08000 * 119.99954 * 341.51084 * 19 18 17 21 21 C 1.38810 * 119.99562 * 161.51657 * 19 18 17 22 22 N 1.31615 * 119.99787 * 157.61841 * 21 19 18 23 23 Si 1.86800 * 120.00304 * 337.61572 * 21 19 18 24 24 H 1.48497 * 109.47078 * 84.53827 * 23 21 19 25 25 H 1.48500 * 109.47310 * 204.53810 * 23 21 19 26 26 H 1.48504 * 109.46855 * 324.53617 * 23 21 19 27 27 C 1.47422 * 108.69839 * 358.94416 * 18 17 15 28 28 C 1.54902 * 104.83811 * 24.12501 * 27 18 17 29 29 H 1.09005 * 111.00063 * 81.06345 * 28 27 18 30 30 O 1.42892 * 111.01160 * 204.91667 * 28 27 18 31 31 H 1.09003 * 109.46735 * 270.19507 * 1 2 3 32 32 H 1.08993 * 109.47413 * 30.19889 * 1 2 3 33 33 H 1.09002 * 109.46871 * 150.20038 * 1 2 3 34 34 H 1.08001 * 120.01285 * 0.04663 * 5 4 3 35 35 H 1.08004 * 119.67547 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.89908 * 179.97438 * 7 6 5 37 37 H 1.07995 * 120.18118 * 179.97438 * 8 7 6 38 38 H 0.96997 * 119.99972 * 0.02562 * 13 11 10 39 39 H 1.08997 * 109.47423 * 300.27281 * 14 13 11 40 40 H 1.08998 * 109.47227 * 60.27790 * 14 13 11 41 41 H 1.08995 * 109.88845 * 338.86319 * 17 15 14 42 42 H 1.09004 * 109.88319 * 100.03006 * 17 15 14 43 43 H 0.97004 * 120.00456 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36499 * 142.96917 * 27 18 17 45 45 H 1.09004 * 110.36303 * 265.17566 * 27 18 17 46 46 H 0.96707 * 114.00168 * 292.20068 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2759 1.0951 0.0000 4 6 3.5865 0.7751 -0.0063 5 6 4.7498 1.5352 -0.0146 6 6 5.9794 0.9123 -0.0202 7 6 6.0711 -0.4716 -0.0185 8 6 4.9282 -1.2421 -0.0106 9 6 3.6820 -0.6240 -0.0049 10 6 2.2889 -1.1134 0.0038 11 6 1.8396 -2.5139 0.0081 12 8 1.6591 -3.0915 1.0635 13 7 1.6280 -3.1574 -1.1570 14 6 1.1864 -4.5542 -1.1526 15 6 1.0289 -5.0438 -2.5936 16 1 1.9609 -4.9206 -3.1453 17 6 -0.1256 -4.3017 -3.2992 18 7 -0.8362 -5.2869 -4.1275 19 6 -1.9392 -5.0341 -4.8987 20 1 -2.5348 -4.1517 -4.7164 21 6 -2.2919 -5.9119 -5.9144 22 7 -3.5309 -5.9423 -6.3573 23 14 -1.0080 -7.0501 -6.6530 24 1 -0.8910 -8.2724 -5.8178 25 1 -1.4153 -7.4286 -8.0299 26 1 0.3031 -6.3541 -6.6983 27 6 -0.1650 -6.5922 -3.9897 28 6 0.5606 -6.5227 -2.6229 29 1 -0.1280 -6.7308 -1.8040 30 8 1.6769 -7.4141 -2.5896 31 1 -0.3633 0.0035 1.0277 32 1 -0.3634 0.8881 -0.5169 33 1 -0.3633 -0.8918 -0.5107 34 1 4.6905 2.6136 -0.0162 35 1 6.8804 1.5078 -0.0262 36 1 7.0408 -0.9469 -0.0234 37 1 4.9999 -2.3197 -0.0098 38 1 1.7724 -2.6970 -1.9984 39 1 1.9268 -5.1678 -0.6394 40 1 0.2297 -4.6312 -0.6361 41 1 -0.8051 -3.8823 -2.5573 42 1 0.2745 -3.5074 -3.9294 43 1 -3.7774 -6.5555 -7.0674 44 1 -0.8991 -7.3980 -3.9890 45 1 0.5542 -6.7360 -4.7961 46 1 1.4336 -8.3500 -2.6062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958091939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:58 Heat of formation + Delta-G solvation = -53.526423 kcal Electronic energy + Delta-G solvation = -29673.458262 eV Core-core repulsion = 25529.194697 eV Total energy + Delta-G solvation = -4144.263565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.67021 -40.88476 -39.89797 -38.91219 -36.80211 -36.18264 -34.59555 -34.12337 -32.29485 -31.99104 -31.38354 -29.56411 -28.45074 -27.48658 -25.38338 -24.12127 -23.68766 -22.86640 -22.57411 -21.47323 -20.93892 -19.22160 -18.88394 -18.51869 -18.01748 -17.68600 -17.36301 -17.09426 -16.71459 -16.42606 -16.28597 -15.91611 -15.48729 -15.20848 -15.04930 -14.83198 -14.71771 -14.55231 -14.38576 -14.11938 -13.94799 -13.86138 -13.62058 -13.32573 -13.27465 -13.21478 -12.95858 -12.72180 -12.46593 -12.34244 -12.16886 -11.99754 -11.72062 -11.63865 -11.30890 -11.07135 -11.02593 -10.75382 -10.24263 -9.67861 -9.21159 -9.11461 -8.21009 -5.48780 -0.20652 0.28463 0.95763 1.26780 1.30967 1.37837 1.45691 1.47972 2.08651 2.37783 2.67872 2.85734 3.12065 3.25562 3.38153 3.45340 3.60997 3.67037 3.88094 3.93739 3.96865 4.08027 4.20692 4.21702 4.25498 4.31867 4.37285 4.42586 4.50770 4.60562 4.68849 4.71637 4.72589 4.80682 4.92477 4.92959 4.95932 5.14216 5.17089 5.19274 5.28531 5.33397 5.45026 5.61857 5.62180 6.03991 6.07053 6.34820 6.69098 6.80934 7.01791 7.48828 8.03411 8.98402 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.002564 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.217352 B =10917.909340 C =11452.630054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.096 3.904 3 O -0.189 6.189 4 C 0.026 3.974 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.122 4.122 8 C -0.097 4.097 9 C -0.119 4.119 10 C -0.258 4.258 11 C 0.601 3.399 12 O -0.570 6.570 13 N -0.704 5.704 14 C 0.144 3.856 15 C -0.091 4.091 16 H 0.098 0.902 17 C 0.138 3.862 18 N -0.623 5.623 19 C -0.235 4.235 20 H 0.065 0.935 21 C -0.034 4.034 22 N -0.953 5.953 23 Si 0.945 3.055 24 H -0.267 1.267 25 H -0.309 1.309 26 H -0.274 1.274 27 C 0.077 3.923 28 C 0.113 3.887 29 H 0.087 0.913 30 O -0.565 6.565 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.263 0.737 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.414 12.381 14.209 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.089 6.089 4 C -0.021 4.021 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.140 4.140 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.262 4.262 11 C 0.387 3.613 12 O -0.450 6.450 13 N -0.355 5.355 14 C 0.020 3.980 15 C -0.110 4.110 16 H 0.116 0.884 17 C 0.013 3.987 18 N -0.351 5.351 19 C -0.364 4.364 20 H 0.083 0.917 21 C -0.229 4.229 22 N -0.599 5.599 23 Si 0.774 3.226 24 H -0.193 1.193 25 H -0.238 1.238 26 H -0.200 1.200 27 C -0.049 4.049 28 C 0.052 3.948 29 H 0.105 0.895 30 O -0.372 6.372 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.192 0.808 36 H 0.177 0.823 37 H 0.142 0.858 38 H 0.249 0.751 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 19.349 12.737 14.820 27.500 hybrid contribution -0.367 -1.199 -1.303 1.808 sum 18.982 11.538 13.517 26.003 Atomic orbital electron populations 1.20763 0.81899 1.06141 1.05700 1.23053 0.94859 0.82103 0.95401 1.83784 1.15670 1.33702 1.75792 1.19959 0.83338 0.93381 1.05375 1.20411 0.87521 1.01027 1.03344 1.21419 0.97228 0.94726 0.97280 1.21470 0.98620 0.94267 0.99610 1.20718 0.90429 1.00576 0.99748 1.19689 0.92781 0.93404 1.06176 1.20566 0.93358 0.93465 1.18838 1.17212 0.75925 0.84710 0.83447 1.90796 1.53112 1.68620 1.32451 1.45937 1.67456 1.13520 1.08597 1.21263 1.00564 0.80995 0.95162 1.22286 0.99425 0.93700 0.95568 0.88422 1.21597 0.91849 0.92077 0.93152 1.44678 1.31939 1.05271 1.53243 1.18586 0.99485 1.09032 1.09251 0.91697 1.25611 0.97705 1.00747 0.98835 1.69957 1.17549 1.40997 1.31440 0.85986 0.79911 0.79731 0.77021 1.19285 1.23752 1.19970 1.22716 0.95555 0.89313 0.97279 1.22710 0.87369 0.89484 0.95217 0.89539 1.86407 1.32584 1.21232 1.96965 0.87679 0.87203 0.88705 0.82504 0.80843 0.82317 0.85802 0.75099 0.90592 0.91104 0.93787 0.94104 0.92783 0.93360 0.95444 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.20 71.24 0.73 -0.71 16 2 C 0.10 2.16 7.30 25.18 0.18 2.34 16 3 O -0.19 -4.30 10.53 -3.83 -0.04 -4.34 16 4 C 0.03 0.56 7.39 22.93 0.17 0.73 16 5 C -0.10 -1.59 10.06 22.35 0.22 -1.37 16 6 C -0.09 -1.03 10.01 22.28 0.22 -0.80 16 7 C -0.12 -1.71 10.04 22.28 0.22 -1.49 16 8 C -0.10 -1.98 10.09 22.38 0.23 -1.76 16 9 C -0.12 -2.91 6.39 -20.09 -0.13 -3.04 16 10 C -0.26 -6.67 6.06 -18.98 -0.12 -6.78 16 11 C 0.60 16.98 7.20 86.56 0.62 17.60 16 12 O -0.57 -20.19 17.11 -4.19 -0.07 -20.26 16 13 N -0.70 -17.17 5.40 -466.71 -2.52 -19.68 16 14 C 0.14 3.70 4.99 86.38 0.43 4.13 16 15 C -0.09 -2.58 2.75 -9.60 -0.03 -2.61 16 16 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 17 C 0.14 4.85 6.52 86.73 0.57 5.41 16 18 N -0.62 -28.51 3.21 -691.98 -2.22 -30.73 16 19 C -0.24 -13.13 10.57 84.03 0.89 -12.24 16 20 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 21 C -0.03 -1.97 5.43 84.86 0.46 -1.51 16 22 N -0.95 -59.12 13.97 21.65 0.30 -58.82 16 23 Si 0.94 46.08 24.27 68.60 1.66 47.74 16 24 H -0.27 -12.05 6.49 99.48 0.65 -11.40 16 25 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 26 H -0.27 -13.10 6.66 99.48 0.66 -12.44 16 27 C 0.08 3.08 4.43 86.85 0.38 3.46 16 28 C 0.11 3.41 3.88 31.98 0.12 3.53 16 29 H 0.09 2.42 8.05 -2.38 -0.02 2.40 16 30 O -0.56 -14.79 13.47 -148.98 -2.01 -16.79 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.60 7.86 -2.39 -0.02 1.58 16 34 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.41 8.79 8.31 -92.71 -0.77 8.02 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 41 H 0.04 1.52 7.76 -2.39 -0.02 1.51 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 43 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.05 2.05 6.64 -2.39 -0.02 2.04 16 45 H 0.03 1.17 5.57 -2.38 -0.01 1.16 16 46 H 0.40 7.12 9.12 -74.05 -0.68 6.45 16 Total: -1.00 -77.80 382.19 -0.22 -78.03 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.52 Total: 19.95 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.19 Total: 4.90 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.43 Total: -109.23 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.12 Total: -41.40 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.66 Total: 47.74 kcal Total: -77.80 -0.22 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958091939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.500 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds