Wall clock time and date at job start Wed Apr 1 2020 02:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.46247 * 126.95804 * 2 1 4 4 C 1.39708 * 134.18785 * 359.97438 * 3 2 1 5 5 C 1.36617 * 119.70732 * 180.30609 * 4 3 2 6 6 C 1.38840 * 120.44792 * 359.95825 * 5 4 3 7 7 C 1.37797 * 120.74008 * 0.02562 * 6 5 4 8 8 C 1.39032 * 119.85785 * 359.97438 * 7 6 5 9 9 O 1.34709 * 133.24477 * 180.02562 * 8 7 6 10 10 C 1.34947 * 110.86439 * 180.02562 * 9 8 7 11 11 C 1.46975 * 125.13625 * 179.97438 * 10 9 8 12 12 O 1.21648 * 120.00273 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99668 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99895 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46858 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.64067 * 303.30523 * 15 14 13 17 17 C 1.54320 * 110.72234 * 66.45360 * 15 14 13 18 18 N 1.47029 * 107.27322 * 140.73520 * 17 15 14 19 19 C 1.36933 * 125.64936 * 181.02206 * 18 17 15 20 20 H 1.08003 * 119.99721 * 13.63215 * 19 18 17 21 21 C 1.38816 * 119.99961 * 193.62770 * 19 18 17 22 22 N 1.31616 * 119.99775 * 27.26821 * 21 19 18 23 23 Si 1.86796 * 119.99890 * 207.26642 * 21 19 18 24 24 H 1.48502 * 109.47389 * 60.00434 * 23 21 19 25 25 H 1.48499 * 109.47223 * 300.00034 * 23 21 19 26 26 H 1.48500 * 109.47095 * 180.02562 * 23 21 19 27 27 C 1.47425 * 108.70123 * 1.28326 * 18 17 15 28 28 C 1.55140 * 104.72236 * 335.55406 * 27 18 17 29 29 H 1.08998 * 111.19212 * 279.19468 * 28 27 18 30 30 O 1.42894 * 110.93636 * 155.28796 * 28 27 18 31 31 H 1.09007 * 109.47373 * 270.17798 * 1 2 3 32 32 H 1.09004 * 109.47158 * 30.17934 * 1 2 3 33 33 H 1.09001 * 109.47169 * 150.18035 * 1 2 3 34 34 H 1.07990 * 120.14392 * 0.26442 * 4 3 2 35 35 H 1.08005 * 119.77632 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.62919 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.07285 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00190 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.47451 * 59.99349 * 14 13 11 40 40 H 1.09004 * 109.46573 * 299.99734 * 14 13 11 41 41 H 1.08996 * 109.88396 * 21.31395 * 17 15 14 42 42 H 1.09003 * 110.01118 * 260.21543 * 17 15 14 43 43 H 0.97006 * 120.00147 * 5.85176 * 22 21 19 44 44 H 1.08995 * 110.36729 * 94.48746 * 27 18 17 45 45 H 1.08999 * 110.36759 * 216.81246 * 27 18 17 46 46 H 0.96701 * 114.00090 * 67.96154 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1686 0.0000 4 6 2.1712 2.5491 -0.0004 5 6 3.2394 3.4007 -0.0066 6 6 4.5357 2.9033 -0.0116 7 6 4.7690 1.5453 -0.0109 8 6 3.6979 0.6589 -0.0047 9 8 3.6125 -0.6855 -0.0020 10 6 2.3235 -1.0851 0.0038 11 6 1.8716 -2.4837 0.0075 12 8 0.6821 -2.7385 0.0122 13 7 2.7751 -3.4838 0.0055 14 6 2.3246 -4.8779 0.0086 15 6 3.5404 -5.8066 0.0061 16 1 4.1832 -5.5958 -0.8485 17 6 4.3283 -5.6782 1.3268 18 7 4.7713 -7.0285 1.7039 19 6 5.4856 -7.3494 2.8272 20 1 5.5822 -6.6322 3.6289 21 6 6.0855 -8.5966 2.9355 22 7 6.4458 -9.2499 1.8512 23 14 6.3814 -9.3475 4.6201 24 1 5.0841 -9.5112 5.3240 25 1 7.2650 -8.4545 5.4119 26 1 7.0309 -10.6737 4.4637 27 6 4.3246 -7.9788 0.6691 28 6 3.0995 -7.2943 0.0077 29 1 2.1993 -7.4343 0.6060 30 8 2.9052 -7.7723 -1.3248 31 1 -0.3634 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5166 33 1 -0.3633 -0.8916 -0.5110 34 1 1.1650 2.9412 0.0034 35 1 3.0745 4.4680 -0.0074 36 1 5.3705 3.5885 -0.0160 37 1 5.7818 1.1701 -0.0144 38 1 3.7235 -3.2806 0.0013 39 1 1.7209 -5.0666 -0.8791 40 1 1.7270 -5.0646 0.9009 41 1 3.6838 -5.2688 2.1046 42 1 5.1935 -5.0308 1.1836 43 1 6.3706 -8.8259 0.9820 44 1 5.1144 -8.1395 -0.0647 45 1 4.0303 -8.9245 1.1241 46 1 2.6290 -8.6977 -1.3744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958654012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:21 Heat of formation + Delta-G solvation = -33.188902 kcal Electronic energy + Delta-G solvation = -29343.394463 eV Core-core repulsion = 25200.012799 eV Total energy + Delta-G solvation = -4143.381664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.80556 -39.79096 -38.48580 -38.12219 -35.47287 -35.04524 -34.07173 -32.48784 -30.92468 -30.47982 -29.63254 -28.06502 -27.58917 -25.60975 -24.36456 -23.26613 -22.95376 -21.16872 -20.55580 -20.28347 -19.94986 -18.44662 -17.63334 -17.37107 -17.09144 -16.71896 -16.45824 -15.88144 -15.35556 -15.12838 -14.68265 -14.39309 -14.36474 -14.04715 -13.75002 -13.64540 -13.57269 -13.35115 -13.08902 -13.01534 -12.59941 -12.57973 -12.48389 -12.25386 -12.12145 -12.02443 -11.30388 -11.21829 -10.97172 -10.76517 -10.58299 -10.39777 -10.21519 -10.06030 -10.01414 -9.77133 -9.37928 -9.22855 -8.99770 -8.49188 -8.46421 -7.05015 -6.15919 -3.20192 0.26588 0.98508 1.54177 2.21139 2.96291 2.98798 3.32832 3.46972 3.50778 3.68708 4.10512 4.21672 4.38264 4.49877 4.57088 4.61608 4.72349 4.84674 4.88838 5.01095 5.03986 5.11311 5.21643 5.30641 5.31396 5.46728 5.52780 5.63775 5.65536 5.68076 5.74103 5.80131 5.84291 5.94596 5.99951 6.04752 6.09389 6.14715 6.19335 6.28491 6.45354 6.62635 6.71603 6.78901 6.89048 7.32807 7.67384 7.91183 7.93705 8.40652 8.93807 9.74114 10.25731 11.17153 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.002352 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.547931 B =11903.498545 C =13064.088804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.110 4.110 8 C 0.073 3.927 9 O -0.182 6.182 10 C -0.032 4.032 11 C 0.599 3.401 12 O -0.516 6.516 13 N -0.710 5.710 14 C 0.133 3.867 15 C -0.105 4.105 16 H 0.089 0.911 17 C 0.141 3.859 18 N -0.600 5.600 19 C -0.339 4.339 20 H 0.069 0.931 21 C -0.025 4.025 22 N -0.919 5.919 23 Si 1.065 2.935 24 H -0.293 1.293 25 H -0.293 1.293 26 H -0.285 1.285 27 C 0.120 3.880 28 C 0.092 3.908 29 H 0.067 0.933 30 O -0.565 6.565 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.027 0.973 43 H 0.269 0.731 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 22.385 -6.380 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.102 4.102 7 C -0.129 4.129 8 C 0.025 3.975 9 O -0.084 6.084 10 C -0.081 4.081 11 C 0.384 3.616 12 O -0.394 6.394 13 N -0.360 5.360 14 C 0.010 3.990 15 C -0.125 4.125 16 H 0.107 0.893 17 C 0.015 3.985 18 N -0.329 5.329 19 C -0.466 4.466 20 H 0.086 0.914 21 C -0.227 4.227 22 N -0.560 5.560 23 Si 0.894 3.106 24 H -0.221 1.221 25 H -0.220 1.220 26 H -0.210 1.210 27 C -0.007 4.007 28 C 0.031 3.969 29 H 0.085 0.915 30 O -0.370 6.370 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.876 21.201 -5.635 23.665 hybrid contribution -0.012 1.068 -0.582 1.216 sum -8.888 22.269 -6.218 24.770 Atomic orbital electron populations 1.20447 0.87399 1.03878 1.03194 1.21392 0.97042 0.89458 1.00599 1.19823 0.92364 0.94352 1.07750 1.20349 0.99817 0.90212 0.97343 1.20800 0.92240 1.00076 1.02769 1.21020 0.97560 0.93732 0.97912 1.20050 0.96954 0.91184 1.04690 1.19738 0.95560 0.81087 1.01156 1.84035 1.27029 1.20941 1.76351 1.21788 0.81110 0.94818 1.10430 1.16595 0.85869 0.81655 0.77487 1.90842 1.15262 1.82435 1.50884 1.45953 1.10229 1.06434 1.73357 1.21499 0.96568 0.78107 1.02826 1.22407 0.96281 0.93618 1.00160 0.89257 1.21395 0.95589 0.89576 0.91950 1.44393 1.63888 1.00394 1.24204 1.19771 1.30590 1.03148 0.93097 0.91357 1.25766 0.96475 0.95470 1.04969 1.70801 1.43468 1.42249 0.99484 0.83521 0.76072 0.76414 0.74546 1.22055 1.21965 1.21017 1.22219 0.92847 0.94036 0.91561 1.23089 0.98011 0.93006 0.82781 0.91508 1.86411 1.91457 1.31910 1.27242 0.90401 0.91349 0.88929 0.85270 0.85109 0.84512 0.84569 0.75638 0.90555 0.90699 0.95028 0.95521 0.91906 0.94633 0.92538 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.81 36.00 0.35 -0.59 16 2 C -0.08 -1.00 6.39 -102.28 -0.65 -1.65 16 3 C -0.14 -1.60 6.37 -105.19 -0.67 -2.27 16 4 C -0.06 -0.50 10.06 -39.62 -0.40 -0.90 16 5 C -0.14 -0.98 9.98 -39.94 -0.40 -1.38 16 6 C -0.08 -0.60 10.01 -39.52 -0.40 -0.99 16 7 C -0.11 -1.01 10.07 -39.45 -0.40 -1.41 16 8 C 0.07 0.86 7.41 -38.35 -0.28 0.58 16 9 O -0.18 -2.40 10.28 2.79 0.03 -2.37 16 10 C -0.03 -0.43 7.07 -36.92 -0.26 -0.69 16 11 C 0.60 8.71 7.79 -12.72 -0.10 8.61 16 12 O -0.52 -8.41 14.62 5.24 0.08 -8.33 16 13 N -0.71 -9.84 5.40 -61.53 -0.33 -10.17 16 14 C 0.13 1.96 5.01 -4.04 -0.02 1.94 16 15 C -0.11 -1.77 2.74 -88.79 -0.24 -2.02 16 16 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.14 2.84 6.52 -3.06 -0.02 2.82 16 18 N -0.60 -15.01 3.33 -169.93 -0.57 -15.58 16 19 C -0.34 -9.49 10.05 -15.06 -0.15 -9.65 16 20 H 0.07 1.91 7.96 -52.48 -0.42 1.49 16 21 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 22 N -0.92 -27.51 12.82 55.49 0.71 -26.80 16 23 Si 1.07 25.16 30.00 -169.99 -5.10 20.06 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.12 2.71 4.96 -2.40 -0.01 2.70 16 28 C 0.09 1.62 3.90 -24.45 -0.10 1.53 16 29 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 30 O -0.57 -9.04 13.47 -35.23 -0.47 -9.51 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.41 5.26 8.04 -40.82 -0.33 4.93 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 41 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.27 8.07 5.83 -40.82 -0.24 7.83 16 44 H 0.04 0.88 6.84 -51.93 -0.36 0.53 16 45 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 46 H 0.38 4.52 9.12 45.56 0.42 4.94 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -34.07 383.16 -9.21 -43.29 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.50 Total: 7.80 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.83 Total: -4.16 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.19 Total: -52.55 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.37 Total: -20.22 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.07 -9.21 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958654012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.096 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds