Wall clock time and date at job start Wed Apr 1 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.46247 * 126.95804 * 2 1 4 4 C 1.39708 * 134.18785 * 359.97438 * 3 2 1 5 5 C 1.36617 * 119.70732 * 180.30609 * 4 3 2 6 6 C 1.38840 * 120.44792 * 359.95825 * 5 4 3 7 7 C 1.37797 * 120.74008 * 0.02562 * 6 5 4 8 8 C 1.39032 * 119.85785 * 359.97438 * 7 6 5 9 9 O 1.34709 * 133.24477 * 180.02562 * 8 7 6 10 10 C 1.34947 * 110.86439 * 180.02562 * 9 8 7 11 11 C 1.46975 * 125.13625 * 179.97438 * 10 9 8 12 12 O 1.21648 * 120.00273 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99668 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99895 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46858 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.64067 * 303.30523 * 15 14 13 17 17 C 1.54320 * 110.72234 * 66.45360 * 15 14 13 18 18 N 1.47029 * 107.27322 * 140.73520 * 17 15 14 19 19 C 1.36933 * 125.64936 * 181.02206 * 18 17 15 20 20 H 1.08003 * 119.99721 * 13.63215 * 19 18 17 21 21 C 1.38816 * 119.99961 * 193.62770 * 19 18 17 22 22 N 1.31616 * 119.99775 * 27.26821 * 21 19 18 23 23 Si 1.86796 * 119.99890 * 207.26642 * 21 19 18 24 24 H 1.48502 * 109.47389 * 60.00434 * 23 21 19 25 25 H 1.48499 * 109.47223 * 300.00034 * 23 21 19 26 26 H 1.48500 * 109.47095 * 180.02562 * 23 21 19 27 27 C 1.47425 * 108.70123 * 1.28326 * 18 17 15 28 28 C 1.55140 * 104.72236 * 335.55406 * 27 18 17 29 29 H 1.08998 * 111.19212 * 279.19468 * 28 27 18 30 30 O 1.42894 * 110.93636 * 155.28796 * 28 27 18 31 31 H 1.09007 * 109.47373 * 270.17798 * 1 2 3 32 32 H 1.09004 * 109.47158 * 30.17934 * 1 2 3 33 33 H 1.09001 * 109.47169 * 150.18035 * 1 2 3 34 34 H 1.07990 * 120.14392 * 0.26442 * 4 3 2 35 35 H 1.08005 * 119.77632 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.62919 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.07285 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00190 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.47451 * 59.99349 * 14 13 11 40 40 H 1.09004 * 109.46573 * 299.99734 * 14 13 11 41 41 H 1.08996 * 109.88396 * 21.31395 * 17 15 14 42 42 H 1.09003 * 110.01118 * 260.21543 * 17 15 14 43 43 H 0.97006 * 120.00147 * 5.85176 * 22 21 19 44 44 H 1.08995 * 110.36729 * 94.48746 * 27 18 17 45 45 H 1.08999 * 110.36759 * 216.81246 * 27 18 17 46 46 H 0.96701 * 114.00090 * 67.96154 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1686 0.0000 4 6 2.1712 2.5491 -0.0004 5 6 3.2394 3.4007 -0.0066 6 6 4.5357 2.9033 -0.0116 7 6 4.7690 1.5453 -0.0109 8 6 3.6979 0.6589 -0.0047 9 8 3.6125 -0.6855 -0.0020 10 6 2.3235 -1.0851 0.0038 11 6 1.8716 -2.4837 0.0075 12 8 0.6821 -2.7385 0.0122 13 7 2.7751 -3.4838 0.0055 14 6 2.3246 -4.8779 0.0086 15 6 3.5404 -5.8066 0.0061 16 1 4.1832 -5.5958 -0.8485 17 6 4.3283 -5.6782 1.3268 18 7 4.7713 -7.0285 1.7039 19 6 5.4856 -7.3494 2.8272 20 1 5.5822 -6.6322 3.6289 21 6 6.0855 -8.5966 2.9355 22 7 6.4458 -9.2499 1.8512 23 14 6.3814 -9.3475 4.6201 24 1 5.0841 -9.5112 5.3240 25 1 7.2650 -8.4545 5.4119 26 1 7.0309 -10.6737 4.4637 27 6 4.3246 -7.9788 0.6691 28 6 3.0995 -7.2943 0.0077 29 1 2.1993 -7.4343 0.6060 30 8 2.9052 -7.7723 -1.3248 31 1 -0.3634 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5166 33 1 -0.3633 -0.8916 -0.5110 34 1 1.1650 2.9412 0.0034 35 1 3.0745 4.4680 -0.0074 36 1 5.3705 3.5885 -0.0160 37 1 5.7818 1.1701 -0.0144 38 1 3.7235 -3.2806 0.0013 39 1 1.7209 -5.0666 -0.8791 40 1 1.7270 -5.0646 0.9009 41 1 3.6838 -5.2688 2.1046 42 1 5.1935 -5.0308 1.1836 43 1 6.3706 -8.8259 0.9820 44 1 5.1144 -8.1395 -0.0647 45 1 4.0303 -8.9245 1.1241 46 1 2.6290 -8.6977 -1.3744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958654012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:20 Heat of formation + Delta-G solvation = -57.288890 kcal Electronic energy + Delta-G solvation = -29344.439517 eV Core-core repulsion = 25200.012799 eV Total energy + Delta-G solvation = -4144.426718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.63445 -40.97921 -39.96309 -38.83163 -36.87471 -36.49881 -34.96681 -34.23197 -31.82317 -31.50099 -30.80383 -29.61883 -28.69194 -27.13973 -25.76448 -24.42529 -23.75103 -22.51284 -21.81576 -21.59852 -21.09232 -19.75011 -19.35153 -18.49492 -18.11104 -17.64810 -17.34804 -16.95732 -16.66054 -16.41700 -15.93037 -15.81705 -15.54012 -15.38211 -15.15724 -14.85009 -14.55981 -14.51281 -14.14388 -14.06482 -13.93120 -13.80437 -13.67624 -13.29312 -13.25597 -12.81730 -12.78375 -12.67156 -12.45451 -12.38508 -11.96670 -11.91530 -11.78323 -11.64251 -11.33571 -11.00552 -10.98613 -10.58778 -10.36978 -9.71479 -9.25483 -9.11717 -8.38261 -5.39002 -0.54657 0.30595 0.72143 1.33845 1.56125 1.63683 1.82983 1.91100 1.93510 2.58467 2.67905 2.97498 3.17042 3.25825 3.40162 3.48960 3.53912 3.70349 3.71830 3.88270 3.91931 4.09165 4.20586 4.22736 4.27028 4.38024 4.38735 4.47211 4.57873 4.62035 4.69773 4.73103 4.76518 4.87779 4.92314 4.97005 5.05007 5.06331 5.14193 5.17798 5.32421 5.36801 5.44764 5.53090 5.58142 5.95855 6.24145 6.25240 6.75280 6.80750 6.82456 7.63045 8.18266 8.94403 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.002352 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.547931 B =11903.498545 C =13064.088804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.076 4.076 3 C -0.164 4.164 4 C -0.063 4.063 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.129 4.129 8 C 0.046 3.954 9 O -0.198 6.198 10 C -0.066 4.066 11 C 0.600 3.400 12 O -0.539 6.539 13 N -0.708 5.708 14 C 0.146 3.854 15 C -0.089 4.089 16 H 0.091 0.909 17 C 0.140 3.860 18 N -0.624 5.624 19 C -0.349 4.349 20 H 0.064 0.936 21 C -0.078 4.078 22 N -0.946 5.946 23 Si 1.117 2.883 24 H -0.279 1.279 25 H -0.275 1.275 26 H -0.290 1.290 27 C 0.124 3.876 28 C 0.111 3.889 29 H 0.083 0.917 30 O -0.565 6.565 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.024 0.976 43 H 0.256 0.744 44 H 0.010 0.990 45 H 0.030 0.970 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 25.361 -6.218 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.165 4.165 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.089 4.089 7 C -0.148 4.148 8 C -0.002 4.002 9 O -0.101 6.101 10 C -0.115 4.115 11 C 0.387 3.613 12 O -0.419 6.419 13 N -0.358 5.358 14 C 0.023 3.977 15 C -0.108 4.108 16 H 0.109 0.891 17 C 0.015 3.985 18 N -0.352 5.352 19 C -0.478 4.478 20 H 0.082 0.918 21 C -0.273 4.273 22 N -0.589 5.589 23 Si 0.941 3.059 24 H -0.205 1.205 25 H -0.201 1.201 26 H -0.216 1.216 27 C -0.002 4.002 28 C 0.050 3.950 29 H 0.101 0.899 30 O -0.372 6.372 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.164 0.836 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.028 0.972 45 H 0.049 0.951 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.737 24.202 -5.491 26.658 hybrid contribution 0.299 0.344 -0.677 0.817 sum -9.438 24.546 -6.168 27.011 Atomic orbital electron populations 1.20491 0.86196 1.04350 1.03674 1.21788 0.97955 0.89679 0.98494 1.20057 0.91792 0.95394 1.09268 1.20735 1.01704 0.89062 0.96597 1.21281 0.91599 1.01687 1.00723 1.21524 0.99002 0.93178 0.95153 1.20414 0.96932 0.91922 1.05482 1.20294 0.96970 0.80736 1.02210 1.83971 1.26871 1.22063 1.77167 1.21607 0.81813 0.94540 1.13521 1.16706 0.85552 0.82181 0.76830 1.90815 1.15993 1.82999 1.52091 1.45881 1.10458 1.06055 1.73396 1.21289 0.95225 0.78094 1.03085 1.22226 0.96670 0.93728 0.98183 0.89112 1.21499 0.95826 0.87386 0.93799 1.44661 1.63628 1.02790 1.24120 1.20048 1.30327 1.03300 0.94078 0.91801 1.27176 0.96426 0.96230 1.07502 1.70911 1.45823 1.42654 0.99518 0.82835 0.76769 0.75484 0.70840 1.20534 1.20053 1.21644 1.22135 0.94205 0.93298 0.90586 1.22794 0.96150 0.92630 0.83423 0.89904 1.86385 1.91342 1.33710 1.25750 0.89776 0.88747 0.90493 0.82974 0.81601 0.81118 0.83615 0.75187 0.89781 0.90909 0.94617 0.95801 0.93330 0.97214 0.95149 0.75250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.81 71.23 0.70 -1.07 16 2 C -0.08 -1.84 6.39 -18.35 -0.12 -1.96 16 3 C -0.16 -3.55 6.37 -20.23 -0.13 -3.67 16 4 C -0.06 -0.90 10.06 22.25 0.22 -0.68 16 5 C -0.14 -1.36 9.98 22.03 0.22 -1.14 16 6 C -0.07 -0.77 10.01 22.31 0.22 -0.55 16 7 C -0.13 -2.19 10.07 22.36 0.23 -1.97 16 8 C 0.05 1.08 7.41 23.07 0.17 1.25 16 9 O -0.20 -5.43 10.28 -12.93 -0.13 -5.56 16 10 C -0.07 -1.83 7.07 24.00 0.17 -1.66 16 11 C 0.60 17.82 7.79 86.53 0.67 18.50 16 12 O -0.54 -17.77 14.62 -4.18 -0.06 -17.83 16 13 N -0.71 -19.77 5.40 -466.80 -2.52 -22.29 16 14 C 0.15 4.22 5.01 86.38 0.43 4.65 16 15 C -0.09 -2.96 2.74 -9.61 -0.03 -2.98 16 16 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 17 C 0.14 5.71 6.52 86.73 0.57 6.28 16 18 N -0.62 -31.90 3.33 -691.52 -2.30 -34.20 16 19 C -0.35 -19.97 10.05 84.03 0.84 -19.13 16 20 H 0.06 3.62 7.96 -2.91 -0.02 3.60 16 21 C -0.08 -4.48 5.09 84.86 0.43 -4.05 16 22 N -0.95 -58.34 12.82 21.65 0.28 -58.06 16 23 Si 1.12 51.22 30.00 68.60 2.06 53.28 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 C 0.12 5.79 4.96 86.94 0.43 6.23 16 28 C 0.11 3.88 3.90 32.07 0.12 4.00 16 29 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 30 O -0.56 -17.33 13.47 -148.98 -2.01 -19.34 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.77 6.38 -2.39 -0.02 1.75 16 34 H 0.15 1.37 8.06 -2.92 -0.02 1.35 16 35 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.41 10.85 8.04 -92.71 -0.75 10.10 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 41 H 0.04 1.44 7.77 -2.39 -0.02 1.42 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.26 16.03 5.83 -92.70 -0.54 15.49 16 44 H 0.01 0.52 6.84 -2.39 -0.02 0.50 16 45 H 0.03 1.55 7.73 -2.39 -0.02 1.53 16 46 H 0.40 8.94 9.12 -74.06 -0.68 8.26 16 Total: -1.00 -76.35 383.16 0.32 -76.04 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.16 Total: 25.94 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.16 Total: 2.04 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.54 Total: -114.55 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.20 Total: -42.73 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.06 Total: 53.28 kcal Total: -76.35 0.32 -76.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958654012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.747 kcal (2) G-P(sol) polarization free energy of solvation -76.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds