Wall clock time and date at job start Wed Apr 1 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37845 * 120.07094 * 2 1 4 4 C 1.38787 * 120.73753 * 180.02562 * 3 2 1 5 5 C 1.36664 * 120.45110 * 359.97438 * 4 3 2 6 6 C 1.39667 * 119.70515 * 0.02562 * 5 4 3 7 7 C 1.46252 * 134.19547 * 179.97438 * 6 5 4 8 8 C 1.35802 * 106.08158 * 180.02562 * 7 6 5 9 9 C 1.46973 * 125.12860 * 179.97438 * 8 7 6 10 10 O 1.21661 * 119.99942 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00072 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99904 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47082 * 179.97438 * 12 11 9 14 14 H 1.08993 * 110.91799 * 308.90478 * 13 12 11 15 15 C 1.55134 * 110.90068 * 72.97573 * 13 12 11 16 16 N 1.47433 * 104.71921 * 155.27412 * 15 13 12 17 17 C 1.36935 * 125.64649 * 155.81890 * 16 15 13 18 18 H 1.08001 * 120.00208 * 5.55398 * 17 16 15 19 19 C 1.38820 * 119.99621 * 185.55699 * 17 16 15 20 20 N 1.31616 * 119.99919 * 7.31688 * 19 17 16 21 21 Si 1.86801 * 119.99720 * 187.32021 * 19 17 16 22 22 H 1.48499 * 109.47044 * 84.98770 * 21 19 17 23 23 H 1.48493 * 109.46968 * 204.98848 * 21 19 17 24 24 H 1.48499 * 109.46942 * 324.98890 * 21 19 17 25 25 C 1.47021 * 108.70105 * 335.55612 * 16 15 13 26 26 C 1.54320 * 107.27594 * 1.28306 * 25 16 15 27 27 H 1.08994 * 110.72470 * 140.55613 * 26 25 16 28 28 O 1.42906 * 110.72409 * 263.65965 * 26 25 16 29 29 O 1.34947 * 109.74486 * 0.25333 * 8 7 6 30 30 C 1.34716 * 110.86496 * 359.57395 * 29 8 7 31 31 H 1.08997 * 109.47085 * 89.99766 * 1 2 3 32 32 H 1.08995 * 109.47039 * 210.00258 * 1 2 3 33 33 H 1.09002 * 109.47111 * 329.99883 * 1 2 3 34 34 H 1.07993 * 119.63060 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.77849 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.14752 * 180.02562 * 5 4 3 37 37 H 1.08000 * 126.95916 * 0.02562 * 7 6 5 38 38 H 0.96988 * 119.99924 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.47246 * 60.00045 * 12 11 9 40 40 H 1.08997 * 109.47303 * 300.00330 * 12 11 9 41 41 H 1.09000 * 110.49712 * 36.44118 * 15 13 12 42 42 H 1.08996 * 110.34652 * 274.03377 * 15 13 12 43 43 H 0.97002 * 119.99191 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88245 * 120.70544 * 25 16 15 45 45 H 1.09002 * 109.87885 * 241.71177 * 25 16 15 46 46 H 0.96700 * 113.99151 * 298.54285 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2091 -0.0005 5 6 4.2918 0.0391 -0.0005 6 6 3.6109 -1.1804 -0.0006 7 6 4.0294 -2.5817 -0.0010 8 6 2.8867 -3.3156 -0.0013 9 6 2.8247 -4.7840 -0.0024 10 8 3.8517 -5.4362 -0.0026 11 7 1.6300 -5.4080 -0.0031 12 6 1.5682 -6.8718 -0.0036 13 6 0.1055 -7.3205 -0.0038 14 1 -0.4541 -6.8236 0.7887 15 6 -0.5481 -7.0766 -1.3895 16 7 -1.6557 -8.0473 -1.4572 17 6 -2.7776 -7.9250 -2.2328 18 1 -2.8644 -7.1062 -2.9317 19 6 -3.8035 -8.8535 -2.1206 20 7 -3.7649 -9.7655 -1.1724 21 14 -5.2387 -8.8085 -3.3155 22 1 -4.8830 -9.5616 -4.5449 23 1 -6.4297 -9.4291 -2.6820 24 1 -5.5441 -7.3990 -3.6694 25 6 -1.3533 -9.1712 -0.5590 26 6 -0.0031 -8.8631 0.1219 27 1 -0.0217 -9.1643 1.1693 28 8 1.0699 -9.5069 -0.5684 29 8 1.8168 -2.4932 -0.0067 30 6 2.2034 -1.2028 -0.0007 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6529 2.1253 -0.0004 35 1 4.1110 2.1527 -0.0001 36 1 5.3716 0.0574 -0.0005 37 1 5.0421 -2.9570 -0.0011 38 1 0.8113 -4.8881 -0.0033 39 1 2.0658 -7.2568 0.8865 40 1 2.0667 -7.2562 -0.8934 41 1 0.1696 -7.2639 -2.1882 42 1 -0.9316 -6.0584 -1.4537 43 1 -4.4816 -10.4145 -1.0943 44 1 -2.1355 -9.2646 0.1943 45 1 -1.2794 -10.0949 -1.1329 46 1 1.0052 -10.4716 -0.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958722886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:10 Heat of formation + Delta-G solvation = -53.991738 kcal Electronic energy + Delta-G solvation = -29269.984921 eV Core-core repulsion = 25125.701179 eV Total energy + Delta-G solvation = -4144.283742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.60301 -40.90420 -39.83036 -39.00393 -36.43407 -36.25495 -34.64719 -33.99957 -32.41716 -31.80672 -30.64209 -29.42887 -27.87022 -27.37812 -25.86626 -24.19751 -23.68630 -22.30721 -21.77803 -21.72885 -21.18099 -19.36630 -19.04395 -18.53481 -18.07579 -17.57583 -17.10068 -16.84947 -16.61567 -16.25439 -16.03393 -15.77591 -15.45168 -15.18785 -14.85072 -14.77683 -14.45399 -14.38392 -14.27851 -14.11411 -14.06340 -13.63126 -13.26913 -13.19339 -13.03390 -12.90751 -12.68522 -12.57992 -12.40482 -12.16237 -11.96090 -11.94440 -11.79963 -11.77258 -11.36428 -11.14332 -10.80777 -10.76752 -10.30880 -9.66633 -9.18248 -8.92565 -7.86319 -5.24597 -0.52852 0.32192 0.74085 1.32996 1.44803 1.47058 1.54769 1.95356 1.99423 2.47160 2.66988 3.22488 3.29803 3.35115 3.51591 3.52555 3.83766 3.86724 3.90588 3.95572 3.96173 4.02262 4.30195 4.37646 4.39405 4.48862 4.53812 4.57860 4.60327 4.76202 4.79726 4.85064 4.85327 4.94356 4.99218 5.12868 5.23974 5.29733 5.31999 5.39193 5.39976 5.45866 5.50250 5.55385 5.67086 5.98519 6.17034 6.29737 6.83994 6.92241 7.06812 7.73226 8.37774 9.21171 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.002441 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.873723 B =11469.734696 C =13274.928946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.129 4.129 5 C -0.072 4.072 6 C -0.161 4.161 7 C -0.109 4.109 8 C -0.046 4.046 9 C 0.599 3.401 10 O -0.549 6.549 11 N -0.705 5.705 12 C 0.154 3.846 13 C -0.094 4.094 14 H 0.107 0.893 15 C 0.141 3.859 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.152 3.848 26 C 0.099 3.901 27 H 0.089 0.911 28 O -0.570 6.570 29 O -0.193 6.193 30 C 0.045 3.955 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.181 0.819 38 H 0.414 0.586 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.016 0.984 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.040 0.960 45 H 0.004 0.996 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 21.913 6.217 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.162 4.162 7 C -0.129 4.129 8 C -0.095 4.095 9 C 0.386 3.614 10 O -0.429 6.429 11 N -0.354 5.354 12 C 0.031 3.969 13 C -0.113 4.113 14 H 0.125 0.875 15 C 0.016 3.984 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.805 3.195 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.194 1.194 25 C 0.027 3.973 26 C 0.039 3.961 27 H 0.106 0.894 28 O -0.378 6.378 29 O -0.095 6.095 30 C -0.003 4.003 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.198 0.802 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.022 0.978 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.775 21.828 6.099 27.055 hybrid contribution -1.502 -1.164 -0.699 2.024 sum 13.274 20.665 5.400 25.147 Atomic orbital electron populations 1.20801 0.89189 1.03876 1.03253 1.19270 0.97424 0.88196 1.04456 1.21394 0.94749 0.96842 0.96761 1.21242 0.94070 0.99043 1.00307 1.20731 1.01428 0.89412 0.97442 1.20165 0.93092 0.94438 1.08536 1.22999 0.99390 0.90678 0.99861 1.21798 0.86213 0.90430 1.11089 1.16764 0.84131 0.83710 0.76845 1.90862 1.34781 1.64900 1.52370 1.45961 1.08177 1.08522 1.72785 1.21040 0.95516 0.77534 1.02849 1.22620 0.94991 0.94871 0.98836 0.87532 1.21755 0.89146 0.92970 0.94503 1.44677 1.19101 1.20812 1.50329 1.19409 0.93868 1.09763 1.14221 0.90309 1.25614 1.01052 0.98472 1.00533 1.70118 1.34317 1.20810 1.34362 0.85119 0.78415 0.77938 0.78026 1.21558 1.21869 1.19358 1.21811 0.93439 0.89517 0.92580 1.22930 0.85926 0.91985 0.95270 0.89354 1.86367 1.46842 1.25345 1.79268 1.83969 1.33840 1.14988 1.76706 1.20068 0.93719 0.83405 1.03136 0.90537 0.92452 0.88619 0.81380 0.81645 0.82980 0.80167 0.74974 0.90211 0.91657 0.96611 0.93606 0.94278 0.94149 0.97797 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.02 71.24 0.71 -0.94 16 2 C -0.09 -1.63 5.89 -19.78 -0.12 -1.75 16 3 C -0.08 -0.93 9.67 22.31 0.22 -0.71 16 4 C -0.13 -1.37 9.98 22.03 0.22 -1.15 16 5 C -0.07 -1.05 10.06 22.25 0.22 -0.83 16 6 C -0.16 -3.45 6.38 -20.23 -0.13 -3.58 16 7 C -0.11 -2.56 10.80 23.79 0.26 -2.31 16 8 C -0.05 -1.23 7.07 24.00 0.17 -1.06 16 9 C 0.60 17.92 7.79 86.53 0.67 18.59 16 10 O -0.55 -19.26 16.83 -4.22 -0.07 -19.33 16 11 N -0.70 -19.56 5.50 -466.79 -2.57 -22.12 16 12 C 0.15 4.62 4.60 86.38 0.40 5.02 16 13 C -0.09 -3.08 2.99 -9.32 -0.03 -3.11 16 14 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 15 C 0.14 5.80 6.65 86.93 0.58 6.37 16 16 N -0.62 -31.80 3.39 -691.52 -2.35 -34.15 16 17 C -0.24 -13.66 10.26 84.04 0.86 -12.79 16 18 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 19 C -0.06 -3.58 5.45 84.86 0.46 -3.12 16 20 N -0.95 -55.87 10.45 21.65 0.23 -55.64 16 21 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.15 7.21 5.21 86.73 0.45 7.66 16 26 C 0.10 3.47 4.08 31.78 0.13 3.60 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 O -0.57 -18.96 12.27 -148.98 -1.83 -20.79 16 29 O -0.19 -5.07 10.28 -13.00 -0.13 -5.20 16 30 C 0.04 1.04 7.07 23.07 0.16 1.20 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.10 0.89 8.09 -2.39 -0.02 0.87 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.41 10.38 8.19 -92.72 -0.76 9.62 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.24 7.56 -2.39 -0.02 2.23 16 41 H 0.02 0.69 7.91 -2.39 -0.02 0.67 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.04 2.14 6.88 -2.39 -0.02 2.13 16 45 H 0.00 0.21 7.89 -2.39 -0.02 0.19 16 46 H 0.39 10.28 9.10 -74.06 -0.67 9.61 16 Total: -1.00 -74.12 386.35 0.15 -73.97 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.41 Total: 24.59 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.25 Total: 11.08 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -4.69 Total: -111.91 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -2.03 Total: -45.32 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.12 0.15 -73.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958722886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.978 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds