Wall clock time and date at job start Wed Apr 1 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37842 * 120.07062 * 2 1 4 4 C 1.38793 * 120.73945 * 179.97438 * 3 2 1 5 5 C 1.36658 * 120.44865 * 0.02562 * 4 3 2 6 6 C 1.39668 * 119.70574 * 359.69435 * 5 4 3 7 7 C 1.46250 * 134.18852 * 179.61872 * 6 5 4 8 8 C 1.35809 * 106.08032 * 180.48901 * 7 6 5 9 9 C 1.46972 * 125.12781 * 180.24919 * 8 7 6 10 10 O 1.21648 * 120.00522 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99962 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00009 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46737 * 180.02562 * 12 11 9 14 14 H 1.08996 * 110.64196 * 56.69247 * 13 12 11 15 15 C 1.54317 * 110.71924 * 293.54239 * 13 12 11 16 16 N 1.47026 * 107.27051 * 219.44676 * 15 13 12 17 17 C 1.36939 * 125.64688 * 178.90769 * 16 15 13 18 18 H 1.08001 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99804 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99858 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47280 * 90.00279 * 21 19 17 23 23 H 1.48508 * 109.46712 * 209.99958 * 21 19 17 24 24 H 1.48491 * 109.47358 * 329.99642 * 21 19 17 25 25 C 1.47421 * 108.70395 * 358.94072 * 16 15 13 26 26 C 1.54914 * 104.82918 * 24.12982 * 25 16 15 27 27 H 1.09001 * 111.00349 * 81.06747 * 26 25 16 28 28 O 1.42908 * 110.99988 * 204.91374 * 26 25 16 29 29 O 1.34952 * 109.74412 * 0.22620 * 8 7 6 30 30 C 1.34725 * 110.86096 * 0.02562 * 29 8 7 31 31 H 1.08996 * 109.47585 * 270.02602 * 1 2 3 32 32 H 1.09003 * 109.46991 * 30.02873 * 1 2 3 33 33 H 1.09006 * 109.47013 * 150.02379 * 1 2 3 34 34 H 1.07999 * 119.62814 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.77435 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.14567 * 179.97438 * 5 4 3 37 37 H 1.08002 * 126.96438 * 0.75874 * 7 6 5 38 38 H 0.96998 * 119.99559 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46617 * 299.99752 * 12 11 9 40 40 H 1.08991 * 109.47086 * 60.00302 * 12 11 9 41 41 H 1.08999 * 109.88749 * 338.86359 * 15 13 12 42 42 H 1.08999 * 109.88449 * 99.87539 * 15 13 12 43 43 H 0.97000 * 119.99598 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36813 * 142.96409 * 25 16 15 45 45 H 1.09000 * 110.36885 * 265.18434 * 25 16 15 46 46 H 0.96693 * 113.99944 * 292.19555 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2091 0.0005 5 6 4.2917 0.0392 0.0005 6 6 3.6109 -1.1803 0.0065 7 6 4.0295 -2.5816 0.0013 8 6 2.8868 -3.3156 0.0011 9 6 2.8249 -4.7840 0.0018 10 8 3.8518 -5.4361 0.0031 11 7 1.6303 -5.4081 0.0020 12 6 1.5685 -6.8718 0.0033 13 6 0.1058 -7.3205 0.0026 14 1 -0.4252 -6.8985 -0.8506 15 6 -0.5862 -6.9282 1.3249 16 7 -1.4667 -8.0429 1.7042 17 6 -2.2441 -8.0984 2.8302 18 1 -2.2424 -7.2746 3.5287 19 6 -3.0341 -9.2135 3.0739 20 7 -3.0365 -10.2171 2.2224 21 14 -4.0951 -9.2888 4.6095 22 1 -5.4323 -8.7136 4.3161 23 1 -4.2475 -10.7028 5.0370 24 1 -3.4489 -8.5101 5.6963 25 6 -1.3735 -9.0913 0.6720 26 6 0.0067 -8.8689 0.0045 27 1 0.8049 -9.3108 0.6008 28 8 0.0200 -9.3847 -1.3282 29 8 1.8168 -2.4932 0.0006 30 6 2.2035 -1.2027 -0.0001 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6528 2.1253 -0.0004 35 1 4.1109 2.1527 0.0001 36 1 5.3715 0.0575 0.0005 37 1 5.0422 -2.9569 0.0023 38 1 0.8115 -4.8881 0.0013 39 1 2.0669 -7.2572 -0.8863 40 1 2.0663 -7.2556 0.8937 41 1 0.1618 -6.7661 2.1010 42 1 -1.1735 -6.0213 1.1812 43 1 -3.5889 -10.9961 2.3926 44 1 -1.4185 -10.0795 1.1298 45 1 -2.1734 -8.9759 -0.0593 46 1 -0.0399 -10.3485 -1.3775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958722888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:14 Heat of formation + Delta-G solvation = -30.933622 kcal Electronic energy + Delta-G solvation = -29198.239699 eV Core-core repulsion = 25054.955832 eV Total energy + Delta-G solvation = -4143.283868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.78427 -39.74973 -38.41250 -38.14620 -35.27837 -34.77810 -33.92262 -32.34318 -31.69677 -30.47122 -29.43730 -27.61194 -27.24730 -25.82812 -24.40991 -22.97488 -22.93808 -21.06748 -20.90932 -20.26490 -19.83824 -18.28729 -17.78577 -17.07677 -16.79671 -16.67162 -16.15094 -15.76448 -15.40419 -15.18970 -14.93643 -14.28163 -14.12003 -14.06635 -13.77259 -13.69227 -13.38656 -13.28346 -13.04651 -12.89937 -12.70988 -12.43888 -12.26852 -12.00918 -11.99718 -11.60543 -11.32593 -11.28388 -11.02843 -10.84570 -10.68057 -10.50572 -10.33942 -10.09425 -9.92650 -9.71543 -9.22652 -9.16782 -8.92644 -8.73742 -8.45397 -6.94498 -5.74437 -3.17032 0.27682 1.00270 1.56546 2.19930 2.99285 3.01811 3.32429 3.35515 3.40619 3.42506 4.14648 4.22540 4.39127 4.49682 4.63568 4.67598 4.79730 4.86747 4.95338 5.04902 5.17869 5.18469 5.21685 5.33322 5.40520 5.44083 5.44219 5.62342 5.67545 5.85055 5.88046 5.95683 5.99264 5.99585 6.00861 6.07900 6.14462 6.18278 6.28454 6.37983 6.54000 6.72375 6.76449 7.32305 7.35358 7.51468 7.71227 7.93113 8.12668 8.25718 9.11798 9.72508 10.35412 11.29648 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002381 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.398535 B =11755.071114 C =13157.815611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.090 4.090 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.118 4.118 8 C -0.019 4.019 9 C 0.596 3.404 10 O -0.518 6.518 11 N -0.708 5.708 12 C 0.131 3.869 13 C -0.106 4.106 14 H 0.088 0.912 15 C 0.140 3.860 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 C 0.082 3.918 27 H 0.062 0.938 28 O -0.569 6.569 29 O -0.181 6.181 30 C 0.070 3.930 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.171 0.829 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.110 0.890 45 H 0.023 0.977 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 19.621 -6.849 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.108 4.108 4 C -0.152 4.152 5 C -0.086 4.086 6 C -0.141 4.141 7 C -0.138 4.138 8 C -0.069 4.069 9 C 0.381 3.619 10 O -0.396 6.396 11 N -0.358 5.358 12 C 0.008 3.992 13 C -0.125 4.125 14 H 0.106 0.894 15 C 0.014 3.986 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.003 3.997 26 C 0.021 3.979 27 H 0.080 0.920 28 O -0.374 6.374 29 O -0.082 6.082 30 C 0.022 3.978 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.188 0.812 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.041 0.959 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.459 19.503 -6.880 24.144 hybrid contribution -0.921 -0.289 0.914 1.329 sum 11.537 19.214 -5.967 23.193 Atomic orbital electron populations 1.20785 0.89967 1.03436 1.03072 1.18890 0.96511 0.88263 1.03699 1.20910 0.94222 0.96461 0.99254 1.20776 0.94027 0.98152 1.02279 1.20345 1.00080 0.89977 0.98169 1.19921 0.93024 0.93978 1.07131 1.22725 0.99286 0.90032 1.01786 1.22075 0.85459 0.91017 1.08335 1.16645 0.84537 0.83097 0.77615 1.90886 1.33932 1.63963 1.50792 1.45989 1.07969 1.08783 1.73039 1.21567 0.97167 0.77615 1.02810 1.22416 0.93868 0.96315 0.99908 0.89414 1.21371 0.92829 0.92210 0.92177 1.44314 1.49869 1.15271 1.23338 1.19091 1.17187 1.01975 0.96996 0.90270 1.24808 1.00218 0.96643 0.98945 1.69758 1.43317 1.07878 1.36192 0.86034 0.80243 0.76932 0.82065 1.21545 1.21575 1.20613 1.22550 0.90110 0.96912 0.90158 1.23309 1.00126 0.91736 0.82679 0.92019 1.86368 1.97166 1.26265 1.27590 1.84029 1.33836 1.14310 1.76042 1.19553 0.92783 0.83359 1.02142 0.90602 0.90923 0.91010 0.84608 0.85106 0.85192 0.81201 0.75634 0.90600 0.90701 0.95288 0.95689 0.93599 0.87265 0.95943 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.02 36.00 0.36 -0.54 16 2 C -0.07 -0.69 5.89 -104.49 -0.62 -1.31 16 3 C -0.09 -0.67 9.67 -39.52 -0.38 -1.06 16 4 C -0.13 -0.96 9.98 -39.95 -0.40 -1.36 16 5 C -0.07 -0.58 10.06 -39.62 -0.40 -0.97 16 6 C -0.14 -1.55 6.38 -105.19 -0.67 -2.22 16 7 C -0.12 -1.39 10.80 -37.24 -0.40 -1.79 16 8 C -0.02 -0.25 7.07 -36.92 -0.26 -0.51 16 9 C 0.60 8.73 7.79 -12.72 -0.10 8.63 16 10 O -0.52 -8.85 16.82 5.24 0.09 -8.77 16 11 N -0.71 -9.82 5.40 -61.53 -0.33 -10.16 16 12 C 0.13 1.99 4.99 -4.04 -0.02 1.97 16 13 C -0.11 -1.81 2.75 -88.79 -0.24 -2.06 16 14 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.14 2.81 6.52 -3.07 -0.02 2.79 16 16 N -0.60 -15.00 3.39 -170.07 -0.58 -15.57 16 17 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 21 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.13 3.02 5.62 -2.53 -0.01 3.00 16 26 C 0.08 1.52 3.88 -24.58 -0.10 1.43 16 27 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 28 O -0.57 -9.62 13.47 -35.23 -0.47 -10.10 16 29 O -0.18 -2.31 10.28 2.73 0.03 -2.29 16 30 C 0.07 0.82 7.07 -38.36 -0.27 0.55 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.41 5.15 8.04 -40.82 -0.33 4.82 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.18 8.06 -51.93 -0.42 0.77 16 41 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.38 4.94 9.12 45.56 0.42 5.35 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -32.75 386.75 -9.34 -42.09 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.65 Total: 8.11 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.78 Total: -0.12 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.35 Total: -51.44 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.36 Total: -21.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.75 -9.34 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958722888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.152 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds