Wall clock time and date at job start Wed Apr 1 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37842 * 120.07062 * 2 1 4 4 C 1.38793 * 120.73945 * 179.97438 * 3 2 1 5 5 C 1.36658 * 120.44865 * 0.02562 * 4 3 2 6 6 C 1.39668 * 119.70574 * 359.69435 * 5 4 3 7 7 C 1.46250 * 134.18852 * 179.61872 * 6 5 4 8 8 C 1.35809 * 106.08032 * 180.48901 * 7 6 5 9 9 C 1.46972 * 125.12781 * 180.24919 * 8 7 6 10 10 O 1.21648 * 120.00522 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99962 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00009 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46737 * 180.02562 * 12 11 9 14 14 H 1.08996 * 110.64196 * 56.69247 * 13 12 11 15 15 C 1.54317 * 110.71924 * 293.54239 * 13 12 11 16 16 N 1.47026 * 107.27051 * 219.44676 * 15 13 12 17 17 C 1.36939 * 125.64688 * 178.90769 * 16 15 13 18 18 H 1.08001 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99804 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99858 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47280 * 90.00279 * 21 19 17 23 23 H 1.48508 * 109.46712 * 209.99958 * 21 19 17 24 24 H 1.48491 * 109.47358 * 329.99642 * 21 19 17 25 25 C 1.47421 * 108.70395 * 358.94072 * 16 15 13 26 26 C 1.54914 * 104.82918 * 24.12982 * 25 16 15 27 27 H 1.09001 * 111.00349 * 81.06747 * 26 25 16 28 28 O 1.42908 * 110.99988 * 204.91374 * 26 25 16 29 29 O 1.34952 * 109.74412 * 0.22620 * 8 7 6 30 30 C 1.34725 * 110.86096 * 0.02562 * 29 8 7 31 31 H 1.08996 * 109.47585 * 270.02602 * 1 2 3 32 32 H 1.09003 * 109.46991 * 30.02873 * 1 2 3 33 33 H 1.09006 * 109.47013 * 150.02379 * 1 2 3 34 34 H 1.07999 * 119.62814 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.77435 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.14567 * 179.97438 * 5 4 3 37 37 H 1.08002 * 126.96438 * 0.75874 * 7 6 5 38 38 H 0.96998 * 119.99559 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46617 * 299.99752 * 12 11 9 40 40 H 1.08991 * 109.47086 * 60.00302 * 12 11 9 41 41 H 1.08999 * 109.88749 * 338.86359 * 15 13 12 42 42 H 1.08999 * 109.88449 * 99.87539 * 15 13 12 43 43 H 0.97000 * 119.99598 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36813 * 142.96409 * 25 16 15 45 45 H 1.09000 * 110.36885 * 265.18434 * 25 16 15 46 46 H 0.96693 * 113.99944 * 292.19555 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2091 0.0005 5 6 4.2917 0.0392 0.0005 6 6 3.6109 -1.1803 0.0065 7 6 4.0295 -2.5816 0.0013 8 6 2.8868 -3.3156 0.0011 9 6 2.8249 -4.7840 0.0018 10 8 3.8518 -5.4361 0.0031 11 7 1.6303 -5.4081 0.0020 12 6 1.5685 -6.8718 0.0033 13 6 0.1058 -7.3205 0.0026 14 1 -0.4252 -6.8985 -0.8506 15 6 -0.5862 -6.9282 1.3249 16 7 -1.4667 -8.0429 1.7042 17 6 -2.2441 -8.0984 2.8302 18 1 -2.2424 -7.2746 3.5287 19 6 -3.0341 -9.2135 3.0739 20 7 -3.0365 -10.2171 2.2224 21 14 -4.0951 -9.2888 4.6095 22 1 -5.4323 -8.7136 4.3161 23 1 -4.2475 -10.7028 5.0370 24 1 -3.4489 -8.5101 5.6963 25 6 -1.3735 -9.0913 0.6720 26 6 0.0067 -8.8689 0.0045 27 1 0.8049 -9.3108 0.6008 28 8 0.0200 -9.3847 -1.3282 29 8 1.8168 -2.4932 0.0006 30 6 2.2035 -1.2027 -0.0001 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6528 2.1253 -0.0004 35 1 4.1109 2.1527 0.0001 36 1 5.3715 0.0575 0.0005 37 1 5.0422 -2.9569 0.0023 38 1 0.8115 -4.8881 0.0013 39 1 2.0669 -7.2572 -0.8863 40 1 2.0663 -7.2556 0.8937 41 1 0.1618 -6.7661 2.1010 42 1 -1.1735 -6.0213 1.1812 43 1 -3.5889 -10.9961 2.3926 44 1 -1.4185 -10.0795 1.1298 45 1 -2.1734 -8.9759 -0.0593 46 1 -0.0399 -10.3485 -1.3775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958722888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:13 Heat of formation + Delta-G solvation = -53.667831 kcal Electronic energy + Delta-G solvation = -29199.225528 eV Core-core repulsion = 25054.955832 eV Total energy + Delta-G solvation = -4144.269697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.61059 -40.94040 -39.78488 -39.01008 -36.69111 -36.29571 -34.65583 -34.10831 -32.42429 -31.83394 -30.64946 -29.28888 -27.87556 -27.41769 -25.84489 -24.20946 -23.69327 -22.41299 -21.78464 -21.67163 -21.25606 -19.40866 -18.87008 -18.55335 -18.29907 -17.60142 -17.22140 -17.00893 -16.62300 -16.38379 -16.06423 -15.69763 -15.58070 -15.07543 -14.78366 -14.77122 -14.48761 -14.27901 -14.20462 -14.09476 -13.99990 -13.70948 -13.30151 -13.27136 -13.12918 -12.91303 -12.77912 -12.58574 -12.45182 -12.35509 -11.95548 -11.94220 -11.89797 -11.72130 -11.31255 -11.15088 -10.85216 -10.75424 -10.35898 -9.67390 -9.18930 -8.95150 -7.81809 -5.27258 -0.53859 0.31688 0.73067 1.31633 1.46382 1.47689 1.56583 1.93317 1.95432 2.45976 2.66511 3.15474 3.27744 3.30684 3.51267 3.55012 3.69531 3.84881 3.87613 3.94670 4.00903 4.06905 4.29750 4.37360 4.39321 4.42557 4.48351 4.54741 4.56847 4.67381 4.75741 4.83352 4.84644 4.91360 4.98510 5.08870 5.23043 5.25041 5.29119 5.39319 5.40899 5.45394 5.46084 5.54047 5.71824 5.97584 6.22734 6.26785 6.81077 6.88157 7.05685 7.71360 8.33917 9.20067 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002381 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.398535 B =11755.071114 C =13157.815611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.079 4.079 4 C -0.129 4.129 5 C -0.072 4.072 6 C -0.162 4.162 7 C -0.107 4.107 8 C -0.047 4.047 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.704 5.704 12 C 0.144 3.856 13 C -0.089 4.089 14 H 0.092 0.908 15 C 0.139 3.861 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.083 0.917 19 C -0.066 4.066 20 N -0.948 5.948 21 Si 0.982 3.018 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.133 3.867 26 C 0.099 3.901 27 H 0.072 0.928 28 O -0.568 6.568 29 O -0.193 6.193 30 C 0.045 3.955 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.181 0.819 38 H 0.415 0.585 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.249 0.751 44 H 0.081 0.919 45 H -0.008 1.008 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.198 22.606 -6.854 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.097 4.097 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.163 4.163 7 C -0.128 4.128 8 C -0.096 4.096 9 C 0.387 3.613 10 O -0.428 6.428 11 N -0.353 5.353 12 C 0.021 3.979 13 C -0.109 4.109 14 H 0.110 0.890 15 C 0.014 3.986 16 N -0.350 5.350 17 C -0.369 4.369 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.007 3.993 26 C 0.038 3.962 27 H 0.090 0.910 28 O -0.375 6.375 29 O -0.095 6.095 30 C -0.003 4.003 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.199 0.801 38 H 0.251 0.749 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.010 0.990 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.524 22.510 -6.900 27.152 hybrid contribution -1.233 -1.049 0.880 1.842 sum 12.292 21.462 -6.020 25.454 Atomic orbital electron populations 1.20802 0.89179 1.03865 1.03267 1.19270 0.97437 0.88192 1.04470 1.21399 0.94750 0.96848 0.96726 1.21244 0.94074 0.99048 1.00299 1.20730 1.01436 0.89411 0.97417 1.20164 0.93091 0.94446 1.08554 1.23006 0.99388 0.90672 0.99745 1.21776 0.86228 0.90400 1.11203 1.16753 0.84057 0.83748 0.76765 1.90857 1.34724 1.64885 1.52339 1.45884 1.08277 1.08277 1.72897 1.21329 0.95326 0.78370 1.02867 1.22240 0.94956 0.95252 0.98419 0.89009 1.21502 0.92365 0.91121 0.93634 1.44598 1.50254 1.17074 1.23102 1.19457 1.17487 1.02088 0.97895 0.89931 1.25644 1.01765 0.96518 1.01894 1.69998 1.43917 1.08169 1.37687 0.85032 0.78436 0.76631 0.78944 1.21394 1.21843 1.19410 1.22337 0.92168 0.95409 0.89362 1.22975 0.97138 0.92892 0.83198 0.91047 1.86343 1.96882 1.28120 1.26200 1.83971 1.33835 1.15003 1.76730 1.20069 0.93725 0.83392 1.03117 0.90503 0.88616 0.92470 0.81365 0.81640 0.82972 0.80120 0.74912 0.90073 0.91132 0.94925 0.94982 0.94161 0.90131 0.98989 0.75536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.02 71.24 0.71 -0.92 16 2 C -0.09 -1.62 5.89 -19.78 -0.12 -1.74 16 3 C -0.08 -0.92 9.67 22.31 0.22 -0.70 16 4 C -0.13 -1.36 9.98 22.03 0.22 -1.14 16 5 C -0.07 -1.04 10.06 22.25 0.22 -0.82 16 6 C -0.16 -3.44 6.38 -20.24 -0.13 -3.57 16 7 C -0.11 -2.52 10.80 23.79 0.26 -2.26 16 8 C -0.05 -1.24 7.07 24.00 0.17 -1.08 16 9 C 0.60 17.75 7.79 86.53 0.67 18.42 16 10 O -0.55 -18.86 16.82 -4.18 -0.07 -18.93 16 11 N -0.70 -19.43 5.40 -466.80 -2.52 -21.94 16 12 C 0.14 4.27 4.99 86.38 0.43 4.70 16 13 C -0.09 -3.02 2.75 -9.61 -0.03 -3.05 16 14 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 15 C 0.14 5.55 6.52 86.73 0.57 6.12 16 16 N -0.62 -31.65 3.39 -691.99 -2.35 -34.00 16 17 C -0.24 -13.33 10.27 84.03 0.86 -12.46 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 20 N -0.95 -55.49 10.09 21.65 0.22 -55.28 16 21 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 C 0.13 6.43 5.62 86.86 0.49 6.92 16 26 C 0.10 3.65 3.88 31.99 0.12 3.77 16 27 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 28 O -0.57 -18.67 13.47 -148.98 -2.01 -20.67 16 29 O -0.19 -5.05 10.28 -13.13 -0.14 -5.19 16 30 C 0.04 1.03 7.07 23.06 0.16 1.20 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.06 0.96 8.09 -2.38 -0.02 0.95 16 34 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.41 10.44 8.04 -92.71 -0.75 9.69 16 39 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 41 H 0.03 1.29 7.77 -2.39 -0.02 1.28 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.08 4.38 5.87 -2.39 -0.01 4.36 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.39 9.94 9.12 -74.06 -0.68 9.27 16 Total: -1.00 -72.51 386.75 0.07 -72.43 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.39 Total: 26.23 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.30 Total: 10.20 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.65 Total: -111.22 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -2.21 Total: -44.79 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.51 0.07 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958722888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.766 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds