Wall clock time and date at job start Wed Apr 1 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38835 * 119.77725 * 2 1 4 4 C 1.37799 * 120.74289 * 179.58264 * 3 2 1 5 5 C 1.39030 * 119.85330 * 0.64831 * 4 3 2 6 6 O 1.34714 * 133.24371 * 179.24720 * 5 4 3 7 7 C 1.34939 * 110.86376 * 180.02562 * 6 5 4 8 8 C 1.46979 * 125.13424 * 179.97438 * 7 6 5 9 9 O 1.21658 * 119.99964 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99548 * 0.02562 * 8 7 6 11 11 C 1.46508 * 119.99597 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46910 * 180.02562 * 11 10 8 13 13 H 1.09006 * 110.64103 * 56.68842 * 12 11 10 14 14 C 1.54324 * 110.72068 * 293.54761 * 12 11 10 15 15 N 1.47023 * 107.26718 * 219.44213 * 14 12 11 16 16 C 1.36943 * 125.64342 * 178.90568 * 15 14 12 17 17 H 1.08005 * 120.00054 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99868 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46658 * 60.00875 * 20 18 16 22 22 H 1.48504 * 109.46755 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47311 * 300.00510 * 20 18 16 24 24 C 1.47418 * 108.70644 * 358.93981 * 15 14 12 25 25 C 1.54907 * 104.83218 * 24.13244 * 24 15 14 26 26 H 1.09000 * 111.01082 * 81.05743 * 25 24 15 27 27 O 1.42902 * 111.00355 * 204.91779 * 25 24 15 28 28 C 1.35815 * 109.73648 * 359.97438 * 7 6 5 29 29 C 1.40724 * 119.15554 * 359.55136 * 5 4 3 30 30 C 1.36618 * 119.77851 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47290 * 269.97646 * 1 2 3 32 32 H 1.08999 * 109.47024 * 29.98109 * 1 2 3 33 33 H 1.08999 * 109.46949 * 149.97969 * 1 2 3 34 34 H 1.08004 * 119.63134 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.06871 * 179.89962 * 4 3 2 36 36 H 0.96998 * 120.00424 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47090 * 300.00477 * 11 10 8 38 38 H 1.08997 * 109.46873 * 60.00156 * 11 10 8 39 39 H 1.08994 * 109.88661 * 338.86461 * 14 12 11 40 40 H 1.09002 * 109.88001 * 99.87543 * 14 12 11 41 41 H 0.97009 * 119.99958 * 179.97438 * 19 18 16 42 42 H 1.09008 * 110.36412 * 142.96243 * 24 15 14 43 43 H 1.08995 * 110.37336 * 265.17938 * 24 15 14 44 44 H 0.96700 * 113.99421 * 292.18687 * 27 25 24 45 45 H 1.08002 * 126.95803 * 179.97438 * 28 7 6 46 46 H 1.08001 * 120.14669 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2050 0.0000 4 6 3.5743 1.2283 0.0086 5 6 4.2866 0.0343 0.0038 6 8 5.6022 -0.2554 -0.0033 7 6 5.8003 -1.5902 -0.0061 8 6 7.1135 -2.2504 -0.0142 9 8 7.1837 -3.4650 -0.0167 10 7 8.2398 -1.5102 -0.0189 11 6 9.5487 -2.1683 -0.0264 12 6 10.6523 -1.1086 -0.0299 13 1 10.5455 -0.4398 0.8243 14 6 10.6403 -0.3121 -1.3517 15 7 12.0408 -0.0848 -1.7369 16 6 12.4624 0.5683 -2.8644 17 1 11.7387 0.9681 -3.5594 18 6 13.8198 0.7174 -3.1134 19 7 14.7016 0.2306 -2.2662 20 14 14.3949 1.6076 -4.6517 21 1 13.8773 2.9994 -4.6407 22 1 15.8794 1.6313 -4.6839 23 1 13.8854 0.8993 -5.8532 24 6 12.9160 -0.6770 -0.7090 25 6 12.0534 -1.7751 -0.0385 26 1 12.0485 -2.6871 -0.6355 27 8 12.5033 -2.0386 1.2920 28 6 4.6032 -2.2316 -0.0004 29 6 3.5825 -1.1841 -0.0003 30 6 2.1856 -1.1858 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6469 2.1348 0.0004 35 1 4.0996 2.1719 0.0069 36 1 8.1838 -0.5418 -0.0166 37 1 9.6470 -2.7918 0.8622 38 1 9.6380 -2.7893 -0.9177 39 1 10.1313 -0.8862 -2.1259 40 1 10.1342 0.6421 -1.2049 41 1 15.6503 0.3345 -2.4404 42 1 13.7993 -1.1180 -1.1712 43 1 13.2076 0.0775 0.0215 44 1 13.3748 -2.4552 1.3371 45 1 4.4383 -3.2989 -0.0013 46 1 1.6443 -2.1204 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958727598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:55 Heat of formation + Delta-G solvation = -31.052628 kcal Electronic energy + Delta-G solvation = -28880.642295 eV Core-core repulsion = 24737.353267 eV Total energy + Delta-G solvation = -4143.289028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76414 -39.74363 -38.57065 -38.18156 -35.27252 -34.76943 -33.12449 -32.63207 -32.25348 -30.33998 -29.50751 -27.70268 -27.20422 -25.77636 -24.45998 -23.11362 -22.13346 -21.75957 -20.90457 -20.26116 -19.84542 -18.34250 -17.75685 -17.07221 -16.78291 -16.63954 -15.98337 -15.61597 -15.40956 -15.19024 -14.92695 -14.44306 -14.24329 -14.08080 -13.98795 -13.74737 -13.47601 -13.28315 -13.04222 -12.90454 -12.59648 -12.43416 -12.18999 -12.02804 -12.00304 -11.60078 -11.31059 -11.27698 -11.02014 -10.82341 -10.69325 -10.51975 -10.50151 -10.11159 -9.91467 -9.71039 -9.22233 -9.15916 -8.79818 -8.72916 -8.55229 -6.93925 -5.73726 -3.16379 0.28193 0.96547 1.57970 2.20651 2.99745 3.01998 3.29806 3.36563 3.40740 3.41994 4.10876 4.29048 4.39648 4.42138 4.66232 4.67245 4.74855 4.86185 4.94635 5.03100 5.08091 5.18703 5.20059 5.27902 5.40961 5.44544 5.50028 5.54111 5.62885 5.76636 5.83052 5.88120 5.95987 5.99669 6.00859 6.14246 6.14977 6.19017 6.28507 6.38435 6.54578 6.72182 6.77005 7.32819 7.35824 7.51596 7.71626 7.93439 8.13071 8.26266 9.12352 9.73088 10.36039 11.30248 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.002157 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.064130 B =12976.916108 C =14341.898295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.105 4.105 5 C 0.066 3.934 6 O -0.182 6.182 7 C -0.018 4.018 8 C 0.596 3.404 9 O -0.518 6.518 10 N -0.708 5.708 11 C 0.131 3.869 12 C -0.106 4.106 13 H 0.088 0.912 14 C 0.140 3.860 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.128 3.872 25 C 0.082 3.918 26 H 0.062 0.938 27 O -0.569 6.569 28 C -0.118 4.118 29 C -0.139 4.139 30 C -0.063 4.063 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.254 0.746 42 H 0.110 0.890 43 H 0.023 0.977 44 H 0.377 0.623 45 H 0.170 0.830 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.421 -1.887 6.978 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.102 4.102 4 C -0.123 4.123 5 C 0.017 3.983 6 O -0.084 6.084 7 C -0.068 4.068 8 C 0.381 3.619 9 O -0.396 6.396 10 N -0.358 5.358 11 C 0.008 3.992 12 C -0.125 4.125 13 H 0.106 0.894 14 C 0.014 3.986 15 N -0.328 5.328 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.748 3.252 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.003 3.997 25 C 0.022 3.978 26 H 0.080 0.920 27 O -0.374 6.374 28 C -0.139 4.139 29 C -0.140 4.140 30 C -0.081 4.081 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.127 0.873 43 H 0.041 0.959 44 H 0.224 0.776 45 H 0.188 0.812 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.476 -2.225 7.012 25.558 hybrid contribution 0.805 0.738 -0.915 1.425 sum -23.671 -1.487 6.097 24.489 Atomic orbital electron populations 1.20762 0.90474 1.03019 1.02496 1.19542 0.96551 0.92639 1.01993 1.20897 0.92431 0.98146 0.98756 1.20017 0.93110 0.94895 1.04308 1.19747 0.80900 0.95736 1.01881 1.84037 1.24629 1.23630 1.76088 1.22073 0.95995 0.80472 1.08268 1.16649 0.81411 0.86229 0.77622 1.90889 1.85806 1.12089 1.50811 1.45991 1.05829 1.10942 1.73007 1.21567 0.79561 0.95222 1.02809 1.22418 0.93280 0.96891 0.99919 0.89411 1.21375 0.88936 0.96149 0.92156 1.44302 0.99045 1.66047 1.23368 1.19044 0.91153 1.28081 0.97027 0.90324 1.24808 0.95666 1.01197 0.98941 1.69750 1.00759 1.50362 1.36286 0.86108 0.77539 0.79366 0.82220 1.21134 1.21509 1.21070 1.22546 0.94674 0.92274 0.90218 1.23309 0.93607 0.98210 0.82725 0.92022 1.86369 1.39174 1.84168 1.27682 1.22718 0.89169 1.00126 1.01852 1.19902 0.94577 0.92448 1.07081 1.20207 0.91009 0.98382 0.98474 0.91069 0.91328 0.91409 0.84554 0.84517 0.75608 0.90602 0.90699 0.95284 0.95677 0.93552 0.87277 0.95943 0.77562 0.81218 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.00 36.01 0.36 -0.16 16 2 C -0.11 -0.80 5.85 -104.98 -0.61 -1.41 16 3 C -0.08 -0.62 9.66 -39.52 -0.38 -1.00 16 4 C -0.10 -0.95 10.07 -39.45 -0.40 -1.35 16 5 C 0.07 0.76 7.41 -38.35 -0.28 0.48 16 6 O -0.18 -2.34 10.28 2.80 0.03 -2.31 16 7 C -0.02 -0.24 7.07 -36.91 -0.26 -0.50 16 8 C 0.60 8.75 7.79 -12.72 -0.10 8.65 16 9 O -0.52 -8.87 16.83 5.23 0.09 -8.78 16 10 N -0.71 -9.87 5.40 -61.52 -0.33 -10.20 16 11 C 0.13 1.99 4.99 -4.04 -0.02 1.97 16 12 C -0.11 -1.82 2.75 -88.78 -0.24 -2.07 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 14 C 0.14 2.81 6.52 -3.06 -0.02 2.79 16 15 N -0.60 -15.03 3.39 -170.08 -0.58 -15.60 16 16 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 20 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C 0.13 3.03 5.62 -2.53 -0.01 3.01 16 25 C 0.08 1.53 3.88 -24.58 -0.10 1.43 16 26 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 27 O -0.57 -9.66 13.47 -35.23 -0.47 -10.13 16 28 C -0.12 -1.39 10.81 -37.23 -0.40 -1.79 16 29 C -0.14 -1.54 6.38 -105.19 -0.67 -2.21 16 30 C -0.06 -0.54 9.68 -39.62 -0.38 -0.93 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.27 8.08 -51.93 -0.42 -0.14 16 34 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.41 5.18 8.04 -40.82 -0.33 4.85 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 39 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.11 2.86 5.88 -51.92 -0.31 2.55 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.38 4.95 9.12 45.56 0.42 5.37 16 45 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -32.79 386.71 -9.33 -42.12 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.65 Total: 7.86 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.78 Total: 0.23 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.35 Total: -51.56 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.36 Total: -21.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.79 -9.33 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958727598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.071 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds