Wall clock time and date at job start Wed Apr 1 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38835 * 119.77725 * 2 1 4 4 C 1.37799 * 120.74289 * 179.58264 * 3 2 1 5 5 C 1.39030 * 119.85330 * 0.64831 * 4 3 2 6 6 O 1.34714 * 133.24371 * 179.24720 * 5 4 3 7 7 C 1.34939 * 110.86376 * 180.02562 * 6 5 4 8 8 C 1.46979 * 125.13424 * 179.97438 * 7 6 5 9 9 O 1.21658 * 119.99964 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99548 * 0.02562 * 8 7 6 11 11 C 1.46508 * 119.99597 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46910 * 180.02562 * 11 10 8 13 13 H 1.09006 * 110.64103 * 56.68842 * 12 11 10 14 14 C 1.54324 * 110.72068 * 293.54761 * 12 11 10 15 15 N 1.47023 * 107.26718 * 219.44213 * 14 12 11 16 16 C 1.36943 * 125.64342 * 178.90568 * 15 14 12 17 17 H 1.08005 * 120.00054 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99868 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46658 * 60.00875 * 20 18 16 22 22 H 1.48504 * 109.46755 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47311 * 300.00510 * 20 18 16 24 24 C 1.47418 * 108.70644 * 358.93981 * 15 14 12 25 25 C 1.54907 * 104.83218 * 24.13244 * 24 15 14 26 26 H 1.09000 * 111.01082 * 81.05743 * 25 24 15 27 27 O 1.42902 * 111.00355 * 204.91779 * 25 24 15 28 28 C 1.35815 * 109.73648 * 359.97438 * 7 6 5 29 29 C 1.40724 * 119.15554 * 359.55136 * 5 4 3 30 30 C 1.36618 * 119.77851 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47290 * 269.97646 * 1 2 3 32 32 H 1.08999 * 109.47024 * 29.98109 * 1 2 3 33 33 H 1.08999 * 109.46949 * 149.97969 * 1 2 3 34 34 H 1.08004 * 119.63134 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.06871 * 179.89962 * 4 3 2 36 36 H 0.96998 * 120.00424 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47090 * 300.00477 * 11 10 8 38 38 H 1.08997 * 109.46873 * 60.00156 * 11 10 8 39 39 H 1.08994 * 109.88661 * 338.86461 * 14 12 11 40 40 H 1.09002 * 109.88001 * 99.87543 * 14 12 11 41 41 H 0.97009 * 119.99958 * 179.97438 * 19 18 16 42 42 H 1.09008 * 110.36412 * 142.96243 * 24 15 14 43 43 H 1.08995 * 110.37336 * 265.17938 * 24 15 14 44 44 H 0.96700 * 113.99421 * 292.18687 * 27 25 24 45 45 H 1.08002 * 126.95803 * 179.97438 * 28 7 6 46 46 H 1.08001 * 120.14669 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2050 0.0000 4 6 3.5743 1.2283 0.0086 5 6 4.2866 0.0343 0.0038 6 8 5.6022 -0.2554 -0.0033 7 6 5.8003 -1.5902 -0.0061 8 6 7.1135 -2.2504 -0.0142 9 8 7.1837 -3.4650 -0.0167 10 7 8.2398 -1.5102 -0.0189 11 6 9.5487 -2.1683 -0.0264 12 6 10.6523 -1.1086 -0.0299 13 1 10.5455 -0.4398 0.8243 14 6 10.6403 -0.3121 -1.3517 15 7 12.0408 -0.0848 -1.7369 16 6 12.4624 0.5683 -2.8644 17 1 11.7387 0.9681 -3.5594 18 6 13.8198 0.7174 -3.1134 19 7 14.7016 0.2306 -2.2662 20 14 14.3949 1.6076 -4.6517 21 1 13.8773 2.9994 -4.6407 22 1 15.8794 1.6313 -4.6839 23 1 13.8854 0.8993 -5.8532 24 6 12.9160 -0.6770 -0.7090 25 6 12.0534 -1.7751 -0.0385 26 1 12.0485 -2.6871 -0.6355 27 8 12.5033 -2.0386 1.2920 28 6 4.6032 -2.2316 -0.0004 29 6 3.5825 -1.1841 -0.0003 30 6 2.1856 -1.1858 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6469 2.1348 0.0004 35 1 4.0996 2.1719 0.0069 36 1 8.1838 -0.5418 -0.0166 37 1 9.6470 -2.7918 0.8622 38 1 9.6380 -2.7893 -0.9177 39 1 10.1313 -0.8862 -2.1259 40 1 10.1342 0.6421 -1.2049 41 1 15.6503 0.3345 -2.4404 42 1 13.7993 -1.1180 -1.1712 43 1 13.2076 0.0775 0.0215 44 1 13.3748 -2.4552 1.3371 45 1 4.4383 -3.2989 -0.0013 46 1 1.6443 -2.1204 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958727598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:54 Heat of formation + Delta-G solvation = -53.754598 kcal Electronic energy + Delta-G solvation = -28881.626726 eV Core-core repulsion = 24737.353267 eV Total energy + Delta-G solvation = -4144.273459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.59816 -40.93367 -39.78439 -39.19272 -36.68874 -36.29076 -34.13060 -33.92784 -33.15604 -31.71913 -30.63412 -29.32595 -27.95314 -27.28788 -25.80881 -24.34582 -22.91087 -22.58665 -22.32623 -21.64167 -21.25958 -19.46532 -18.88217 -18.50041 -18.31806 -17.57906 -17.19864 -17.00724 -16.38166 -16.36400 -16.04256 -15.69377 -15.57594 -15.12511 -14.98588 -14.76460 -14.49884 -14.36001 -14.22192 -14.18248 -13.99564 -13.70875 -13.29560 -13.12730 -12.99487 -12.74620 -12.72523 -12.61094 -12.44332 -12.39104 -11.93581 -11.92979 -11.91419 -11.71722 -11.33527 -11.30847 -10.84564 -10.74827 -10.36033 -9.50618 -9.31626 -8.94745 -7.81343 -5.26830 -0.54204 0.27668 0.73981 1.31639 1.46285 1.49119 1.55478 1.93533 1.95522 2.46329 2.62757 3.15332 3.27316 3.29710 3.55041 3.56205 3.69893 3.84565 3.86865 3.92091 4.01905 4.07209 4.24236 4.37312 4.39571 4.42640 4.44940 4.56235 4.66977 4.73976 4.81322 4.83861 4.91451 4.91720 5.07104 5.08489 5.14351 5.23718 5.25265 5.28153 5.41073 5.46196 5.55540 5.57238 5.72028 5.96033 6.23003 6.27133 6.81336 6.88326 7.05895 7.71735 8.34303 9.20239 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.002157 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.064130 B =12976.916108 C =14341.898295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.074 4.074 4 C -0.119 4.119 5 C 0.041 3.959 6 O -0.194 6.194 7 C -0.045 4.045 8 C 0.600 3.400 9 O -0.548 6.548 10 N -0.703 5.703 11 C 0.144 3.856 12 C -0.089 4.089 13 H 0.092 0.908 14 C 0.138 3.862 15 N -0.623 5.623 16 C -0.242 4.242 17 H 0.083 0.917 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.279 1.279 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.133 3.867 25 C 0.099 3.901 26 H 0.072 0.928 27 O -0.568 6.568 28 C -0.108 4.108 29 C -0.159 4.159 30 C -0.070 4.070 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.169 0.831 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.249 0.751 42 H 0.081 0.919 43 H -0.008 1.008 44 H 0.395 0.605 45 H 0.181 0.819 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.398 -1.347 6.977 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.007 4.007 6 O -0.097 6.097 7 C -0.094 4.094 8 C 0.387 3.613 9 O -0.428 6.428 10 N -0.353 5.353 11 C 0.021 3.979 12 C -0.109 4.109 13 H 0.110 0.890 14 C 0.013 3.987 15 N -0.350 5.350 16 C -0.370 4.370 17 H 0.101 0.899 18 C -0.259 4.259 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.202 1.202 24 C 0.007 3.993 25 C 0.038 3.962 26 H 0.089 0.911 27 O -0.376 6.376 28 C -0.129 4.129 29 C -0.160 4.160 30 C -0.088 4.088 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.187 0.813 35 H 0.168 0.832 36 H 0.251 0.749 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.010 0.990 44 H 0.245 0.755 45 H 0.198 0.802 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.477 -1.678 7.025 28.411 hybrid contribution 1.570 0.639 -0.880 1.910 sum -25.907 -1.039 6.145 26.646 Atomic orbital electron populations 1.20835 0.88148 1.04158 1.03481 1.19970 0.98221 0.92154 1.00231 1.21366 0.91830 0.99599 0.96381 1.20374 0.93967 0.94696 1.04669 1.20248 0.80518 0.97018 1.02891 1.83978 1.25633 1.23288 1.76767 1.21767 0.95542 0.81043 1.11078 1.16754 0.81917 0.85889 0.76779 1.90860 1.86380 1.13228 1.52343 1.45884 1.05336 1.11233 1.72863 1.21329 0.79390 0.94305 1.02872 1.22242 0.93263 0.96931 0.98426 0.89001 1.21510 0.86606 0.96945 0.93621 1.44584 1.01254 1.66023 1.23129 1.19419 0.91581 1.28084 0.97938 0.89947 1.25650 0.95891 1.02406 1.01914 1.69994 1.00540 1.51427 1.37769 0.85100 0.76571 0.78381 0.78954 1.20476 1.21881 1.20232 1.22333 0.94815 0.92686 0.89425 1.22973 0.93157 0.96839 0.83233 0.91051 1.86344 1.40619 1.84295 1.26298 1.22990 0.89147 1.00874 0.99862 1.20108 0.95594 0.91917 1.08404 1.20535 0.90121 0.99983 0.98120 0.90019 0.89903 0.90671 0.81341 0.83177 0.74869 0.90069 0.91128 0.94899 0.94973 0.94164 0.90151 0.98993 0.75532 0.80164 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.00 71.24 0.71 0.09 16 2 C -0.11 -1.26 5.85 -20.10 -0.12 -1.38 16 3 C -0.07 -0.87 9.66 22.31 0.22 -0.65 16 4 C -0.12 -1.97 10.07 22.36 0.23 -1.75 16 5 C 0.04 0.93 7.41 23.07 0.17 1.10 16 6 O -0.19 -5.04 10.28 -12.90 -0.13 -5.18 16 7 C -0.04 -1.19 7.07 24.00 0.17 -1.02 16 8 C 0.60 17.70 7.79 86.53 0.67 18.38 16 9 O -0.55 -18.84 16.83 -4.22 -0.07 -18.91 16 10 N -0.70 -19.38 5.40 -466.79 -2.52 -21.89 16 11 C 0.14 4.26 4.99 86.38 0.43 4.69 16 12 C -0.09 -3.02 2.75 -9.60 -0.03 -3.04 16 13 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 14 C 0.14 5.53 6.52 86.73 0.57 6.10 16 15 N -0.62 -31.65 3.39 -692.00 -2.35 -34.00 16 16 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 19 N -0.95 -55.51 10.09 21.65 0.22 -55.29 16 20 Si 0.98 45.17 29.55 68.60 2.03 47.19 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.13 6.45 5.62 86.86 0.49 6.93 16 25 C 0.10 3.65 3.88 31.99 0.12 3.78 16 26 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 27 O -0.57 -18.69 13.47 -148.98 -2.01 -20.70 16 28 C -0.11 -2.54 10.81 23.79 0.26 -2.28 16 29 C -0.16 -3.41 6.38 -20.24 -0.13 -3.54 16 30 C -0.07 -1.08 9.68 22.24 0.22 -0.86 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 33 H 0.07 0.35 8.08 -2.39 -0.02 0.33 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.41 10.40 8.04 -92.71 -0.75 9.65 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 39 H 0.03 1.30 7.77 -2.39 -0.02 1.29 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 42 H 0.08 4.37 5.88 -2.38 -0.01 4.35 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.39 9.95 9.12 -74.06 -0.68 9.28 16 45 H 0.18 3.62 8.06 -2.91 -0.02 3.59 16 46 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -72.12 386.71 0.08 -72.05 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.39 Total: 25.94 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 5.31 Total: 10.78 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -4.65 Total: -111.18 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.21 Total: -44.78 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.12 0.08 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958727598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.291 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds