Wall clock time and date at job start Wed Apr 1 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51588 * 57.34666 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.44738 * 13 12 11 16 16 N 1.46503 * 109.46847 * 299.99881 * 15 13 12 17 17 C 1.34771 * 120.00194 * 180.02562 * 16 15 13 18 18 O 1.21572 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00514 * 179.97438 * 17 16 15 20 20 C 1.41496 * 126.52344 * 179.97438 * 19 17 16 21 21 C 1.35361 * 105.50543 * 179.97438 * 20 19 17 22 22 N 1.35031 * 107.23005 * 359.97438 * 21 20 19 23 23 C 1.46500 * 124.88788 * 180.02562 * 22 21 20 24 24 C 1.52994 * 109.47166 * 125.00284 * 23 22 21 25 25 F 1.39905 * 109.47017 * 175.00271 * 24 23 22 26 26 F 1.39894 * 109.47218 * 295.00029 * 24 23 22 27 27 N 1.28477 * 110.23017 * 359.75483 * 22 21 20 28 28 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 29 29 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 30 30 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 31 31 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 32 32 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 33 33 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 34 34 H 1.08999 * 109.47032 * 59.99457 * 15 13 12 35 35 H 1.08997 * 109.47638 * 180.02562 * 15 13 12 36 36 H 0.97001 * 120.00115 * 359.97438 * 16 15 13 37 37 H 1.08007 * 127.24669 * 359.97438 * 20 19 17 38 38 H 1.08005 * 126.38603 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46985 * 245.00658 * 23 22 21 40 40 H 1.08994 * 109.46896 * 5.00108 * 23 22 21 41 41 H 1.09005 * 109.47203 * 55.00314 * 24 23 22 42 42 H 1.08999 * 109.68106 * 249.21167 * 28 9 7 43 43 H 1.09001 * 109.68075 * 9.76662 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8001 -4.2797 1.6833 15 6 2.2747 -6.0297 0.5412 16 7 2.4096 -6.9390 1.6819 17 6 2.6718 -8.2448 1.4756 18 8 2.7960 -8.6682 0.3428 19 6 2.8084 -9.1615 2.6258 20 6 3.0805 -10.5489 2.5691 21 6 3.1150 -10.9637 3.8572 22 7 2.8775 -9.8835 4.6318 23 6 2.8282 -9.8968 6.0959 24 6 3.8121 -8.8638 6.6487 25 9 3.6838 -8.7955 8.0401 26 9 5.1183 -9.2408 6.3189 27 7 2.7065 -8.8412 3.9003 28 6 1.8304 -3.6636 -0.1493 29 1 -0.4849 0.8401 -0.0040 30 1 0.0770 -1.3425 1.6699 31 1 -0.6958 -2.6080 0.6813 32 1 1.2377 -3.0144 3.0103 33 1 -0.4867 -3.4548 2.9602 34 1 1.4561 -6.3649 -0.0957 35 1 3.2024 -6.0253 -0.0311 36 1 2.3110 -6.6011 2.5858 37 1 3.2294 -11.1503 1.6844 38 1 3.2991 -11.9708 4.2012 39 1 1.8193 -9.6516 6.4277 40 1 3.0994 -10.8879 6.4595 41 1 3.5954 -7.8873 6.2154 42 1 1.0990 -4.0643 -0.8511 43 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035405733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:09 Heat of formation + Delta-G solvation = -72.146997 kcal Electronic energy + Delta-G solvation = -29757.378839 eV Core-core repulsion = 25090.371047 eV Total energy + Delta-G solvation = -4667.007792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.60943 -47.61234 -43.03056 -39.46233 -38.35639 -34.91156 -34.63159 -34.26948 -31.68044 -31.15898 -30.63127 -29.60614 -27.56116 -25.89395 -24.55856 -23.21407 -22.72055 -21.93054 -21.62014 -20.25297 -19.54079 -18.68326 -18.17196 -17.70884 -17.44725 -16.88794 -16.48236 -16.07739 -15.88863 -15.48648 -15.00522 -14.73110 -14.49848 -14.41466 -14.31693 -14.19494 -13.95725 -13.79147 -13.60396 -13.38661 -13.16760 -13.11365 -12.95039 -12.71805 -12.32662 -11.86800 -11.56259 -11.23965 -11.13681 -10.87871 -10.71511 -10.41629 -10.27017 -10.18082 -9.98899 -9.66723 -9.65910 -9.46805 -9.07424 -8.93464 -8.55849 -6.76885 -5.85885 -3.29496 1.24424 1.72871 1.83200 2.86578 3.19144 3.32852 3.35772 3.41004 3.43181 3.58923 3.66753 4.01192 4.17765 4.25230 4.36123 4.42020 4.55804 4.61846 4.95583 5.14602 5.30614 5.32362 5.44480 5.49118 5.51576 5.79282 5.85704 6.00961 6.06424 6.15383 6.24432 6.28856 6.36609 6.48179 6.52187 6.75074 7.09355 7.34950 7.50507 7.67078 7.70148 7.84946 8.22744 8.31897 9.09904 9.72586 10.29498 11.22181 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002281 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.594288 B =12272.357295 C =13390.849770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.704 5.704 17 C 0.599 3.401 18 O -0.535 6.535 19 C 0.003 3.997 20 C -0.174 4.174 21 C -0.009 4.009 22 N -0.291 5.291 23 C 0.077 3.923 24 C 0.254 3.746 25 F -0.193 7.193 26 F -0.197 7.197 27 N -0.265 5.265 28 C 0.122 3.878 29 H 0.254 0.746 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.409 0.591 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.031 0.969 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 -22.417 14.480 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.355 5.355 17 C 0.383 3.617 18 O -0.411 6.411 19 C -0.159 4.159 20 C -0.202 4.202 21 C -0.151 4.151 22 N -0.079 5.079 23 C -0.045 4.045 24 C 0.199 3.801 25 F -0.174 7.174 26 F -0.178 7.178 27 N -0.100 5.100 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.245 0.755 37 H 0.184 0.816 38 H 0.202 0.798 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.049 0.951 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.984 -21.801 14.523 26.665 hybrid contribution 0.614 0.557 0.104 0.836 sum 5.598 -21.244 14.627 26.393 Atomic orbital electron populations 1.70047 1.05287 1.25553 1.53796 1.25061 0.95354 0.98523 1.00765 0.86180 0.79334 0.83679 0.77336 1.20189 1.21624 1.21498 1.19245 0.92663 0.84545 1.41932 0.91263 1.44096 1.33658 1.01011 1.53040 1.21441 0.89117 0.98357 0.89712 1.23316 0.98998 0.84807 0.96641 1.87783 1.41193 1.32426 1.69457 1.22900 0.87553 0.93730 0.95351 0.92274 1.21505 1.02295 0.87378 0.88212 1.45787 1.70746 1.07591 1.11351 1.16853 0.77030 0.81386 0.86427 1.90803 1.51369 1.76598 1.22294 1.22069 1.08354 0.94959 0.90487 1.21833 1.07051 0.93991 0.97340 1.22891 1.07142 0.94239 0.90798 1.45050 1.51073 1.05627 1.06166 1.22945 1.02916 1.03079 0.75565 1.22098 0.79421 1.01230 0.77314 1.93039 1.95755 1.97512 1.31106 1.93044 1.39463 1.93151 1.92137 1.73482 1.19627 1.13527 1.03401 1.21533 0.99002 0.87182 0.92825 0.93546 0.88796 0.95367 0.94112 0.90075 0.90410 0.89875 0.75545 0.81577 0.79796 0.85498 0.85451 0.85352 0.95115 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.88 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 9 N -0.59 -14.78 3.04 -171.57 -0.52 -15.30 16 10 C 0.14 3.30 5.44 -3.53 -0.02 3.28 16 11 C 0.04 0.77 6.99 37.31 0.26 1.03 16 12 O -0.39 -7.28 10.13 -35.23 -0.36 -7.63 16 13 C 0.06 1.13 2.88 -26.36 -0.08 1.05 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.13 1.98 5.37 -4.04 -0.02 1.96 16 16 N -0.70 -10.04 5.45 -61.29 -0.33 -10.37 16 17 C 0.60 8.91 7.82 -12.39 -0.10 8.81 16 18 O -0.54 -9.40 16.93 5.30 0.09 -9.31 16 19 C 0.00 0.04 7.13 -82.77 -0.59 -0.55 16 20 C -0.17 -1.73 10.81 -39.37 -0.43 -2.15 16 21 C -0.01 -0.06 11.40 -17.17 -0.20 -0.26 16 22 N -0.29 -2.22 3.39 -61.34 -0.21 -2.43 16 23 C 0.08 0.31 6.59 -4.04 -0.03 0.28 16 24 C 0.25 1.49 5.37 37.15 0.20 1.69 16 25 F -0.19 -1.29 17.34 2.25 0.04 -1.25 16 26 F -0.20 -1.68 17.32 2.25 0.04 -1.64 16 27 N -0.27 -2.85 11.26 33.42 0.38 -2.47 16 28 C 0.12 2.52 6.05 -3.31 -0.02 2.50 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.41 5.47 8.07 -40.82 -0.33 5.14 16 37 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.13 0.16 8.04 -51.93 -0.42 -0.26 16 41 H 0.13 0.73 7.95 -51.93 -0.41 0.32 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -34.13 372.97 -6.58 -40.71 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.67 Total: 2.44 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.24 Total: 10.57 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.07 Total: -55.82 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.27 Total: -16.94 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.13 -6.58 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035405733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.441 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds