Wall clock time and date at job start Wed Apr 1 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51588 * 57.34666 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.44738 * 13 12 11 16 16 N 1.46503 * 109.46847 * 299.99881 * 15 13 12 17 17 C 1.34771 * 120.00194 * 180.02562 * 16 15 13 18 18 O 1.21572 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00514 * 179.97438 * 17 16 15 20 20 C 1.41496 * 126.52344 * 179.97438 * 19 17 16 21 21 C 1.35361 * 105.50543 * 179.97438 * 20 19 17 22 22 N 1.35031 * 107.23005 * 359.97438 * 21 20 19 23 23 C 1.46500 * 124.88788 * 180.02562 * 22 21 20 24 24 C 1.52994 * 109.47166 * 125.00284 * 23 22 21 25 25 F 1.39905 * 109.47017 * 175.00271 * 24 23 22 26 26 F 1.39894 * 109.47218 * 295.00029 * 24 23 22 27 27 N 1.28477 * 110.23017 * 359.75483 * 22 21 20 28 28 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 29 29 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 30 30 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 31 31 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 32 32 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 33 33 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 34 34 H 1.08999 * 109.47032 * 59.99457 * 15 13 12 35 35 H 1.08997 * 109.47638 * 180.02562 * 15 13 12 36 36 H 0.97001 * 120.00115 * 359.97438 * 16 15 13 37 37 H 1.08007 * 127.24669 * 359.97438 * 20 19 17 38 38 H 1.08005 * 126.38603 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46985 * 245.00658 * 23 22 21 40 40 H 1.08994 * 109.46896 * 5.00108 * 23 22 21 41 41 H 1.09005 * 109.47203 * 55.00314 * 24 23 22 42 42 H 1.08999 * 109.68106 * 249.21167 * 28 9 7 43 43 H 1.09001 * 109.68075 * 9.76662 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8001 -4.2797 1.6833 15 6 2.2747 -6.0297 0.5412 16 7 2.4096 -6.9390 1.6819 17 6 2.6718 -8.2448 1.4756 18 8 2.7960 -8.6682 0.3428 19 6 2.8084 -9.1615 2.6258 20 6 3.0805 -10.5489 2.5691 21 6 3.1150 -10.9637 3.8572 22 7 2.8775 -9.8835 4.6318 23 6 2.8282 -9.8968 6.0959 24 6 3.8121 -8.8638 6.6487 25 9 3.6838 -8.7955 8.0401 26 9 5.1183 -9.2408 6.3189 27 7 2.7065 -8.8412 3.9003 28 6 1.8304 -3.6636 -0.1493 29 1 -0.4849 0.8401 -0.0040 30 1 0.0770 -1.3425 1.6699 31 1 -0.6958 -2.6080 0.6813 32 1 1.2377 -3.0144 3.0103 33 1 -0.4867 -3.4548 2.9602 34 1 1.4561 -6.3649 -0.0957 35 1 3.2024 -6.0253 -0.0311 36 1 2.3110 -6.6011 2.5858 37 1 3.2294 -11.1503 1.6844 38 1 3.2991 -11.9708 4.2012 39 1 1.8193 -9.6516 6.4277 40 1 3.0994 -10.8879 6.4595 41 1 3.5954 -7.8873 6.2154 42 1 1.0990 -4.0643 -0.8511 43 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035405733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:08 Heat of formation + Delta-G solvation = -96.592347 kcal Electronic energy + Delta-G solvation = -29758.438869 eV Core-core repulsion = 25090.371047 eV Total energy + Delta-G solvation = -4668.067822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.11315 -48.13142 -43.69878 -40.72371 -39.85917 -36.53067 -35.78843 -35.18543 -33.38163 -32.48469 -31.69222 -30.32712 -29.19729 -27.37279 -25.50855 -24.91077 -23.72532 -22.91099 -22.56425 -21.63906 -20.82537 -19.31545 -18.87867 -18.65356 -18.35603 -18.07978 -17.54658 -17.15325 -17.12329 -16.82145 -16.29976 -16.13869 -15.77870 -15.51982 -15.32737 -15.05303 -15.01945 -14.88821 -14.65558 -14.50676 -14.48520 -14.09237 -13.84506 -13.77056 -13.41546 -13.22011 -13.01970 -12.71944 -12.50651 -12.36656 -12.17496 -12.06508 -11.92174 -11.87780 -11.45014 -11.24384 -10.80967 -10.55575 -10.41953 -10.17962 -10.03275 -8.76355 -7.91986 -5.39399 0.42838 1.12762 1.24536 1.45752 1.47688 1.58448 2.08663 2.33245 2.47033 2.49020 2.77554 3.17598 3.23196 3.31358 3.44702 3.48790 3.67622 3.93326 3.95187 3.98885 4.07381 4.23301 4.29537 4.35542 4.47141 4.51319 4.61594 4.70060 4.71933 4.74369 4.79256 4.89224 5.05338 5.23397 5.26591 5.34297 5.54996 5.60826 5.72914 6.24596 6.32096 6.39454 6.79643 7.05473 7.11831 7.73365 8.27179 9.14196 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002281 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.594288 B =12272.357295 C =13390.849770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.144 3.856 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.079 3.921 14 H 0.068 0.932 15 C 0.139 3.861 16 N -0.700 5.700 17 C 0.599 3.401 18 O -0.571 6.571 19 C -0.031 4.031 20 C -0.198 4.198 21 C 0.015 3.985 22 N -0.284 5.284 23 C 0.076 3.924 24 C 0.252 3.748 25 F -0.197 7.197 26 F -0.213 7.213 27 N -0.277 5.277 28 C 0.117 3.883 29 H 0.252 0.748 30 H 0.068 0.932 31 H -0.001 1.001 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.168 0.832 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.126 0.874 42 H 0.020 0.980 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -24.279 16.677 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.018 3.982 11 C -0.023 4.023 12 O -0.309 6.309 13 C 0.020 3.980 14 H 0.086 0.914 15 C 0.015 3.985 16 N -0.350 5.350 17 C 0.384 3.616 18 O -0.449 6.449 19 C -0.190 4.190 20 C -0.226 4.226 21 C -0.127 4.127 22 N -0.073 5.073 23 C -0.045 4.045 24 C 0.197 3.803 25 F -0.179 7.179 26 F -0.195 7.195 27 N -0.113 5.113 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.251 0.749 37 H 0.186 0.814 38 H 0.249 0.751 39 H 0.167 0.833 40 H 0.182 0.818 41 H 0.143 0.857 42 H 0.038 0.962 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.995 -23.680 16.747 29.617 hybrid contribution 0.304 1.064 -0.529 1.226 sum 6.299 -22.616 16.219 28.534 Atomic orbital electron populations 1.70200 1.06742 1.26004 1.55231 1.25843 0.96111 1.01659 1.01006 0.85145 0.78615 0.79477 0.76819 1.18945 1.22024 1.21424 1.19589 0.93029 0.85621 1.41266 0.90934 1.44378 1.33754 1.01910 1.53739 1.21306 0.87919 0.98399 0.90579 1.23158 1.00708 0.83542 0.94924 1.87800 1.41766 1.31930 1.69404 1.22735 0.87356 0.94129 0.93813 0.91417 1.21306 1.02392 0.86295 0.88470 1.45690 1.70694 1.07520 1.11146 1.17210 0.75995 0.81490 0.86879 1.90769 1.53044 1.77188 1.23922 1.21807 1.11218 0.95588 0.90436 1.22046 1.08351 0.93126 0.99081 1.23528 1.04107 0.95609 0.89463 1.45428 1.49211 1.05170 1.07442 1.23302 1.03497 1.04490 0.73174 1.22227 0.78990 1.02012 0.77054 1.93030 1.95728 1.97589 1.31507 1.93013 1.40909 1.93288 1.92267 1.73410 1.20011 1.14938 1.02946 1.21684 0.98903 0.86183 0.94143 0.93927 0.91407 0.98295 0.93129 0.87329 0.91484 0.88849 0.74918 0.81445 0.75149 0.83319 0.81814 0.85652 0.96216 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 11.14 21.65 0.24 -54.74 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 44.25 29.59 68.60 2.03 46.28 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.27 -14.45 9.65 84.04 0.81 -13.64 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.79 16 9 N -0.61 -30.90 3.04 -696.72 -2.12 -33.02 16 10 C 0.14 6.93 5.44 86.35 0.47 7.40 16 11 C 0.05 2.02 6.99 72.08 0.50 2.52 16 12 O -0.39 -14.17 10.13 -148.98 -1.51 -15.67 16 13 C 0.08 2.71 2.88 30.84 0.09 2.80 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.14 4.21 5.37 86.38 0.46 4.68 16 16 N -0.70 -19.63 5.45 -466.10 -2.54 -22.17 16 17 C 0.60 17.82 7.82 86.75 0.68 18.50 16 18 O -0.57 -20.43 16.93 -3.94 -0.07 -20.50 16 19 C -0.03 -0.74 7.13 42.46 0.30 -0.44 16 20 C -0.20 -3.63 10.81 22.41 0.24 -3.38 16 21 C 0.01 0.15 11.40 83.54 0.95 1.11 16 22 N -0.28 -3.45 3.39 -347.97 -1.18 -4.63 16 23 C 0.08 0.31 6.59 86.38 0.57 0.88 16 24 C 0.25 2.36 5.37 71.98 0.39 2.75 16 25 F -0.20 -2.20 17.34 44.97 0.78 -1.42 16 26 F -0.21 -3.22 17.32 44.97 0.78 -2.44 16 27 N -0.28 -5.45 11.26 -48.18 -0.54 -6.00 16 28 C 0.12 4.88 6.05 86.50 0.52 5.40 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.07 3.62 6.14 -2.39 -0.01 3.60 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.41 10.71 8.07 -92.71 -0.75 9.96 16 37 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.23 0.03 8.06 -2.91 -0.02 0.00 16 39 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.16 -0.46 8.04 -2.39 -0.02 -0.48 16 41 H 0.13 1.23 7.95 -2.38 -0.02 1.21 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 Total: -1.00 -76.13 372.97 2.59 -73.55 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.30 Total: 14.59 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 6.41 Total: 26.19 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -6.14 Total: -120.56 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.58 Total: -36.17 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 1.56 Total: -3.87 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -76.13 2.59 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035405733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.047 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds